Working Name Internal_isolate Uberstrain Name Data_Source(Accession_No.;Sequencing_Platform;Sequencing_Library;Insert_Size;Experiment;Status) Revised_Source_Niche Revised_Collection_Year Classification Source_Niche Source_Type Source_Details Collection_Year Collection_Month Collection_Day Collection_Time Continent Country Region District City Post_Code Latitude Longitude Lab_Contact Species Serological_Group Serotype EcoR_Cluster Path/Nonpath Simple_Patho Simple_Disease Comment Bio_Project_ID Project_ID Disease Sample_ID Secondary_Sample_ID Date_Entered Release_Date Barcode Status Coverage N50 Length Species_1 Contig_Number(>=200_bp) Low_Quality_Bases Version Assembly_barcode HC0_(indistinguishable) HC2 HC5 HC10 HC20 HC50 HC100 HC200 HC400 HC1100_(cgST_Cplx) HC1500 HC2000 HC2350_(subsp.) Uberstrain_1 Name_1 Data_Source(Accession_No.;Sequencing_Platform;Sequencing_Library;Insert_Size;Experiment;Status)_1 Revised_Source_Niche_1 Revised_Collection_Year_1 Classification_1 HC50_or_other HC200_Other HC100_Other HC50_Other fimH_type O_type H_type Flag Classification_img Pathogen Pathogen_img Revised_Source_Niche_img ColV (328/668) IS_IS100kyp.U59875 (331/668) IS_IS102.J01728 (4/668) IS_IS10L.J01829 (3/668) IS_IS10R.J01829 (55/668) IS_IS1133.Z12167 (10/668) IS_IS1203.U06468 (526/668) IS_IS1247.X84038 (2/668) IS_IS1294.X82430 (3/668) IS_IS1326.U38187 (15/668) IS_IS1351.Z83734 (15/668) IS_IS1353.U40482 (12/668) IS_IS1397.X92970 (649/668) IS_IS1414.AF143819 (8/668) IS_IS150.X07037 (111/668) IS_IS15DII.M12900 (3/668) IS_IS15DIV.X13616 (1/668) IS_IS186B.X03123 (19/668) IS_IS1A.X52534 (162/668) IS_IS1B.X17345 (2/668) IS_IS1F.X52538 (323/668) IS_IS1H.U15127 (39/668) IS_IS1R.J01730 (12/668) IS_IS1S.M37615 (90/668) IS_IS1X2.Z11605 (5/668) IS_IS1X4.Z11604 (40/668) IS_IS2.M18426 (200/668) IS_IS200C.NC_004431 (593/668) IS_IS21.X14793 (206/668) IS_IS257R1.X13290 (1/668) IS_IS26.X00011 (368/668) IS_IS3.X02311 (103/668) IS_IS30.X00792 (98/668) IS_IS3411.M19532 (27/668) IS_IS4.J01733 (49/668) IS_IS4321L.U67194 (3/668) IS_IS4321R.U67194 (15/668) IS_IS5.J01735 (53/668) IS_IS5075.AF457211 (13/668) IS_IS50R.U15573 (1/668) IS_IS6100.X53635 (24/668) IS_IS621.NC_009800 (625/668) IS_IS629.X51586 (240/668) IS_IS630.X05955 (5/668) IS_IS679.NC_002142 (6/668) IS_IS682.NC_002695 (78/668) IS_IS903B.X02527 (20/668) IS_IS91.X17114 (7/668) IS_IS911.X17613 (147/668) IS_ISAba125.AY751533 (1/668) IS_ISApl1.EF407820 (1/668) IS_ISCfr1.AF550415 (6/668) IS_ISCfr6... (4/668) IS_ISCfr8... (2/668) IS_ISCro1... (67/668) IS_ISEal1... (1/668) IS_ISEc1.L02370 (228/668) IS_ISEc10.NC_004431 (257/668) IS_ISEc12.DQ269483 (120/668) IS_ISEc13.DQ388534 (97/668) IS_ISEc16.NZ_AAJU01000005.1 (2/668) IS_ISEc17.DQ388534 (22/668) IS_ISEc20.NZ_AAJU01000001 (461/668) IS_ISEc21... (5/668) IS_ISEc22... (33/668) IS_ISEc23... (126/668) IS_ISEc28.FJ187822 (1/668) IS_ISEc30.NC_011603 (489/668) IS_ISEc31.NC_011751 (7/668) IS_ISEc32.NC_011747 (240/668) IS_ISEc33.JF785549 (1/668) IS_ISEc37.FJ914220 (1/668) IS_ISEc38.AJ303141 (640/668) IS_ISEc39.CP001855 (21/668) IS_ISEc40.NC_004431 (265/668) IS_ISEc45.NC_004431 (460/668) IS_ISEc48.ADUS01000070 (503/668) IS_ISEc52.HG941718 (12/668) IS_ISEc53.HG941718 (255/668) IS_ISEc58.DQ517526 (1/668) IS_ISEc62... (1/668) IS_ISEc76.NZ_CP019028 (1/668) IS_ISEc78.MF156714 (12/668) IS_ISEc8.NC_004431 (34/668) IS_ISEc9.AJ242809 (26/668) IS_ISEcl1.AF342826 (1/668) IS_ISEhe3.AF327445 (1/668) IS_ISEsa1.LCWW01000014 (3/668) IS_ISEsa2.MF344582 (2/668) IS_ISKox3.CP003684 (3/668) IS_ISKpn14.CP000649 (1/668) IS_ISKpn19.NC_010886 (1/668) IS_ISKpn21.AP012055 (1/668) IS_ISKpn24.NC_014312 (1/668) IS_ISKpn25.NC_009650 (1/668) IS_ISKpn26.NC_016845 (99/668) IS_ISKpn37.KU318421 (92/668) IS_ISKpn8.EF382672 (3/668) IS_ISPrst2.NZ_ABJD02000085 (2/668) IS_ISPrst3.NZ_ABJD02000085 (1/668) IS_ISPst2.AJ012352 (1/668) IS_ISRaq1.AY528232 (4/668) IS_ISSbo1.CP001062 (1/668) IS_ISSd1.M21947 (242/668) IS_ISSen4.EU219534 (3/668) IS_ISShdy1.AIHI01000025 (7/668) IS_ISShdy2... (1/668) IS_ISSpu2.NC_009438 (1/668) IS_ISSso4.NC_007385 (10/668) IS_ISVsa3.AJ289135 (37/668) IS_MITEEc1.U00096 (668/668) IS_Tn2.KT002541 (92/668) IS_Tn3.HM769901 (3/668) IS_Tn5403.X75779 (4/668) IS_TnEc1... (6/668) Col.BS512._1 (7/668) Col.IMGS31._1 (1/668) Col.IRGK._1 (2/668) Col.KPHS6._1 (1/668) Col.MG828._1 (135/668) Col.MP18._1 (4/668) Col156_1 (361/668) Col440I_1 (10/668) Col440II_1 (10/668) Col8282_1 (3/668) ColE10_1 (1/668) ColpVC_1 (26/668) ColRNAI_1 (21/668) IncA.C2_1 (2/668) IncB.O.K.Z IncFIA_1 (19/668) IncFIA.HI1._1_HI1 (3/668) IncFIB.AP001918._1 (622/668) IncFIB.pB171._1_pB171 (3/668) IncFIB.pQil._1_pQil (1/668) IncFIC.FII._1 (99/668) IncFII_1 (118/668) IncFII.29._1_pUTI89 (182/668) IncFII.pCoo._1_pCoo (5/668) IncFII.pHN7A8._1_pHN7A8 (5/668) IncFII.pRSB107._1_pRSB107 (21/668) IncHI1A_1 (2/668) IncHI1B.R27._1_R27 (2/668) IncHI2_1 (6/668) IncHI2A_1 (6/668) IncI_Gamma_1 (11/668) IncI1_1_Alpha (16/668) IncI2_1_Delta (6/668) IncN_1 (4/668) IncN3_1 (5/668) IncX1_1 (14/668) IncX1_4 (4/668) IncX3_1 (1/668) IncX4_1 (1/668) IncY_1 (15/668) p0111_1 (23/668) rep16_2_CDS6.pSJH101. (1/668) rep19_3_CDS20.pSJH901. (1/668) rep21_22_CDS1.pUSA01. (1/668) AAC.3..IId (9/668) AAC.3..IIe (2/668) AAC.3..VIa (1/668) AAC.6...Ib7 (1/668) AAC.6...IIc (2/668) aadA2 (20/668) aadA5 (14/668) ANT.2....Ia (2/668) ANT.3....IIa (14/668) APH.3....Ib (92/668) APH.3...Ia (14/668) APH.3...IIa (4/668) APH.3...VI (1/668) APH.6..Id (66/668) armA (1/668) catII_from_Escherichia_coli_K.12 (2/668) cmlA1 (11/668) CMY.59 (2/668) CTX.M.1 (1/668) CTX.M.14 (9/668) CTX.M.15 (18/668) CTX.M.27 (2/668) CTX.M.3 (1/668) CTX.M.55 (3/668) dfrA1 (8/668) dfrA10 (2/668) dfrA12 (18/668) dfrA14 (12/668) dfrA17 (19/668) dfrA19 (1/668) dfrA5 (51/668) DHA.15 (1/668) ErmB (1/668) floR (5/668) FosA3 (1/668) IMP.26 (1/668) intI1 (98/668) linG (1/668) MCR.1 (2/668) MCR.9 (1/668) merA (84/668) mphA (17/668) mphC (1/668) msrA (1/668) NDM.1 (1/668) OXA.1 (2/668) OXA.9 (1/668) PC1_beta.lactamase_.blaZ. (1/668) qacH (12/668) QnrA1 (1/668) QnrB17 (2/668) QnrB4 (1/668) QnrB5 (1/668) QnrS1 (7/668) Shigella_flexneri_chloramphenicol_acetyltransferase (6/668) SHV.134 (3/668) sul1 (51/668) sul2 (122/668) sul3 (11/668) TEM.1 (155/668) TEM.104 (1/668) TEM.116 (1/668) TEM.12 (1/668) TEM.122 (1/668) TEM.150 (4/668) TEM.30 (1/668) TEM.40 (1/668) terA (6/668) tet.A. (50/668) tet.B. (71/668) tet.C. (2/668) tet.D. (2/668) aslA (668/668) astA (33/668) bor_K12_U00096 (16/668) cba_pAPEC.O1.ColBM_DQ381420 (44/668) cbi_pAPEC.O1.ColBM_DQ381420 (42/668) cdtA (15/668) cdtB (15/668) cdtC (15/668) cjrA_pUTI89_NC_007941 (268/668) cjrB_pUTI89_NC_007941 (268/668) cjrC_pUTI89_NC_007941 (267/668) cma_pAPEC.O1.ColBM_DQ381420 (42/668) cmi_pAPEC.O1.ColBM_DQ381420 (45/668) cnf1 (76/668) cvaA_AY545598.5 (319/668) cvaB_AY545598.5 (325/668) cvaC_X57525.1 (319/668) cvi_AY545598.5 (315/668) eitA_AY545598.5 (47/668) eitA_KU695535.1 (63/668) espP (1/668) etsA_KU578032 (305/668) faeC (1/668) fdeC (667/668) fecA_NC_000913.3 (284/668) fepA (667/668) fepG (667/668) fes (667/668) fimH (668/668) focG (1/668) focH (4/668) fyuA (665/668) gimB.marker_CP002167.1 (576/668) gspC (665/668) hek_.VFG1539 (128/668) hlyA (92/668) hlyB (97/668) hlyC (94/668) hlyD (95/668) hylF_CP000836.1 (336/668) ibeA (182/668) ibeA_AY248744.1 (182/668) iha_O157.H7_NC_002695 (2/668) intI2_MF150120.1 (6/668) ireA_AF320691 (516/668) iroE (398/668) iroN (388/668) irp1 (653/668) irp2 (659/668) iss_type1_pAPEC.O2.ColV (4/668) iss_type3_UTI89_CP000243 (646/668) iucD (348/668) iutA (16/668) iutA_KU578032.1 (330/668) kpsD (664/668) kpsM (662/668) kpsMT.II._K2.CP000468.1..APEC.O1.3376659.3378102 (655/668) kpsT (651/668) neuC_CP007275.1 (593/668) ompA (668/668) ompT_chromosomal_O157.H7_NC_002695 (567/668) ompT_episomal_HM210637.1 (324/668) papA_CU928161 (504/668) papB_CU928161 (585/668) papC (585/668) papC_CU928161 (584/668) papD_CU928161 (593/668) papE_CU928161 (517/668) papF_CU928161 (594/668) papG (512/668) papGII_CP018957.1.402750.403761 (1/668) papGII_CU928161 (25/668) papGII_DQ095216.1 (486/668) papGIII_CP010151.1.3421241.3422500 (70/668) papH_CU928161 (585/668) papI_DQ095216.1 (487/668) papJ_CU928161 (594/668) papK_CU928161 (594/668) senB (270/668) senB_pUTI89_NC_007941 (270/668) sfaS (101/668) shiD_.VFG0611 (2/668) sigA (3/668) silA_KU248945.1 (1/668) sitA stcE (1/668) stx2A (1/668) stx2B (1/668) tcpC (215/668) tia_CP019944.1 (4/668) tia_CU928161 (517/668) tir (1/668) traT_CP018978.1 (619/668) tsh_gi_88770206 (9/668) usp_AB056439 (668/668) vat (545/668) yagV.ecpE (667/668) ybtA (665/668) pointfinder_16S (rrsH) r.1192C>T pointfinder_ampC promoter n.-16_-15insGT pointfinder_ampC promoter n.-32T>A pointfinder_folP p.P64S pointfinder_gyrA p.D87G pointfinder_gyrA p.D87N pointfinder_gyrA p.D87Y pointfinder_gyrA p.S83L pointfinder_parC p.E84K pointfinder_parC p.G78C pointfinder_parC p.S80I IncA/C_PMLST IncF_RST IncHI2_DLST IncI1_MLST IncN_MLST Level_1 Level_2 clade_label ESC_BA8511AA_AS No ESC_BA7670AA eo1679 ERR435341;ILLUMINA;Paired;227;ERX401616 Human 2007 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA THE SANGER CENTER Escherichia coli NA NA NA NA NA NA NA PRJEB4681 ERP003992 NA SAMEA2205187 ERS357698 27/8/15 14/5/14 ESC_BA7670AA Assembled 0 222284 5504113 Escherichia coli / Shigella;98.51% 163 2431 2.2 ESC_BA8511AA_AS 9838 9838 9838 9838 9838 1106 1104 1104 44 44 44 1 1 ESC_BA7670AA eo1679 ERR435341;ILLUMINA;Paired;227;ERX401616 Human 2007 SEPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F24:B- 3 10_fastbaps 44_fastbaps I ESC_GA5350AA_AS No ESC_CA9632AA BS14 traces-0FKfrhe;ILLUMINA;Paired;;NA Human 2015 SEPEC Human Human Blood 2015 NA NA NA Oceania Australia Australian Capital Territory NA Canberra NA NA NA David Gordon Escherichia coli NA NA NA Pathogen ExPEC Septicemia NA NA NA Septicemia NA NA 5/4/16 4/10/16 ESC_CA9632AA Assembled 42 56198 5226493 Escherichia coli / Shigella;97.68% 269 16297 3.41 ESC_GA5350AA_AS 1106 1106 1106 1106 1106 1106 1104 1104 44 44 44 1 1 ESC_CA9632AA BS14 traces-0FKfrhe;ILLUMINA;Paired;;NA Human 2015 SEPEC HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 10_fastbaps 42_fastbaps I ESC_HA6420AA_AS No ESC_DA4337AA PA70B ERR445635;ILLUMINA;Paired;367;ERX412399 Human ---- UPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIDRC Escherichia coli NA NA NA NA NA NA NA PRJEB5742 ERP005166 NA SAMEA2392734 ERS416954 1/7/16 11/3/16 ESC_DA4337AA Assembled 248 187195 5433061 Escherichia coli / Shigella;98.95% 148 1096 3.41 ESC_HA6420AA_AS 26478 26478 26478 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_DA4337AA PA70B ERR445635;ILLUMINA;Paired;367;ERX412399 Human ---- UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_HA6418AA_AS No ESC_DA4339AA PA47B ERR445633;ILLUMINA;Paired;374;ERX412397 Human ---- UPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIDRC Escherichia coli NA NA NA NA NA NA NA PRJEB5742 ERP005166 NA SAMEA2392732 ERS416952 1/7/16 11/3/16 ESC_DA4339AA Assembled 296 323075 5392049 Escherichia coli / Shigella;97.88% 143 2485 3.41 ESC_HA6418AA_AS 26476 26476 26476 26476 26404 1106 1104 1104 44 44 44 1 1 ESC_DA4339AA PA47B ERR445633;ILLUMINA;Paired;374;ERX412397 Human ---- UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 10_fastbaps 42_fastbaps I ESC_HA6413AA_AS No ESC_DA4344AA PA11B ERR445628;ILLUMINA;Paired;393;ERX412392 Human ---- UPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIDRC Escherichia coli NA NA NA NA NA NA NA PRJEB5742 ERP005166 NA SAMEA2392727 ERS416947 1/7/16 11/3/16 ESC_DA4344AA Assembled 177 203930 5311823 Escherichia coli / Shigella;98.98% 160 1374 3.41 ESC_HA6413AA_AS 26471 26471 26471 26404 26404 1106 1104 1104 44 44 44 1 1 ESC_DA4344AA PA11B ERR445628;ILLUMINA;Paired;393;ERX412392 Human ---- UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 10_fastbaps 42_fastbaps I ESC_HA6411AA_AS No ESC_DA4346AA PA63B ERR445626;ILLUMINA;Paired;374;ERX412390 Human ---- UPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIDRC Escherichia coli NA NA NA NA NA NA NA PRJEB5742 ERP005166 NA SAMEA2392725 ERS416945 1/7/16 11/3/16 ESC_DA4346AA Assembled 253 259101 5210025 Escherichia coli / Shigella;100.0% 117 1411 3.41 ESC_HA6411AA_AS 26469 26469 26469 26469 26469 1106 1104 1104 44 44 44 1 1 ESC_DA4346AA PA63B ERR445626;ILLUMINA;Paired;374;ERX412390 Human ---- UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_HA6342AA_AS No ESC_DA4364AA PA28B ERR445608;ILLUMINA;Paired;392;ERX412372 Human ---- UPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIDRC Escherichia coli NA NA NA NA NA NA NA PRJEB5742 ERP005166 NA SAMEA2392707 ERS416927 1/7/16 11/3/16 ESC_DA4364AA Assembled 118 323079 5405498 Escherichia coli / Shigella;99.1% 178 1347 3.41 ESC_HA6342AA_AS 26404 26404 26404 26404 26404 1106 1104 1104 44 44 44 1 1 ESC_DA4364AA PA28B ERR445608;ILLUMINA;Paired;392;ERX412372 Human ---- UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 10_fastbaps 42_fastbaps I ESC_HA6332AA_AS No ESC_DA4374AA PA8B ERR445598;ILLUMINA;Paired;388;ERX412362 Human ---- UPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA AIDRC Escherichia coli NA NA NA NA NA NA NA PRJEB5742 ERP005166 NA SAMEA2392697 ERS416917 1/7/16 11/3/16 ESC_DA4374AA Assembled 169 210720 5470707 Escherichia coli / Shigella;98.92% 145 1542 3.41 ESC_HA6332AA_AS 26393 26393 26393 26393 9838 1106 1104 1104 44 44 44 1 1 ESC_DA4374AA PA8B ERR445598;ILLUMINA;Paired;388;ERX412362 Human ---- UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 10_fastbaps 42_fastbaps I ESC_IA0811AA_AS No ESC_EA4696AA 1.10-R8 SRR4067502;ILLUMINA;Paired;;SRX2054706 Human 2012 Faecal Human Human Homo sapiens; human faeces 2012 NA NA NA Oceania Australia New South Wales NA Sydney NA NA NA University of Melbourne Escherichia coli NA NA NA NA NA NA NA PRJNA335932 SRP082992 NA SAMN05567340 SRS1646779 2/9/16 1/9/16 ESC_EA4696AA Assembled 120 203926 5323253 Escherichia coli / Shigella;98.1% 169 1719 3.51 ESC_IA0811AA_AS 29942 29942 29942 29942 26404 1106 1104 1104 44 44 44 1 1 ESC_EA4696AA 1.10-R8 SRR4067502;ILLUMINA;Paired;;SRX2054706 Human 2012 Faecal HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 10_fastbaps 42_fastbaps I ESC_NA4072AA_AS No ESC_GA4494AA W4-33 SRR5512250;ILLUMINA;Paired;;SRX2786219 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893793 SRS2168223 5/5/17 5/5/17 ESC_GA4494AA Assembled 45 110070 5215533 Escherichia coli / Shigella;98.96% 131 17151 3.61 ESC_NA4072AA_AS 45089 45006 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4494AA W4-33 SRR5512250;ILLUMINA;Paired;;SRX2786219 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4071AA_AS No ESC_GA4495AA W4-32 SRR5512249;ILLUMINA;Paired;;SRX2786218 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893792 SRS2168222 5/5/17 5/5/17 ESC_GA4495AA Assembled 43 110287 5287788 Escherichia coli / Shigella;99.1% 140 17720 3.61 ESC_NA4071AA_AS 45081 45005 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4495AA W4-32 SRR5512249;ILLUMINA;Paired;;SRX2786218 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4070AA_AS No ESC_GA4496AA W2-53 SRR5512248;ILLUMINA;Paired;;SRX2786217 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893791 SRS2168221 5/5/17 5/5/17 ESC_GA4496AA Assembled 38 107675 5256331 Escherichia coli / Shigella;94.8% 216 28096 3.61 ESC_NA4070AA_AS 45082 45082 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4496AA W2-53 SRR5512248;ILLUMINA;Paired;;SRX2786217 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4069AA_AS No ESC_GA4497AA W2-49 SRR5512247;ILLUMINA;Paired;;SRX2786216 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893790 SRS2168220 5/5/17 5/5/17 ESC_GA4497AA Assembled 22 88870 5213741 Escherichia coli / Shigella;98.33% 159 40136 3.61 ESC_NA4069AA_AS 45083 45083 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4497AA W2-49 SRR5512247;ILLUMINA;Paired;;SRX2786216 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4068AA_AS No ESC_GA4498AA W2-47 SRR5512246;ILLUMINA;Paired;;SRX2786215 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893789 SRS2168219 5/5/17 5/5/17 ESC_GA4498AA Assembled 63 178222 5229579 Escherichia coli / Shigella;98.34% 85 4108 3.61 ESC_NA4068AA_AS 45084 45006 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4498AA W2-47 SRR5512246;ILLUMINA;Paired;;SRX2786215 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4067AA_AS No ESC_GA4499AA W1-58 SRR5512245;ILLUMINA;Paired;;SRX2786214 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893788 SRS2168217 5/5/17 5/5/17 ESC_GA4499AA Assembled 54 120852 5229026 Escherichia coli / Shigella;98.8% 112 6117 3.61 ESC_NA4067AA_AS 45093 45006 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4499AA W1-58 SRR5512245;ILLUMINA;Paired;;SRX2786214 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4066AA_AS No ESC_GA4500AA M710019 SRR5512244;ILLUMINA;Paired;;SRX2786213 Human 2015 Faecal Human Human Homo sapiens; Human faecal 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893787 SRS2168218 5/5/17 5/5/17 ESC_GA4500AA Assembled 66 162637 5339866 Escherichia coli / Shigella;96.52% 161 4370 3.61 ESC_NA4066AA_AS 45092 45092 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4500AA M710019 SRR5512244;ILLUMINA;Paired;;SRX2786213 Human 2015 Faecal HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4064AA_AS No ESC_GA4502AA M675220 SRR5512242;ILLUMINA;Paired;;SRX2786211 Human 2015 Faecal Human Human Homo sapiens; Human faecal 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893785 SRS2168215 5/5/17 5/5/17 ESC_GA4502AA Assembled 40 57399 5513981 Escherichia coli / Shigella;97.45% 294 23115 3.61 ESC_NA4064AA_AS 45076 45076 45076 45076 9838 1106 1104 1104 44 44 44 1 1 ESC_GA4502AA M675220 SRR5512242;ILLUMINA;Paired;;SRX2786211 Human 2015 Faecal HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 10_fastbaps 42_fastbaps I ESC_NA4063AA_AS No ESC_GA4503AA M673438 SRR5512241;ILLUMINA;Paired;;SRX2786210 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893784 SRS2168214 5/5/17 5/5/17 ESC_GA4503AA Assembled 57 105236 5229221 Escherichia coli / Shigella;98.17% 159 12776 3.61 ESC_NA4063AA_AS 45087 45087 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4503AA M673438 SRR5512241;ILLUMINA;Paired;;SRX2786210 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4061AA_AS No ESC_GA4505AA M671335 SRR5512239;ILLUMINA;Paired;;SRX2786208 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893783 SRS2168212 5/5/17 5/5/17 ESC_GA4505AA Assembled 44 177073 5274435 Escherichia coli / Shigella;76.38% 198 22151 3.61 ESC_NA4061AA_AS 45075 45075 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4505AA M671335 SRR5512239;ILLUMINA;Paired;;SRX2786208 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4056AA_AS No ESC_GA4510AA M663940 SRR5512234;ILLUMINA;Paired;;SRX2786203 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893778 SRS2168207 5/5/17 5/5/17 ESC_GA4510AA Assembled 49 169953 5317924 Escherichia coli / Shigella;80.82% 191 19510 3.61 ESC_NA4056AA_AS 45088 45088 45088 45088 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4510AA M663940 SRR5512234;ILLUMINA;Paired;;SRX2786203 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4055AA_AS No ESC_GA4511AA M663475 SRR5512233;ILLUMINA;Paired;;SRX2786202 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893777 SRS2168206 5/5/17 5/5/17 ESC_GA4511AA Assembled 56 140010 5217269 Escherichia coli / Shigella;98.97% 134 5689 3.61 ESC_NA4055AA_AS 45072 45072 45072 45072 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4511AA M663475 SRR5512233;ILLUMINA;Paired;;SRX2786202 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4053AA_AS No ESC_GA4513AA M660876 SRR5512231;ILLUMINA;Paired;;SRX2786200 Human 2015 Faecal Human Human Homo sapiens; Human faecal 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893775 SRS2168204 5/5/17 5/5/17 ESC_GA4513AA Assembled 64 38742 5360331 Escherichia coli / Shigella;99.45% 283 25302 3.61 ESC_NA4053AA_AS 45071 45071 45071 45071 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4513AA M660876 SRR5512231;ILLUMINA;Paired;;SRX2786200 Human 2015 Faecal HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4052AA_AS No ESC_GA4514AA M660875 SRR5512230;ILLUMINA;Paired;;SRX2786199 Human 2015 Faecal Human Human Homo sapiens; Human faecal 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893774 SRS2168203 5/5/17 5/5/17 ESC_GA4514AA Assembled 41 59204 5408119 Escherichia coli / Shigella;75.53% 285 26408 3.61 ESC_NA4052AA_AS 45079 45079 45071 45071 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4514AA M660875 SRR5512230;ILLUMINA;Paired;;SRX2786199 Human 2015 Faecal HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4048AA_AS No ESC_GA4518AA M652995 SRR5512226;ILLUMINA;Paired;;SRX2786195 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893771 SRS2168197 5/5/17 5/5/17 ESC_GA4518AA Assembled 68 65444 5234868 Escherichia coli / Shigella;98.71% 226 28201 3.61 ESC_NA4048AA_AS 45066 45066 45066 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4518AA M652995 SRR5512226;ILLUMINA;Paired;;SRX2786195 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 10_fastbaps 44_fastbaps I ESC_NA4046AA_AS No ESC_GA4520AA M644693 SRR5512224;ILLUMINA;Paired;;SRX2786193 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893769 SRS2168198 5/5/17 5/5/17 ESC_GA4520AA Assembled 54 156613 5178647 Escherichia coli / Shigella;98.7% 115 4737 3.61 ESC_NA4046AA_AS 45069 45069 45069 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4520AA M644693 SRR5512224;ILLUMINA;Paired;;SRX2786193 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 10_fastbaps 44_fastbaps I ESC_NA4045AA_AS No ESC_GA4521AA M638866 SRR5512223;ILLUMINA;Paired;;SRX2786192 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893768 SRS2168199 5/5/17 5/5/17 ESC_GA4521AA Assembled 75 110733 5220608 Escherichia coli / Shigella;99.1% 158 12292 3.61 ESC_NA4045AA_AS 45068 45019 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4521AA M638866 SRR5512223;ILLUMINA;Paired;;SRX2786192 Human 2015 UPEC HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4035AA_AS No ESC_GA4531AA H358 SRR5512213;ILLUMINA;Paired;;SRX2786182 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893759 SRS2168187 5/5/17 5/5/17 ESC_GA4531AA Assembled 93 204006 5176574 Escherichia coli / Shigella;100.0% 79 4427 3.61 ESC_NA4035AA_AS 45058 45058 45058 45058 9838 1106 1104 1104 44 44 44 1 1 ESC_GA4531AA H358 SRR5512213;ILLUMINA;Paired;;SRX2786182 Human 2001 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 42_fastbaps I ESC_NA4005AA_AS No ESC_GA4561AA C4-35 SRR5512183;ILLUMINA;Paired;;SRX2786152 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893732 SRS2168156 5/5/17 5/5/17 ESC_GA4561AA Assembled 22 46575 5187134 Escherichia coli / Shigella;99.38% 250 52128 3.61 ESC_NA4005AA_AS 45028 45019 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4561AA C4-35 SRR5512183;ILLUMINA;Paired;;SRX2786152 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4004AA_AS No ESC_GA4562AA C4-34 SRR5512182;ILLUMINA;Paired;;SRX2786151 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893731 SRS2168155 5/5/17 5/5/17 ESC_GA4562AA Assembled 53 131546 5223263 Escherichia coli / Shigella;98.99% 134 16597 3.61 ESC_NA4004AA_AS 45038 45019 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4562AA C4-34 SRR5512182;ILLUMINA;Paired;;SRX2786151 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4003AA_AS No ESC_GA4563AA C4-33 SRR5512181;ILLUMINA;Paired;;SRX2786150 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893730 SRS2168154 5/5/17 5/5/17 ESC_GA4563AA Assembled 22 59684 5194347 Escherichia coli / Shigella;99.26% 185 46708 3.61 ESC_NA4003AA_AS 45019 45019 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4563AA C4-33 SRR5512181;ILLUMINA;Paired;;SRX2786150 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA4000AA_AS No ESC_GA4566AA C2-117 SRR5512178;ILLUMINA;Paired;;SRX2786147 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893727 SRS2168151 5/5/17 5/5/17 ESC_GA4566AA Assembled 33 49926 5188089 Escherichia coli / Shigella;99.37% 230 44331 3.61 ESC_NA4000AA_AS 45023 45023 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4566AA C2-117 SRR5512178;ILLUMINA;Paired;;SRX2786147 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3999AA_AS No ESC_GA4567AA C2-110 SRR5512177;ILLUMINA;Paired;;SRX2786146 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893726 SRS2168150 5/5/17 5/5/17 ESC_GA4567AA Assembled 40 34922 5179712 Escherichia coli / Shigella;90.7% 304 54693 3.61 ESC_NA3999AA_AS 45020 45020 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4567AA C2-110 SRR5512177;ILLUMINA;Paired;;SRX2786146 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3992AA_AS No ESC_GA4574AA BS36 SRR5512170;ILLUMINA;Paired;;SRX2786139 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893720 SRS2168142 5/5/17 5/5/17 ESC_GA4574AA Assembled 64 150456 5345968 Escherichia coli / Shigella;95.79% 125 7782 3.61 ESC_NA3992AA_AS 45027 45027 45027 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4574AA BS36 SRR5512170;ILLUMINA;Paired;;SRX2786139 Human 2014 SEPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3982AA_AS No ESC_GA4584AA A1-66 SRR5512160;ILLUMINA;Paired;;SRX2786129 Poultry 2010 RMAE Animal Feed NA Poultry; Retail poultry meat 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893711 SRS2168133 5/5/17 5/5/17 ESC_GA4584AA Assembled 52 132121 5321969 Escherichia coli / Shigella;98.75% 112 8669 3.61 ESC_NA3982AA_AS 45013 45013 45013 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4584AA A1-66 SRR5512160;ILLUMINA;Paired;;SRX2786129 Poultry 2010 RMAE HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3980AA_AS No ESC_GA4586AA 62-2-TI6 SRR5512158;ILLUMINA;Paired;;SRX2786127 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893709 SRS2168131 5/5/17 5/5/17 ESC_GA4586AA Assembled 83 99955 5245719 Escherichia coli / Shigella;100.0% 159 13249 3.61 ESC_NA3980AA_AS 45016 22010 22010 22010 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4586AA 62-2-TI6 SRR5512158;ILLUMINA;Paired;;SRX2786127 Human 2010 Faecal HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3975AA_AS No ESC_GA4591AA W4-39 SRR5512153;ILLUMINA;Paired;;SRX2786122 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893796 SRS2168126 5/5/17 5/5/17 ESC_GA4591AA Assembled 38 83109 5337099 Escherichia coli / Shigella;81.6% 227 29922 3.61 ESC_NA3975AA_AS 45106 45106 45106 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4591AA W4-39 SRR5512153;ILLUMINA;Paired;;SRX2786122 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3974AA_AS No ESC_GA4592AA W4-37 SRR5512152;ILLUMINA;Paired;;SRX2786121 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893795 SRS2168125 5/5/17 5/5/17 ESC_GA4592AA Assembled 46 115088 5215133 Escherichia coli / Shigella;98.92% 118 18934 3.61 ESC_NA3974AA_AS 45005 45005 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4592AA W4-37 SRR5512152;ILLUMINA;Paired;;SRX2786121 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3973AA_AS No ESC_GA4593AA W4-35 SRR5512151;ILLUMINA;Paired;;SRX2786120 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893794 SRS2168124 5/5/17 5/5/17 ESC_GA4593AA Assembled 28 72953 5274935 Escherichia coli / Shigella;99.18% 171 34299 3.61 ESC_NA3973AA_AS 45006 45006 45005 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4593AA W4-35 SRR5512151;ILLUMINA;Paired;;SRX2786120 Poultry 2014 RMAE HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_NA3971AA_AS No ESC_GA4595AA 2H-276-5 SRR5512149;ILLUMINA;Paired;;SRX2786118 Human 2011 Faecal Human Human Homo sapiens; Human faecal 2011 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893695 SRS2168122 5/5/17 5/5/17 ESC_GA4595AA Assembled 26 39298 5264352 Escherichia coli / Shigella;99.41% 265 60903 3.61 ESC_NA3971AA_AS 45007 45007 45007 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_GA4595AA 2H-276-5 SRR5512149;ILLUMINA;Paired;;SRX2786118 Human 2011 Faecal HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_SA8312AA_AS Yes ESC_JA5679AA Chicken SRR7469829;ILLUMINA;Paired;;SRX4339681 Poultry 2012 APEC Poultry Avian Gallus gallus domesticus 2012 11 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA O1:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09580041 SRS3500580 4/7/18 4/7/18 ESC_JA5679AA Assembled 54 225326 5411483 Escherichia coli / Shigella;98.08% 178 41640 4 ESC_SA8312AA_AS 70307 70307 70307 70307 9838 1106 1104 1104 44 44 44 1 1 ESC_JA5679AA Chicken SRR7469829;ILLUMINA;Paired;;SRX4339681 Poultry 2012 APEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 10_fastbaps 42_fastbaps I ESC_SA8296AA_AS Yes ESC_JA5695AA Chicken SRR7469845;ILLUMINA;Paired;;SRX4339665 Poultry 2014 APEC Poultry Avian Gallus gallus domesticus 2014 7 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA Ont:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09580048 SRS3500566 4/7/18 4/7/18 ESC_JA5695AA Assembled 74 87351 5321399 Escherichia coli / Shigella;99.22% 196 45532 4 ESC_SA8296AA_AS 70311 70311 70311 69262 69262 1106 1104 1104 44 44 44 1 1 ESC_JA5695AA Chicken SRR7469845;ILLUMINA;Paired;;SRX4339665 Poultry 2014 APEC HC50-1106 1104 1104 1106 fimH27 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_SA8291AA_AS Yes ESC_JA5700AA Chicken SRR7469850;ILLUMINA;Paired;;SRX4339660 Poultry 2015 APEC Poultry Avian Gallus gallus domesticus 2015 7 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA Ont:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09580053 SRS3500558 4/7/18 4/7/18 ESC_JA5700AA Assembled 59 94269 5322243 Escherichia coli / Shigella;98.36% 193 39040 4 ESC_SA8291AA_AS 69262 69262 69262 69262 69262 1106 1104 1104 44 44 44 1 1 ESC_JA5700AA Chicken SRR7469850;ILLUMINA;Paired;;SRX4339660 Poultry 2015 APEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_SA8273AA_AS Yes ESC_JA5718AA Chicken SRR7469868;ILLUMINA;Paired;;SRX4339642 Poultry 2009 APEC Poultry Avian Gallus gallus domesticus 2009 2 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA Ont:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09579990 SRS3500543 4/7/18 4/7/18 ESC_JA5718AA Assembled 49 176526 5369129 Escherichia coli / Shigella;96.4% 152 50554 4 ESC_SA8273AA_AS 70276 70276 70276 70276 70276 1106 1104 1104 44 44 44 1 1 ESC_JA5718AA Chicken SRR7469868;ILLUMINA;Paired;;SRX4339642 Poultry 2009 APEC HC50-1106 1104 1104 1106 fimH27 O153 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 F2:B1 07_fastbaps 25_fastbaps H ESC_SA8250AA_AS Yes ESC_JA5741AA Poultry animal (variety unknown) SRR7469891;ILLUMINA;Paired;;SRX4339619 Poultry 2010 APEC NA NA NA 2010 10 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA Ont:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09580011 SRS3500518 4/7/18 4/7/18 ESC_JA5741AA Assembled 61 191692 5312787 Escherichia coli / Shigella;95.86% 134 58206 4 ESC_SA8250AA_AS 70288 70288 70288 70288 70288 1106 1104 1104 44 44 44 1 1 ESC_JA5741AA Poultry animal (variety unknown) SRR7469891;ILLUMINA;Paired;;SRX4339619 Poultry 2010 APEC HC50-1106 1104 1104 1106 fimH27 O153 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 F2:B1 07_fastbaps 25_fastbaps H ESC_SA8243AA_AS Yes ESC_JA5748AA Chicken SRR7469898;ILLUMINA;Paired;;SRX4339612 Poultry 2010 APEC Poultry Avian Gallus gallus domesticus 2010 9 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA Ont:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09580010 SRS3500510 4/7/18 4/7/18 ESC_JA5748AA Assembled 42 191864 5383354 Escherichia coli / Shigella;97.41% 145 85362 4 ESC_SA8243AA_AS 69236 69236 69236 69236 69236 1106 1104 1104 44 44 44 1 1 ESC_JA5748AA Chicken SRR7469898;ILLUMINA;Paired;;SRX4339612 Poultry 2010 APEC HC50-1106 1104 1104 1106 fimH27 O153 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 F2:B1 07_fastbaps 25_fastbaps H ESC_VA0598AA_AS No ESC_KA6836AA NA ERR2910020;ILLUMINA;Paired;450;ERX2913180 Human ---- ExPEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Wellcome Sanger Institute Escherichia coli NA NA NA NA NA NA NA PRJEB22030 ERP024349 NA SAMEA104305508 ERS1930486 2/12/18 23/11/18 ESC_KA6836AA Assembled 66 204005 5425229 Escherichia coli / Shigella;93.93% 94 11746 4 ESC_VA0598AA_AS 78857 78857 78857 9838 9838 1106 1104 1104 44 44 44 1 1 ESC_KA6836AA NA ERR2910020;ILLUMINA;Paired;450;ERX2913180 Human ---- NMEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_GB6943AA_AS Yes ESC_PA0993AA EC68_ST95C SRR7967899;ILLUMINA;Paired;;SRX4801399 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 5 NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180260 SRS3880450 18/11/19 4/10/19 ESC_PA0993AA Assembled 61 250605 5359872 Escherichia coli / Shigella;97.34% 108 24650 4.1 ESC_GB6943AA_AS 121467 121467 45013 26478 22010 1106 1104 1104 44 44 44 1 1 ESC_PA0993AA EC68_ST95C SRR7967899;ILLUMINA;Paired;;SRX4801399 Human 2013 SEPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 10_fastbaps 44_fastbaps I ESC_HB8007AA_AS No ESC_PA6369AA ECOL-19-VL-OH-WA-0011 SRR10810353;ILLUMINA;Paired;500;SRX7483857 Canine 2019 UPEC Companion Animal Canine Urine (Canis lupus) 2019 3 NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA318589 SRP115288 NA SAMN13703479 SRS5926531 1/1/20 31/12/19 ESC_PA6369AA Assembled 116 87512 5383442 Escherichia coli / Shigella;98.77% 233 50328 4.1 ESC_HB8007AA_AS 124775 124775 124775 124775 124775 1106 1104 1104 44 44 44 1 1 ESC_PA6369AA ECOL-19-VL-OH-WA-0011 SRR10810353;ILLUMINA;Paired;500;SRX7483857 Canine 2019 UPEC HC50-1106 1104 1104 1106 fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F35:B1 10_fastbaps 44_fastbaps I ESC_BA7454AA_AS No ESC_BA0671AA KH013 DRR033777;ILLUMINA;Paired;0;DRX030497 Other 2011 Faecal Companion Animal NA septic tank 2011 NA NA NA Asia Japan NA NA NA NA NA NA KYOTO_PREF Escherichia coli NA NA NA NA NA NA NA PRJDB3552 DRP002628 NA SAMD00029127 DRS019515 27/8/15 28/4/15 ESC_BA0671AA Assembled 54.26 221596 5195344 Escherichia coli / Shigella;98.74% 85 7774 2.2 ESC_BA7454AA_AS 15022 15022 15022 12576 12576 12576 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 09_fastbaps 39_fastbaps G ESC_CA6119AA_AS No ESC_BA4723AA AZ-TG73711 SRR1505444;ILLUMINA;Paired;500;SRX644970 Poultry 2013 RMAE Poultry Avian Thin Sliced Chicken Breast 2013 7 NA NA North America United States Illinois NA NA NA NA NA "FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION" Escherichia coli NA NA NA NA NA NA NA PRJNA230968 SRP038995 NA SAMN02628681 SRS653157 27/8/15 2/7/14 ESC_BA4723AA Assembled 82.7 204006 5324320 Escherichia coli / Shigella;85.29% 115 4435 2.2 ESC_CA6119AA_AS 12264 12264 12264 12264 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 12 08_fastbaps 35_fastbaps C ESC_CA4830AA_AS No ESC_BA4877AA upec-98 SRR1314597;ILLUMINA;Paired;;SRX560614 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802194 SRS624909 27/8/15 26/10/14 ESC_BA4877AA Assembled 59.67 411768 5125850 Escherichia coli / Shigella;100.0% 94 3515 2.2 ESC_CA4830AA_AS 12134 12134 12134 12134 12134 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_CA3085AA_AS No ESC_BA4884AA upec-94 SRR1314593;ILLUMINA;Paired;;SRX560610 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802190 SRS624906 27/8/15 26/10/14 ESC_BA4884AA Assembled 53.66 100952 4967238 Escherichia coli / Shigella;99.46% 178 7822 2.2 ESC_CA3085AA_AS 12125 12125 12125 12125 12125 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 03_fastbaps 11_fastbaps E ESC_BA3227AA_AS No ESC_BA4916AA upec-8 SRR1314577;ILLUMINA;Paired;;SRX560594 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802174 SRS624890 27/8/15 26/10/14 ESC_BA4916AA Assembled 69.35 171592 4976243 Escherichia coli / Shigella;100.0% 107 3395 2.2 ESC_BA3227AA_AS 12098 12098 12098 12098 12098 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 17_fastbaps A ESC_BA1000AA_AS No ESC_BA4926AA upec-75 SRR1314572;ILLUMINA;Paired;;SRX560589 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802169 SRS624885 27/8/15 26/10/14 ESC_BA4926AA Assembled 121.72 229460 5116201 Escherichia coli / Shigella;96.55% 85 1998 2.2 ESC_BA1000AA_AS 12089 12089 12089 12089 12089 12089 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_BA8190AA_AS No ESC_BA4930AA upec-73 SRR1314570;ILLUMINA;Paired;;SRX560587 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802167 SRS624883 27/8/15 26/10/14 ESC_BA4930AA Assembled 68.38 181186 5064459 Escherichia coli / Shigella;100.0% 102 2865 2.2 ESC_BA8190AA_AS 12084 12084 12084 12084 12084 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_CA0637AA_AS No ESC_BA4933AA upec-72 SRR1314569;ILLUMINA;Paired;;SRX560586 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802166 SRS624882 27/8/15 26/10/14 ESC_BA4933AA Assembled 44.52 88825 5065356 Escherichia coli / Shigella;91.95% 178 8298 2.2 ESC_CA0637AA_AS 12081 12081 12081 12081 12081 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F34:B- 05_fastbaps 18_fastbaps A ESC_BA3061AA_AS No ESC_BA4981AA upec-51 SRR1314546;ILLUMINA;Paired;;SRX560563 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802143 SRS624859 27/8/15 26/10/14 ESC_BA4981AA Assembled 90.09 185937 5060984 Escherichia coli / Shigella;95.05% 98 1587 2.2 ESC_BA3061AA_AS 12042 12042 12042 12042 12042 4921 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_BA2574AA_AS No ESC_BA5095AA upec-255 SRR1314484;ILLUMINA;Paired;;SRX560501 Human 2012 UPEC Human Human patient with urinary tract infection; Homo sapiens 2012 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802081 SRS624797 27/8/15 26/10/14 ESC_BA5095AA Assembled 60.45 175923 5131443 Escherichia coli / Shigella;99.08% 109 2797 2.2 ESC_BA2574AA_AS 11949 11949 11949 11949 11949 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_BA6731AA_AS No ESC_BA5102AA upec-249 SRR1314477;ILLUMINA;Paired;;SRX560494 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802074 SRS624790 27/8/15 26/10/14 ESC_BA5102AA Assembled 138.44 203908 5102711 Escherichia coli / Shigella;100.0% 135 2157 2.2 ESC_BA6731AA_AS 11948 11948 11816 11816 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 03_fastbaps 08_fastbaps E ESC_CA6171AA_AS No ESC_BA5111AA upec-240 SRR1314468;ILLUMINA;Paired;;SRX560485 Human 2011 UPEC Human Human patient with urinary tract infection; Homo Sapiens 2011 NA NA NA North America United States NA NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802065 SRS624781 27/8/15 26/10/14 ESC_BA5111AA Assembled 797.03 171578 5201717 Escherichia coli / Shigella;99.17% 118 1382 2.2 ESC_CA6171AA_AS 11944 11944 11944 11944 11944 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B- 06_fastbaps 22_fastbaps B ESC_CA6770AA_AS No ESC_BA5146AA upec-209 SRR1314433;ILLUMINA;Paired;;SRX560450 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802030 SRS624746 27/8/15 26/10/14 ESC_BA5146AA Assembled 24.72 154216 5311951 Escherichia coli / Shigella;100.0% 127 8819 2.2 ESC_CA6770AA_AS 11922 11922 11922 11922 11922 11922 11922 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH15 O2/O50 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F24:B1 07_fastbaps 30_fastbaps H ESC_BA3967AA_AS No ESC_BA5160AA upec-197 SRR1314419;ILLUMINA;Paired;;SRX560436 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802016 SRS624732 27/8/15 26/10/14 ESC_BA5160AA Assembled 236.16 286193 5025537 Escherichia coli / Shigella;98.62% 78 1418 2.2 ESC_BA3967AA_AS 11911 11911 11911 11911 11911 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 17_fastbaps A ESC_CA5916AA_AS No ESC_BA5173AA upec-185 SRR1314406;ILLUMINA;Paired;;SRX560423 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02802003 SRS624719 27/8/15 26/10/14 ESC_BA5173AA Assembled 74.01 225250 5027246 Escherichia coli / Shigella;95.75% 153 3540 2.2 ESC_CA5916AA_AS 11905 11905 11905 11905 11905 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2/O50 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_BA5541AA_AS No ESC_BA5191AA upec-169 SRR1314388;ILLUMINA;Paired;;SRX560405 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801985 SRS624701 27/8/15 26/10/14 ESC_BA5191AA Assembled 123.2 203502 5132446 Escherichia coli / Shigella;100.0% 117 1750 2.2 ESC_BA5541AA_AS 11891 11891 11891 11891 11891 11891 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_CA2713AA_AS No ESC_BA5204AA upec-157 SRR1314375;ILLUMINA;Paired;;SRX560392 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801972 SRS624688 27/8/15 26/10/14 ESC_BA5204AA Assembled 58.22 261134 5191170 Escherichia coli / Shigella;100.0% 171 5088 2.2 ESC_CA2713AA_AS 11885 11885 11885 11885 11885 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_BA4389AA_AS No ESC_BA5218AA upec-144 SRR1314361;ILLUMINA;Paired;;SRX560378 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801958 SRS624674 27/8/15 26/10/14 ESC_BA5218AA Assembled 137.56 194201 5110115 Escherichia coli / Shigella;100.0% 135 1578 2.2 ESC_BA4389AA_AS 11871 11871 11871 11871 11871 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_AA9421AA_AS No ESC_BA5227AA upec-136 SRR1314352;ILLUMINA;Paired;;SRX560369 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801949 SRS624665 27/8/15 26/10/14 ESC_BA5227AA Assembled 44.87 348608 5256780 Escherichia coli / Shigella;100.0% 118 4680 2.2 ESC_AA9421AA_AS 11862 11862 11862 11862 11862 11862 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 07_fastbaps 32_fastbaps H ESC_BA1242AA_AS No ESC_BA5244AA upec-124 SRR1314339;ILLUMINA;Paired;;SRX560356 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801936 SRS624653 27/8/15 26/10/14 ESC_BA5244AA Assembled 30.89 182283 4959656 Escherichia coli / Shigella;100.0% 79 6662 2.2 ESC_BA1242AA_AS 11848 11848 11848 11848 11848 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 18_fastbaps A ESC_BA2267AA_AS No ESC_BA5251AA upec-120 SRR1314335;ILLUMINA;Paired;;SRX560352 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801932 SRS624648 27/8/15 26/10/14 ESC_BA5251AA Assembled 37.29 186535 5295487 Escherichia coli / Shigella;97.56% 178 7855 2.2 ESC_BA2267AA_AS 11845 11845 11845 11845 11845 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F95:B10 06_fastbaps 22_fastbaps B ESC_BA1451AA_AS No ESC_BA5284AA upec-106 SRR1314319;ILLUMINA;Paired;;SRX560336 Human 2011 UPEC Human Human patient with urinary tract infection; Homo sapiens 2011 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801916 SRS624632 27/8/15 26/10/14 ESC_BA5284AA Assembled 68.16 246237 5127194 Escherichia coli / Shigella;96.75% 148 2782 2.2 ESC_BA1451AA_AS 11816 11816 11816 11816 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 03_fastbaps 08_fastbaps E ESC_CA2243AA_AS No ESC_BA5333AA blood-11-0041 SRR1314296;ILLUMINA;Paired;;SRX560313 Human 2011 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2011 NA NA NA North America United States NA NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801893 SRS624608 27/8/15 26/10/14 ESC_BA5333AA Assembled 30.12 176237 5007332 Escherichia coli / Shigella;98.94% 93 8826 2.2 ESC_CA2243AA_AS 11787 11786 11786 11786 11786 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F98:B- 05_fastbaps 18_fastbaps A ESC_BA0967AA_AS No ESC_BA5335AA blood-11-0031 SRR1314295;ILLUMINA;Paired;;SRX560312 Human 2011 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2011 NA NA NA North America United States NA NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801892 SRS624616 27/8/15 26/10/14 ESC_BA5335AA Assembled 141.9 412067 5060279 Escherichia coli / Shigella;98.79% 86 2826 2.2 ESC_BA0967AA_AS 11786 11786 11786 11786 11786 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F98:B- 05_fastbaps 18_fastbaps A ESC_BA7761AA_AS No ESC_BA5369AA blood-10-0687 SRR1314278;ILLUMINA;Paired;;SRX560295 Human 2010 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2010 NA NA NA North America United States NA NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801875 SRS624591 27/8/15 26/10/14 ESC_BA5369AA Assembled 70.23 267959 5109614 Escherichia coli / Shigella;100.0% 79 2401 2.2 ESC_BA7761AA_AS 11755 11755 11755 11755 11755 11755 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_AA7971AA_AS No ESC_BA5371AA blood-10-0686 SRR1314277;ILLUMINA;Paired;;SRX560294 Human 2010 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2010 NA NA NA North America United States NA NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801874 SRS624590 27/8/15 26/10/14 ESC_BA5371AA Assembled 290.86 175567 5131083 Escherichia coli / Shigella;97.1% 385 4422 2.2 ESC_AA7971AA_AS 11755 11755 11755 11755 11755 11755 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B10 06_fastbaps 22_fastbaps B ESC_CA0894AA_AS No ESC_BA5419AA blood-09-0751 SRR1314253;ILLUMINA;Paired;;SRX560270 Human 2009 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2009 NA NA NA North America United States NA NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801850 SRS624566 27/8/15 26/10/14 ESC_BA5419AA Assembled 86.52 174187 5367883 Escherichia coli / Shigella;99.54% 221 5011 2.2 ESC_CA0894AA_AS 11721 11721 11721 11721 11721 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_CA6692AA_AS No ESC_BA5486AA blood-08-0654 SRR1314221;ILLUMINA;Paired;;SRX560238 Human 2008 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2008 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801818 SRS624534 27/8/15 26/10/14 ESC_BA5486AA Assembled 32.95 188399 5139393 Escherichia coli / Shigella;100.0% 93 7220 2.2 ESC_CA6692AA_AS 11673 11668 11668 11668 11668 11668 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_BA5185AA_AS No ESC_BA5490AA blood-08-0493 SRR1314219;ILLUMINA;Paired;;SRX560236 Human 2008 SEPEC Human Human blood from patient with bacteremia; Homo sapiens 2008 NA NA NA North America United States Washington NA NA NA NA NA UNIVERSITY OF WASHINGTON Escherichia coli NA NA NA NA NA NA NA PRJNA248737 SRP042632 NA SAMN02801816 SRS624532 27/8/15 26/10/14 ESC_BA5490AA Assembled 66.1 264142 5100296 Escherichia coli / Shigella;100.0% 104 2968 2.2 ESC_BA5185AA_AS 11668 11668 11668 11668 11668 11668 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B10 06_fastbaps 22_fastbaps B ESC_BA4108AA_AS No ESC_BA8159AA AZ-TG73627 SRR1269348;ILLUMINA;Paired;500;SRX532258 Poultry 2013 RMAE Poultry Avian Skinless Boneless Chicken Breast 2013 7 NA NA North America United States Alabama NA NA NA NA NA "FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION" Escherichia coli NA NA NA NA NA NA NA PRJNA230968 SRP038995 NA SAMN02628660 SRS601232 27/8/15 2/5/14 ESC_BA8159AA Assembled 48.74 352506 5139043 Escherichia coli / Shigella;98.59% 90 5113 2.2 ESC_BA4108AA_AS 9381 9381 9381 9381 9381 9381 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 10_fastbaps 41_fastbaps I ESC_CA5420AA_AS No ESC_BA8378AA BIDMC 65 "SRR1187790;ILLUMINA;Paired;180;SRX484939,SRR1180885;ILLUMINA;Paired;649;SRX479956,SRR1187718;ILLUMINA;Paired;180;SRX484939,SRR1180941;ILLUMINA;Paired;649;SRX479956" Human 2013 ExPEC Human Human Homo sapiens; ABSCESS 2013 NA NA NA North America United States Massachusetts Suffolk County Boston NA 42.3 -71 Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA234153 SRP039298 NA SAMN02581286 SRS565175 27/8/15 11/3/14 ESC_BA8378AA Assembled 115.65 563740 5059780 Escherichia coli / Shigella;100.0% 80 1370 2.2 ESC_CA5420AA_AS 9238 9238 9238 9238 9238 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_FA7190AA_AS No ESC_BA9051AA BIDMC 49a "SRR999495;ILLUMINA;Paired;180;SRX357467,SRR1010894;ILLUMINA;Paired;5000;SRX363717,SRR999494;ILLUMINA;Paired;180;SRX357467,SRR1010893;ILLUMINA;Paired;5000;SRX363717" Human 2012 SEPEC Human Human Homo sapiens; BLOOD CULTURE 2012 12 NA NA North America United States Massachusetts Suffolk County Boston NA 42.3 -71 Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA219256 SRP030172 NA SAMN02356588 SRS485441 27/8/15 9/10/13 ESC_BA9051AA Assembled 96.53 264350 5025267 Escherichia coli / Shigella;99.08% 114 1678 2.2 ESC_FA7190AA_AS 8712 8712 8712 8712 8712 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2/O50 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_CA0987AA_AS No ESC_BA9126AA UMEA 3893-1 "SRR958965;ILLUMINA;Paired;5000;SRX340684,SRR786381;ILLUMINA;Paired;180;SRX251588,SRR786382;ILLUMINA;Paired;180;SRX251588,SRR958966;ILLUMINA;Paired;5000;SRX340683" Human 1996 UPEC Human Human Homo sapiens; Urine 1996 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186377 SRP019738 NA SAMN01885986 SRS402393 27/8/15 28/8/13 ESC_BA9126AA Assembled 115.01 347101 5025551 Escherichia coli / Shigella;100.0% 142 1462 2.2 ESC_CA0987AA_AS 8673 8673 8673 8673 1592 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 01_fastbaps 01_fastbaps J ESC_CA1554AA_AS No ESC_BA9135AA UMEA 3702-1 "SRR958829;ILLUMINA;Paired;5000;SRX340665,SRR786364;ILLUMINA;Paired;180;SRX251570,SRR786363;ILLUMINA;Paired;180;SRX251570,SRR958828;ILLUMINA;Paired;5000;SRX340666" Human 1996 UPEC Human Human Homo sapiens; Urine 1996 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186368 SRP019729 NA SAMN01885977 SRS402382 27/8/15 28/8/13 ESC_BA9135AA Assembled 107.13 257329 4976864 Escherichia coli / Shigella;100.0% 140 4733 2.2 ESC_CA1554AA_AS 8664 8664 8664 8664 8664 8533 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_CA5933AA_AS No ESC_BA9141AA UMEA 3662-1 "SRR786352;ILLUMINA;Paired;180;SRX251557,SRR958796;ILLUMINA;Paired;5000;SRX340654,SRR958797;ILLUMINA;Paired;5000;SRX340653,SRR786351;ILLUMINA;Paired;180;SRX251557" Human 1996 UPEC Human Human Homo sapiens; Urine 1996 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186362 SRP019723 NA SAMN01885971 SRS402375 27/8/15 28/8/13 ESC_BA9141AA Assembled 137.37 203930 5041330 Escherichia coli / Shigella;100.0% 106 1058 2.2 ESC_CA5933AA_AS 8659 8659 8659 8659 8659 8659 8659 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_HA0689AA_AS No ESC_BA9164AA UMEA 3298-1 "SRR958733;ILLUMINA;Paired;5000;SRX340608,SRR786308;ILLUMINA;Paired;180;SRX251513,SRR958732;ILLUMINA;Paired;5000;SRX340607,SRR786309;ILLUMINA;Paired;180;SRX251513" Human 1995 UPEC Human Human Homo sapiens; Urine 1995 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186339 SRP019699 NA SAMN01885948 SRS402345 27/8/15 28/8/13 ESC_BA9164AA Assembled 96 129172 5168959 Escherichia coli / Shigella;97.79% 258 9240 3.41 ESC_HA0689AA_AS 22501 22501 22501 22501 22501 22501 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_CA5222AA_AS No ESC_BA9184AA UMEA 3206-1 "SRR786189;ILLUMINA;Paired;180;SRX251479,SRR958635;ILLUMINA;Paired;5000;SRX340567,SRR786190;ILLUMINA;Paired;180;SRX251479,SRR958636;ILLUMINA;Paired;5000;SRX340567" Human 1995 UPEC Human Human Homo sapiens; Urine 1995 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186318 SRP019680 NA SAMN01885928 SRS402322 27/8/15 28/8/13 ESC_BA9184AA Assembled 82.01 200439 5133651 Escherichia coli / Shigella;100.0% 124 1496 2.2 ESC_CA5222AA_AS 8620 8620 8620 8620 8620 8620 8620 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_CA4056AA_AS No ESC_BA9185AA UMEA 3203-1 "SRR786186;ILLUMINA;Paired;180;SRX251475,SRR958633;ILLUMINA;Paired;5000;SRX340561,SRR958634;ILLUMINA;Paired;5000;SRX340561,SRR786187;ILLUMINA;Paired;180;SRX251475" Human 1995 UPEC Human Human Homo sapiens; Urine 1995 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186317 SRP019678 NA SAMN01885927 SRS402319 27/8/15 28/8/13 ESC_BA9185AA Assembled 71.13 307677 5247156 Escherichia coli / Shigella;99.4% 183 2438 2.2 ESC_CA4056AA_AS 8617 8617 8617 8617 8617 8617 8617 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_FA1638AA_AS No ESC_BA9210AA UMEA 3140-1 "SRR958576;ILLUMINA;Paired;5000;SRX340535,SRR786007;ILLUMINA;Paired;180;SRX251429,SRR958577;ILLUMINA;Paired;5000;SRX340535,SRR786008;ILLUMINA;Paired;180;SRX251429" Human 1995 UPEC Human Human Homo sapiens; Urine 1995 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186292 SRP019654 NA SAMN01885902 SRS402287 27/8/15 28/8/13 ESC_BA9210AA Assembled 93.45 189545 5010312 Escherichia coli / Shigella;98.98% 216 6667 2.2 ESC_FA1638AA_AS 8589 8589 8589 8589 8589 8589 8589 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2/O50 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 10_fastbaps E ESC_CA2638AA_AS No ESC_BA9225AA UMEA 3041-1 "SRR785844;ILLUMINA;Paired;180;SRX251409,SRR958550;ILLUMINA;Paired;5000;SRX340506,SRR785842;ILLUMINA;Paired;180;SRX251409,SRR958551;ILLUMINA;Paired;5000;SRX340506" Human 1996 UPEC Human Human Homo sapiens; Urine 1996 NA NA NA Europe Sweden NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186278 SRP019639 NA SAMN01885888 SRS402270 27/8/15 28/8/13 ESC_BA9225AA Assembled 80.91 267670 5227828 Escherichia coli / Shigella;98.53% 236 2492 2.2 ESC_CA2638AA_AS 8578 8578 8578 8578 8578 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_CA2085AA_AS No ESC_BA9240AA KOEGE 32 (66a) "SRR958494;ILLUMINA;Paired;5000;SRX340485,SRR958493;ILLUMINA;Paired;5000;SRX340485,SRR785655;ILLUMINA;Paired;180;SRX251370,SRR785656;ILLUMINA;Paired;180;SRX251370" Human 2006 UPEC Human Human Homo sapiens; Urine 2006 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186259 SRP019621 NA SAMN01885869 SRS402247 27/8/15 28/8/13 ESC_BA9240AA Assembled 76.39 267753 5167084 Escherichia coli / Shigella;98.18% 184 4757 2.2 ESC_CA2085AA_AS 8564 8564 8564 8564 8564 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_CA5467AA_AS No ESC_BA9253AA HVH 217 (4-1022806) "SRR958446;ILLUMINA;Paired;5000;SRX340423,SRR784760;ILLUMINA;Paired;180;SRX251236,SRR784761;ILLUMINA;Paired;180;SRX251236,SRR958445;ILLUMINA;Paired;5000;SRX340423" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186245 SRP019540 NA SAMN01885856 SRS402153 27/8/15 28/8/13 ESC_BA9253AA Assembled 98.56 214649 5182473 Escherichia coli / Shigella;96.71% 174 1720 2.2 ESC_CA5467AA_AS 8551 8551 8551 8551 8551 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 01_fastbaps 01_fastbaps J ESC_CA5548AA_AS No ESC_BA9256AA HVH 222 (4-2977443) "SRR958454;ILLUMINA;Paired;5000;SRX340418,SRR784916;ILLUMINA;Paired;180;SRX251240,SRR958453;ILLUMINA;Paired;5000;SRX340418,SRR784915;ILLUMINA;Paired;180;SRX251240" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186249 SRP019543 NA SAMN01885860 SRS402156 27/8/15 28/8/13 ESC_BA9256AA Assembled 64.58 174859 5034854 Escherichia coli / Shigella;99.09% 237 8370 2.2 ESC_CA5548AA_AS 8548 8548 8548 8548 8548 8548 8548 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2/O50 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 10_fastbaps E ESC_CA6221AA_AS No ESC_BA9260AA HVH 214 (4-3062198) "SRR958440;ILLUMINA;Paired;5000;SRX340414,SRR958439;ILLUMINA;Paired;5000;SRX340414,SRR998573;ILLUMINA;Paired;180;SRX356833,SRR800746;ILLUMINA;Paired;180;SRX257722,SRR800745;ILLUMINA;Paired;180;SRX257722" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186241 SRP020359 NA SAMN01885853 SRS405931 27/8/15 28/8/13 ESC_BA9260AA Assembled 81.18 203926 5118048 Escherichia coli / Shigella;100.0% 183 3165 2.2 ESC_CA6221AA_AS 8546 8546 8546 8546 8546 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 01_fastbaps J ESC_CA3069AA_AS No ESC_BA9263AA HVH 211 (4-3041891) "SRR784704;ILLUMINA;Paired;180;SRX251221,SRR958434;ILLUMINA;Paired;5000;SRX340411,SRR958433;ILLUMINA;Paired;5000;SRX340411,SRR784705;ILLUMINA;Paired;180;SRX251221" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186238 SRP019533 NA SAMN01885850 SRS402144 27/8/15 28/8/13 ESC_BA9263AA Assembled 80.04 175936 5190929 Escherichia coli / Shigella;100.0% 215 5393 2.2 ESC_CA3069AA_AS 8542 8542 8542 8542 8446 6740 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_CA6132AA_AS No ESC_BA9264AA HVH 210 (4-3042480) "SRR958407;ILLUMINA;Paired;5000;SRX340410,SRR784681;ILLUMINA;Paired;180;SRX251220,SRR958406;ILLUMINA;Paired;5000;SRX340410,SRR770173;ILLUMINA;Paired;180;SRX247844" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186237 SRP019170 NA SAMN01885849 SRS399717 27/8/15 28/8/13 ESC_BA9264AA Assembled 50.06 175296 5130201 Escherichia coli / Shigella;100.0% 156 5623 2.2 ESC_CA6132AA_AS 8540 8540 8530 8530 8530 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2/O50 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_CA4203AA_AS No ESC_BA9273AA HVH 201 (4-4459431) "SRR770164;ILLUMINA;Paired;180;SRX247835,SRR958388;ILLUMINA;Paired;5000;SRX340388,SRR958387;ILLUMINA;Paired;5000;SRX340388,SRR784609;ILLUMINA;Paired;180;SRX251199" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186228 SRP019160 NA SAMN01885840 SRS399707 27/8/15 28/8/13 ESC_BA9273AA Assembled 55.19 182256 5145852 Escherichia coli / Shigella;99.47% 198 5348 2.2 ESC_CA4203AA_AS 8531 8531 8531 8531 8531 8531 3473 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_CA5088AA_AS No ESC_BA9275AA HVH 199 (4-5670322) "SRR958411;ILLUMINA;Paired;5000;SRX340386,SRR958412;ILLUMINA;Paired;5000;SRX340386,SRR770162;ILLUMINA;Paired;180;SRX247833,SRR784607;ILLUMINA;Paired;180;SRX251197" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186225 SRP019158 NA SAMN01885838 SRS399705 27/8/15 28/8/13 ESC_BA9275AA Assembled 51.47 225476 5126769 Escherichia coli / Shigella;100.0% 151 4218 2.2 ESC_CA5088AA_AS 8530 8530 8530 8530 8530 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2/O50 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_CA5710AA_AS No ESC_BA9276AA HVH 191 (3-9341900) "SRR784505;ILLUMINA;Paired;180;SRX251180,SRR958373;ILLUMINA;Paired;5000;SRX340385,SRR770154;ILLUMINA;Paired;180;SRX247824,SRR958372;ILLUMINA;Paired;5000;SRX340385" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186217 SRP019149 NA SAMN01885830 SRS399697 27/8/15 28/8/13 ESC_BA9276AA Assembled 75.5 347188 5307280 Escherichia coli / Shigella;99.45% 205 2492 2.2 ESC_CA5710AA_AS 8528 8528 8528 8528 1592 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 01_fastbaps J ESC_CA0677AA_AS No ESC_BA9286AA HVH 192 (4-3054470) "SRR958376;ILLUMINA;Paired;5000;SRX340375,SRR958375;ILLUMINA;Paired;5000;SRX340375,SRR770155;ILLUMINA;Paired;180;SRX247825,SRR784506;ILLUMINA;Paired;180;SRX251181" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186218 SRP019150 NA SAMN01885831 SRS399698 27/8/15 28/8/13 ESC_BA9286AA Assembled 73.61 186055 5131431 Escherichia coli / Shigella;100.0% 157 5053 2.2 ESC_CA0677AA_AS 8518 8518 8518 8518 8518 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_CA3698AA_AS No ESC_BA9294AA HVH 178 (4-3189163) "SRR958327;ILLUMINA;Paired;5000;SRX340367,SRR784426;ILLUMINA;Paired;180;SRX251164,SRR958328;ILLUMINA;Paired;5000;SRX340367,SRR770143;ILLUMINA;Paired;180;SRX247813" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186206 SRP019138 NA SAMN01885819 SRS399686 27/8/15 28/8/13 ESC_BA9294AA Assembled 75.19 174860 5058693 Escherichia coli / Shigella;99.39% 183 2460 2.2 ESC_CA3698AA_AS 8510 8510 8510 8510 8510 8510 7661 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:A6:B1 03_fastbaps 10_fastbaps E ESC_CA2708AA_AS No ESC_BA9319AA HVH 148 (4-3192490) "SRR958274;ILLUMINA;Paired;5000;SRX340337,SRR958275;ILLUMINA;Paired;5000;SRX340337,SRR770111;ILLUMINA;Paired;180;SRX247785,SRR784217;ILLUMINA;Paired;180;SRX251108" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186180 SRP019112 NA SAMN01885793 SRS399658 27/8/15 28/8/13 ESC_BA9319AA Assembled 70.22 203931 5092401 Escherichia coli / Shigella;97.67% 193 3944 2.2 ESC_CA2708AA_AS 8485 8485 8485 8485 8485 8485 8485 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F40:B- 03_fastbaps 10_fastbaps E ESC_CA2031AA_AS No ESC_BA9336AA HVH 127 (4-7303629) "SRR784078;ILLUMINA;Paired;180;SRX251073,SRR958241;ILLUMINA;Paired;5000;SRX340307,SRR770094;ILLUMINA;Paired;180;SRX247768,SRR958240;ILLUMINA;Paired;5000;SRX340307" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186147 SRP019095 NA SAMN01885774 SRS399641 27/8/15 28/8/13 ESC_BA9336AA Assembled 76.63 187437 5125943 Escherichia coli / Shigella;99.38% 180 2350 2.2 ESC_CA2031AA_AS 8469 8469 8469 8469 8469 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_CA3553AA_AS No ESC_BA9337AA HVH 126 (4-6034225) "SRR958239;ILLUMINA;Paired;5000;SRX340306,SRR958238;ILLUMINA;Paired;5000;SRX340306,SRR784077;ILLUMINA;Paired;180;SRX251072,SRR770093;ILLUMINA;Paired;180;SRX247767" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186146 SRP019092 NA SAMN01885773 SRS399639 27/8/15 28/8/13 ESC_BA9337AA Assembled 50.61 174347 5489188 Escherichia coli / Shigella;98.97% 310 9839 2.2 ESC_CA3553AA_AS 8468 8468 8468 8468 8468 44 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_CA3176AA_AS No ESC_BA9343AA HVH 118 (4-7345399) "SRR958220;ILLUMINA;Paired;5000;SRX340260,SRR958219;ILLUMINA;Paired;5000;SRX340260,SRR784025;ILLUMINA;Paired;180;SRX251061,SRR770087;ILLUMINA;Paired;180;SRX247760" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186140 SRP019087 NA SAMN01885767 SRS399633 27/8/15 28/8/13 ESC_BA9343AA Assembled 67.58 229488 5196008 Escherichia coli / Shigella;99.41% 183 3925 2.2 ESC_CA3176AA_AS 8464 8464 8464 8464 8464 8464 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_CA4887AA_AS No ESC_BA9360AA HVH 30 (4-2661829) "SRR784992;ILLUMINA;Paired;180;SRX251254,SRR800593;ILLUMINA;Paired;5000;SRX257585,SRR800532;ILLUMINA;Paired;5000;SRX257525,SRR784991;ILLUMINA;Paired;180;SRX251254" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186063 SRP019557 NA SAMN01885693 SRS402170 27/8/15 1/4/13 ESC_BA9360AA Assembled 66.74 192290 5116725 Escherichia coli / Shigella;100.0% 127 2908 2.2 ESC_CA4887AA_AS 8446 8446 8446 8446 8446 6740 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_CA4172AA_AS No ESC_BA9373AA HVH 12 (4-7653042) "SRR800578;ILLUMINA;Paired;5000;SRX257570,SRR784053;ILLUMINA;Paired;180;SRX251066,SRR784052;ILLUMINA;Paired;180;SRX251066,SRR800448;ILLUMINA;Paired;5000;SRX257445" Human 2005 SEPEC Human Human Homo sapiens; Blood 2005 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186047 SRP019525 NA SAMN01885677 SRS402117 27/8/15 1/4/13 ESC_BA9373AA Assembled 69.71 267697 5212578 Escherichia coli / Shigella;99.17% 137 2766 2.2 ESC_CA4172AA_AS 8435 8435 8435 8435 8435 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_CA5697AA_AS No ESC_BA9374AA HVH 76 (4-2538717) "SRR800474;ILLUMINA;Paired;5000;SRX257471,SRR800577;ILLUMINA;Paired;5000;SRX257569,SRR785413;ILLUMINA;Paired;180;SRX251327,SRR785412;ILLUMINA;Paired;180;SRX251327" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186099 SRP019595 NA SAMN01885726 SRS402216 27/8/15 1/4/13 ESC_BA9374AA Assembled 90.53 281332 5129825 Escherichia coli / Shigella;100.0% 151 3014 2.2 ESC_CA5697AA_AS 8432 8432 8432 8432 8432 6740 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_BA8137AA_AS No ESC_BA9384AA HVH 73 (4-2393174) "SRR785407;ILLUMINA;Paired;180;SRX251320,SRR800566;ILLUMINA;Paired;5000;SRX257559,SRR800478;ILLUMINA;Paired;5000;SRX257475,SRR785406;ILLUMINA;Paired;180;SRX251320" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186097 SRP019592 NA SAMN01885724 SRS402212 27/8/15 1/4/13 ESC_BA9384AA Assembled 104.69 192043 5286889 Escherichia coli / Shigella;100.0% 234 3895 2.2 ESC_BA8137AA_AS 8425 8425 8425 8425 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 08_fastbaps 35_fastbaps C ESC_CA3089AA_AS No ESC_BA9393AA HVH 104 (4-6977960) "SRR783946;ILLUMINA;Paired;180;SRX251044,SRR800494;ILLUMINA;Paired;5000;SRX257490,SRR800558;ILLUMINA;Paired;5000;SRX257550,SRR783947;ILLUMINA;Paired;180;SRX251044" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186125 SRP019516 NA SAMN01885752 SRS402107 27/8/15 1/4/13 ESC_BA9393AA Assembled 89.89 203935 5242278 Escherichia coli / Shigella;100.0% 195 3463 2.2 ESC_CA3089AA_AS 8414 8414 8414 8414 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 08_fastbaps 35_fastbaps C ESC_CA4774AA_AS No ESC_BA9403AA HVH 42 (4-2100061) "SRR785124;ILLUMINA;Paired;180;SRX251280,SRR800544;ILLUMINA;Paired;5000;SRX257536,SRR800427;ILLUMINA;Paired;5000;SRX257426,SRR785123;ILLUMINA;Paired;180;SRX251280" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186074 SRP019568 NA SAMN01885704 SRS402183 27/8/15 1/4/13 ESC_BA9403AA Assembled 79.74 267236 5255565 Escherichia coli / Shigella;100.0% 173 2236 2.2 ESC_CA4774AA_AS 8406 8406 8406 8406 8406 44 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 06_fastbaps 24_fastbaps B ESC_CA6287AA_AS No ESC_BA9410AA HVH 5 (4-7148410) "SRR800526;ILLUMINA;Paired;5000;SRX257521,SRR785277;ILLUMINA;Paired;180;SRX251303,SRR785278;ILLUMINA;Paired;180;SRX251303,SRR800531;ILLUMINA;Paired;5000;SRX257524" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186042 SRP019579 NA SAMN01885672 SRS402197 27/8/15 1/4/13 ESC_BA9410AA Assembled 80.97 237060 5021669 Escherichia coli / Shigella;100.0% 166 1945 2.2 ESC_CA6287AA_AS 8397 8397 8397 7613 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_CA1134AA_AS No ESC_BA9420AA HVH 35 (4-2962667) "SRR785052;ILLUMINA;Paired;180;SRX251262,SRR785050;ILLUMINA;Paired;180;SRX251262,SRR800510;ILLUMINA;Paired;5000;SRX257506,SRR800508;ILLUMINA;Paired;5000;SRX257504" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186067 SRP019562 NA SAMN01885697 SRS402176 27/8/15 1/4/13 ESC_BA9420AA Assembled 73.65 262736 5133139 Escherichia coli / Shigella;100.0% 112 4068 2.2 ESC_CA1134AA_AS 8389 8389 8389 8389 8389 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_CA5584AA_AS No ESC_BA9422AA HVH 59 (4-1119338) "SRR800419;ILLUMINA;Paired;5000;SRX257416,SRR785325;ILLUMINA;Paired;180;SRX251311,SRR785324;ILLUMINA;Paired;180;SRX251311,SRR800516;ILLUMINA;Paired;5000;SRX257501" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186090 SRP019584 NA SAMN01885717 SRS402203 27/8/15 1/4/13 ESC_BA9422AA Assembled 58.03 58156 5159897 Escherichia coli / Shigella;97.62% 361 12744 2.2 ESC_CA5584AA_AS 8383 8383 8383 8383 8383 8383 8383 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2/O50 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 03_fastbaps 10_fastbaps E ESC_CA5131AA_AS No ESC_BA9423AA HVH 48 (4-2658593) "SRR800505;ILLUMINA;Paired;5000;SRX257500,SRR785157;ILLUMINA;Paired;180;SRX251290,SRR800504;ILLUMINA;Paired;5000;SRX257494,SRR785158;ILLUMINA;Paired;180;SRX251290" Human 2003 SEPEC Human Human Homo sapiens; Blood 2003 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186082 SRP019574 NA SAMN01885709 SRS402190 27/8/15 1/4/13 ESC_BA9423AA Assembled 73.82 360253 5097537 Escherichia coli / Shigella;100.0% 107 1412 2.2 ESC_CA5131AA_AS 8387 8387 8387 8387 8387 8387 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B1 05_fastbaps 18_fastbaps A ESC_BA8039AA_AS No ESC_BA9424AA HVH 3 (4-7276001) "SRR785047;ILLUMINA;Paired;180;SRX251261,SRR800487;ILLUMINA;Paired;5000;SRX257483,SRR800501;ILLUMINA;Paired;5000;SRX257498,SRR785046;ILLUMINA;Paired;180;SRX251261" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186040 SRP019561 NA SAMN01885670 SRS402175 27/8/15 1/4/13 ESC_BA9424AA Assembled 89.73 114575 5280553 Escherichia coli / Shigella;98.59% 215 3279 2.2 ESC_BA8039AA_AS 8386 8386 8386 8386 8386 8386 8386 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_CA4416AA_AS No ESC_BA9428AA HVH 102 (4-6906788) "SRR783921;ILLUMINA;Paired;180;SRX251040,SRR800495;ILLUMINA;Paired;5000;SRX257491,SRR800452;ILLUMINA;Paired;5000;SRX257449,SRR783920;ILLUMINA;Paired;180;SRX251040" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186123 SRP019514 NA SAMN01885750 SRS402104 27/8/15 1/4/13 ESC_BA9428AA Assembled 76.67 203925 5023355 Escherichia coli / Shigella;100.0% 167 4963 2.2 ESC_CA4416AA_AS 8381 8381 8381 7613 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_CA2654AA_AS No ESC_BA9429AA HVH 1 (4-6876161) "SRR800493;ILLUMINA;Paired;5000;SRX257489,SRR784214;ILLUMINA;Paired;180;SRX251103,SRR784213;ILLUMINA;Paired;180;SRX251103,SRR800488;ILLUMINA;Paired;5000;SRX257484" Human 2004 SEPEC Human Human Homo sapiens; Blood 2004 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186038 SRP019527 NA SAMN01885668 SRS402124 27/8/15 1/4/13 ESC_BA9429AA Assembled 79.23 285514 5102615 Escherichia coli / Shigella;99.35% 155 4241 2.2 ESC_CA2654AA_AS 8380 8380 8380 8380 8380 8380 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 17_fastbaps A ESC_CA4893AA_AS No ESC_BA9436AA HVH 19 (4-7154984) "SRR800451;ILLUMINA;Paired;5000;SRX257448,SRR784598;ILLUMINA;Paired;180;SRX251188,SRR784597;ILLUMINA;Paired;180;SRX251188,SRR800421;ILLUMINA;Paired;5000;SRX257418" Human 2005 SEPEC Human Human Homo sapiens; Blood 2005 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA186052 SRP019531 NA SAMN01885682 SRS402138 27/8/15 1/4/13 ESC_BA9436AA Assembled 74.3 186576 5374515 Escherichia coli / Shigella;99.21% 277 3738 2.2 ESC_CA4893AA_AS 8375 8375 8375 8375 8375 8375 8375 8375 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH27 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F34:B1 05_fastbaps 19_fastbaps A ESC_BA8085AA_AS No ESC_CA1373AA KTE123 "SRR641870;ILLUMINA;Paired;441;SRX172446,SRR641850;ILLUMINA;Paired;441;SRX172446,SRR639942;ILLUMINA;Paired;157;SRX154793,SRR639993;ILLUMINA;Paired;157;SRX154793" Human 2010 NA Human Human Homo sapiens; female 2010 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA164967 SRP020856 NA SAMN00854664 SRS410483 27/8/15 28/12/12 ESC_CA1373AA Assembled 95.31 563794 5141943 Escherichia coli / Shigella;97.67% 91 2196 2.2 ESC_BA8085AA_AS 6740 6740 6740 6740 6740 6740 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_BA8258AA_AS No ESC_CA1387AA KTE118 "SRR641915;ILLUMINA;Paired;539;SRX172432,SRR639997;ILLUMINA;Paired;164;SRX149800,SRR640057;ILLUMINA;Paired;164;SRX149800,SRR641822;ILLUMINA;Paired;539;SRX172432" Human 2010 NA Human Human Homo sapiens; female 2010 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA164961 SRP018534 NA SAMN00854661 SRS410435 27/8/15 28/12/12 ESC_CA1387AA Assembled 53.95 160697 5153446 Escherichia coli / Shigella;100.0% 162 7061 2.2 ESC_BA8258AA_AS 6727 6727 6727 6727 6727 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_CA6295AA_AS No ESC_CA1445AA KTE55 "SRR641907;ILLUMINA;Paired;528;SRX172368,SRR640056;ILLUMINA;Paired;178;SRX149849,SRR642266;ILLUMINA;Paired;528;SRX172368,SRR640090;ILLUMINA;Paired;178;SRX149849" Human 2010 NA Human Human Homo sapiens; female 2010 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA164867 SRP020755 NA SAMN00854614 SRS410373 27/8/15 28/12/12 ESC_CA1445AA Assembled 66.29 267671 5160993 Escherichia coli / Shigella;100.0% 98 2043 2.2 ESC_CA6295AA_AS 19366 6672 6672 6672 6672 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_CA2823AA_AS No ESC_CA1450AA KTE62 "SRR639940;ILLUMINA;Paired;171;SRX149827,SRR641898;ILLUMINA;Paired;589;SRX172363,SRR641862;ILLUMINA;Paired;589;SRX172363,SRR640023;ILLUMINA;Paired;171;SRX149827" Human 2010 NA Human Human Homo sapiens; female 2010 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA164881 SRP020837 NA SAMN00854621 SRS410463 27/8/15 28/12/12 ESC_CA1450AA Assembled 81.19 269951 4970729 Escherichia coli / Shigella;99.33% 167 2099 2.2 ESC_CA2823AA_AS 6666 6666 6666 6666 4076 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B1 02_fastbaps 05_fastbaps D ESC_CA6245AA_AS No ESC_CA1451AA KTE65 "SRR640092;ILLUMINA;Paired;161;SRX149796,SRR640132;ILLUMINA;Paired;161;SRX149796,SRR642285;ILLUMINA;Paired;536;SRX172362,SRR641923;ILLUMINA;Paired;536;SRX172362" Human 2010 NA Human Human Homo sapiens; female 2010 NA NA NA Europe Denmark NA NA NA NA NA NA Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA164887 SRP020850 NA SAMN00854624 SRS410477 27/8/15 28/12/12 ESC_CA1451AA Assembled 54.69 185943 5137684 Escherichia coli / Shigella;100.0% 161 7382 2.2 ESC_CA6245AA_AS 6667 6667 6667 6667 6667 6667 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_FA6906AA_AS No ESC_CA3883AA AZ_TG78672 SRR2890045;ILLUMINA;Paired;500;SRX1409683 Environment 2015 Environmental Environment Water/River ND 2015 NA NA NA North America United States Arizona NA NA NA NA NA CFSAN Escherichia coli NA NA NA NA NA NA NA PRJNA230968 SRP038995 NA SAMN04125216 SRS1144604 4/11/15 1/1/15 ESC_CA3883AA Assembled 81.53 268775 5184421 Escherichia coli / Shigella;97.87% 92 4950 2.2 ESC_FA6906AA_AS 4924 4924 4924 4924 4924 4924 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_FA6908AA_AS No ESC_CA3885AA AZ_TG78664 SRR2890043;ILLUMINA;Paired;500;SRX1409681 Environment 2015 Environmental Environment Water/River ND 2015 NA NA NA North America United States Arizona NA NA NA NA NA CFSAN Escherichia coli NA NA NA NA NA NA NA PRJNA230968 SRP038995 NA SAMN04125214 SRS1144605 4/11/15 1/1/15 ESC_CA3885AA Assembled 89.04 359701 5278766 Escherichia coli / Shigella;100.0% 53 3911 2.2 ESC_FA6908AA_AS 4921 4921 4921 4921 4921 4921 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_FA8050AA_AS No ESC_CA4621AA FSIS 210133188 SRR2970158;ILLUMINA;Paired;;SRX1459385 Bovine 2014 Faecal Livestock NA Animal-Cattle-Heifer 2014 3 NA NA North America United States Pennsylvania NA NA NA NA NA FDA Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN04293302 SRS1186952 12/12/15 3/12/15 ESC_CA4621AA Assembled 113 217358 5208880 Escherichia coli / Shigella;97.47% 101 3648 3.32 ESC_FA8050AA_AS 4490 4490 4490 4490 4490 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F16:B- 04_fastbaps 14_fastbaps F ESC_GA5351AA_AS No ESC_CA9633AA H552 traces-0jtzwZu;ILLUMINA;Paired;;NA Human 2001 Faecal Human Human Faecal 2001 NA NA NA Oceania Australia Australian Capital Territory NA Canberra NA NA NA David Gordon Escherichia coli NA NA NA Non Pathogen NA NA NA NA NA NA NA NA 5/4/16 4/10/16 ESC_CA9633AA Assembled 41 115711 5055124 Escherichia coli / Shigella;100.0% 116 8709 3.41 ESC_GA5351AA_AS 1105 1105 1105 1105 1105 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_GA8857AA_AS No ESC_DA2142AA 236201 SRR3574295;ILLUMINA;Paired;;SRX1793542 Human 2016 NA Human Human Human; Homo sapiens 2016 3 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA O1:H7 NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05163772 SRS1462916 24/5/16 24/5/16 ESC_DA2142AA Assembled 42 186024 5058432 Escherichia coli / Shigella;100.0% 143 3920 3.41 ESC_GA8857AA_AS 21374 21374 21374 21374 21374 3473 3473 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_GA8819AA_AS No ESC_DA2180AA 217022 SRR3574257;ILLUMINA;Paired;;SRX1793500 Human 2016 NA Human Human Human; Homo sapiens 2016 2 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA O1:K1:H1 NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05163734 SRS1462878 24/5/16 24/5/16 ESC_DA2180AA Assembled 54 271800 5154942 Escherichia coli / Shigella;100.0% 143 2955 3.41 ESC_GA8819AA_AS 21335 21335 21335 21335 21335 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_GA9272AA_AS No ESC_DA2521AA 195743 SRR3578906;ILLUMINA;Paired;;SRX1795887 Human 2015 NA Human Human Human; Homo sapiens 2015 12 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05170870 SRS1464155 26/5/16 25/5/16 ESC_DA2521AA Assembled 71 240363 5068878 Escherichia coli / Shigella;95.44% 103 1881 3.41 ESC_GA9272AA_AS 21729 21729 21729 21729 21729 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 03_fastbaps 08_fastbaps E ESC_GA9224AA_AS No ESC_DA2569AA 129397 SRR3578663;ILLUMINA;Paired;;SRX1795640 Human 2015 NA Human Human Human; Homo sapiens 2015 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05170821 SRS1464008 26/5/16 25/5/16 ESC_DA2569AA Assembled 26 82881 5138232 Escherichia coli / Shigella;100.0% 216 15505 3.41 ESC_GA9224AA_AS 21665 21665 21665 21665 21665 21665 21665 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B- 06_fastbaps 24_fastbaps B ESC_HA0198AA_AS No ESC_DA3182AA PNUSAE002928 SRR3657573;ILLUMINA;Paired;;SRX1837252 Human 2015 NA Human Human Homo sapiens 2015 9 NA NA North America United States NA NA NA NA NA NA Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch Escherichia coli NA NA NA NA NA NA NA PRJNA218110 SRP046387 NA SAMN05033858 SRS1496660 11/6/16 10/6/16 ESC_DA3182AA Assembled 121 342527 5234431 Escherichia coli / Shigella;100.0% 72 3587 3.41 ESC_HA0198AA_AS 22235 22235 22235 22235 22235 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 17_fastbaps A ESC_HA0238AA_AS No ESC_DA3285AA PNUSAE002709 SRR3676340;ILLUMINA;Paired;;SRX1851550 Human 2015 NA Human Human Homo sapiens 2015 6 NA NA North America United States NA NA NA NA NA NA Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch Escherichia coli NA NA NA NA NA NA NA PRJNA218110 SRP046387 NA SAMN04633639 SRS1508944 17/6/16 16/6/16 ESC_DA3285AA Assembled 49 137482 5429111 Escherichia coli / Shigella;93.13% 184 13075 3.41 ESC_HA0238AA_AS 22267 22267 22267 22267 22267 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA0246AA_AS No ESC_DA3301AA DMG2016 traces-0hyvFTe;ILLUMINA;Paired;;NA Human 2016 Faecal Human Human Faeces 2016 4 15 NA Oceania Australia NA NA NA NA -2.672634741 5.888028145 David Gordon Escherichia coli NA NA NA Non Pathogen NA NA NA NA NA NA NA NA 20/6/16 23/12/16 ESC_DA3301AA Assembled 47 114723 5196351 Escherichia coli / Shigella;91.8% 161 17708 3.41 ESC_HA0246AA_AS 22283 22283 22283 22283 22283 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_HA0364AA_AS No ESC_DA3384AA 50857972 traces-0wMtqSe;ILLUMINA;Paired;;NA Human 2014 SEPEC Human Human Blood 2014 NA NA NA Europe Norway NA NA NA NA NA NA Norwegian National Advisory Unit on Detection of Antimicrobial Resistance Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 24/6/16 27/12/16 ESC_DA3384AA Assembled 35 178682 5274933 Escherichia coli / Shigella;87.5% 109 3952 3.41 ESC_HA0364AA_AS 22335 22335 22335 22335 22335 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/norway.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 08_fastbaps 35_fastbaps C ESC_HA5800AA_AS No ESC_DA4606AA F11 SRR3143606;ILLUMINA;Paired;;SRX1559731 Human 2011 ExPEC Human Human Human sputum 2011 NA NA NA Asia China NA NA NA NA NA NA Swansea University Escherichia coli NA NA NA NA NA NA NA PRJNA295914 SRP068897 NA SAMN04273109 SRS1274396 1/7/16 28/1/16 ESC_DA4606AA Assembled 60 203930 5199166 Escherichia coli / Shigella;98.65% 120 3708 3.41 ESC_HA5800AA_AS 25968 25968 25968 25968 25968 25968 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/china.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 C4:B1 10_fastbaps 43_fastbaps I ESC_HA5683AA_AS No ESC_DA4750AA GN04262 SRR3098955;ILLUMINA;Paired;;SRX1528901 Human 2011 NA Human Human Homo sapiens 2011 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN04388572 SRS1246514 1/7/16 17/1/16 ESC_DA4750AA Assembled 427 110808 5229282 Escherichia coli / Shigella;92.54% 239 12110 3.41 ESC_HA5683AA_AS 25879 25879 25879 25879 25879 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_HA5665AA_AS No ESC_DA4768AA GN03409 SRR3098917;ILLUMINA;Paired;;SRX1528867 Human 2010 NA Human Human Homo sapiens 2010 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN04388554 SRS1246480 1/7/16 17/1/16 ESC_DA4768AA Assembled 395 144337 5275936 Escherichia coli / Shigella;95.27% 318 13602 3.41 ESC_HA5665AA_AS 26097 26097 26097 26097 26097 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5663AA_AS No ESC_DA4770AA GN03324 SRR3098912;ILLUMINA;Paired;;SRX1528862 Human 2010 NA Human Human Homo sapiens 2010 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN04388552 SRS1246476 1/7/16 17/1/16 ESC_DA4770AA Assembled 259 124843 5139153 Escherichia coli / Shigella;100.0% 170 11341 3.41 ESC_HA5663AA_AS 26088 26088 26088 26088 26088 26088 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_HA5615AA_AS No ESC_DA4818AA GN02476 SRR3098837;ILLUMINA;Paired;;SRX1528789 Human 2006 ExPEC Human Human Homo sapiens; Bodily fluid 2006 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922985 SRS1246402 1/7/16 17/1/16 ESC_DA4818AA Assembled 246 134431 5214436 Escherichia coli / Shigella;100.0% 250 14017 3.41 ESC_HA5615AA_AS 25864 25864 25864 25864 25864 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 01_fastbaps J ESC_HA5591AA_AS No ESC_DA4842AA GN02345 SRR3098811;ILLUMINA;Paired;;SRX1528764 Human 2005 ExPEC Human Human Homo sapiens; Bodily fluid 2005 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922956 SRS1246376 1/7/16 17/1/16 ESC_DA4842AA Assembled 126 35637 5215703 Escherichia coli / Shigella;100.0% 325 25082 3.41 ESC_HA5591AA_AS 25852 25852 25852 25852 25852 25852 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 17_fastbaps A ESC_HA5580AA_AS No ESC_DA4853AA GN02260 SRR3098800;ILLUMINA;Paired;;SRX1528753 Human 2004 ExPEC Human Human Homo sapiens; Bodily fluid 2004 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922932 SRS1246367 1/7/16 17/1/16 ESC_DA4853AA Assembled 119 263963 5223730 Escherichia coli / Shigella;93.57% 106 6371 3.41 ESC_HA5580AA_AS 25843 25835 25830 25830 25830 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5579AA_AS No ESC_DA4854AA GN02254 SRR3098799;ILLUMINA;Paired;;SRX1528752 Human 2003 ExPEC Human Human Homo sapiens; Bodily fluid 2003 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922931 SRS1246365 1/7/16 17/1/16 ESC_DA4854AA Assembled 264 229729 5211277 Escherichia coli / Shigella;93.32% 140 4912 3.41 ESC_HA5579AA_AS 25842 25842 25830 25830 25830 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5572AA_AS No ESC_DA4861AA GN02172 SRR3098783;ILLUMINA;Paired;;SRX1528736 Human 2003 ExPEC Human Human Homo sapiens; Bodily fluid 2003 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922923 SRS1246358 1/7/16 17/1/16 ESC_DA4861AA Assembled 229 168662 5243449 Escherichia coli / Shigella;94.02% 166 7614 3.41 ESC_HA5572AA_AS 25837 25837 25830 25830 25830 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5570AA_AS No ESC_DA4863AA GN02165 SRR3098778;ILLUMINA;Paired;;SRX1528734 Human 2003 ExPEC Human Human Homo sapiens; Bodily fluid 2003 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922921 SRS1246347 1/7/16 17/1/16 ESC_DA4863AA Assembled 121 243579 5380672 Escherichia coli / Shigella;97.56% 182 6528 3.41 ESC_HA5570AA_AS 25848 25848 25848 25848 25848 9830 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:A5:B1 9 06_fastbaps 23_fastbaps B ESC_HA5568AA_AS No ESC_DA4865AA GN02148 SRR3098774;ILLUMINA;Paired;;SRX1528730 Human 2003 ExPEC Human Human Homo sapiens; Bodily fluid 2003 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922919 SRS1246343 1/7/16 17/1/16 ESC_DA4865AA Assembled 260 227590 5233531 Escherichia coli / Shigella;94.86% 156 5806 3.41 ESC_HA5568AA_AS 25835 25835 25830 25830 25830 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5565AA_AS No ESC_DA4868AA GN02099 SRR3098770;ILLUMINA;Paired;;SRX1528725 Human 2002 ExPEC Human Human Homo sapiens; Bodily fluid 2002 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922916 SRS1246339 1/7/16 17/1/16 ESC_DA4868AA Assembled 228 125531 5210966 Escherichia coli / Shigella;91.5% 265 11059 3.41 ESC_HA5565AA_AS 25833 25833 25833 25833 25833 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5557AA_AS No ESC_DA4876AA GN02005 SRR3098758;ILLUMINA;Paired;;SRX1528714 Human 2002 ExPEC Human Human Homo sapiens; Bodily fluid 2002 NA NA NA North America United States NA NA NA NA 36 -78.9 JCVI Escherichia coli NA NA NA NA NA NA NA PRJNA290784 SRP068372 NA SAMN03922906 SRS1246327 1/7/16 17/1/16 ESC_DA4876AA Assembled 224 195354 5222439 Escherichia coli / Shigella;88.17% 165 6245 3.41 ESC_HA5557AA_AS 25830 25830 25830 25830 25830 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_HA5174AA_AS No ESC_DA5259AA HICF83 SRR3051039;ILLUMINA;Paired;;SRX1499601 Human 2009 SEPEC Human Human Homo sapiens; Blood 2009 7 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357690 SRS1221208 1/7/16 5/1/16 ESC_DA5259AA Assembled 75 359489 5227881 Escherichia coli / Shigella;96.77% 64 1881 3.41 ESC_HA5174AA_AS 25485 25485 25485 25485 25485 25485 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH1439 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 0 F2:B1 05_fastbaps 18_fastbaps A ESC_HA5153AA_AS No ESC_DA5280AA HICF14 SRR3051018;ILLUMINA;Paired;;SRX1499580 Human 2008 SEPEC Human Human Homo sapiens; Blood 2008 10 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357669 SRS1221229 1/7/16 5/1/16 ESC_DA5280AA Assembled 83 295699 5220511 Escherichia coli / Shigella;100.0% 77 1711 3.41 ESC_HA5153AA_AS 25466 25466 25466 25466 25466 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 01_fastbaps 01_fastbaps J ESC_HA5149AA_AS No ESC_DA5284AA HICF257 SRR3051014;ILLUMINA;Paired;;SRX1499576 Human 2011 SEPEC Human Human Homo sapiens; Blood 2011 8 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357665 SRS1221233 1/7/16 5/1/16 ESC_DA5284AA Assembled 135 269151 5186066 Escherichia coli / Shigella;100.0% 98 1840 3.41 ESC_HA5149AA_AS 25461 25461 25461 25461 4076 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_HA5136AA_AS No ESC_DA5297AA HICF241 SRR3051001;ILLUMINA;Paired;;SRX1499563 Human 2011 SEPEC Human Human Homo sapiens; Blood 2011 5 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357652 SRS1221246 1/7/16 5/1/16 ESC_DA5297AA Assembled 54 322760 4944174 Escherichia coli / Shigella;97.14% 43 2101 3.41 ESC_HA5136AA_AS 25798 25798 25798 25798 25798 25798 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 24_fastbaps B ESC_HA5121AA_AS No ESC_DA5312AA HICF219 SRR3050986;ILLUMINA;Paired;;SRX1499548 Human 2011 SEPEC Human Human Homo sapiens; Blood 2011 3 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357637 SRS1221261 1/7/16 5/1/16 ESC_DA5312AA Assembled 89 213257 5289608 Escherichia coli / Shigella;95.31% 75 2081 3.41 ESC_HA5121AA_AS 25434 25434 25434 25434 25434 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 01_fastbaps 01_fastbaps J ESC_HA5117AA_AS No ESC_DA5316AA HICF212 SRR3050982;ILLUMINA;Paired;;SRX1499544 Human 2011 SEPEC Human Human Homo sapiens; Blood 2011 3 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357633 SRS1221265 1/7/16 5/1/16 ESC_DA5316AA Assembled 117 360546 5080065 Escherichia coli / Shigella;100.0% 57 1526 3.41 ESC_HA5117AA_AS 25432 25432 25432 25432 25432 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_HA5111AA_AS No ESC_DA5322AA HICF205 SRR3050976;ILLUMINA;Paired;;SRX1499538 Human 2011 SEPEC Human Human Homo sapiens; Blood 2011 1 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357627 SRS1221271 1/7/16 5/1/16 ESC_DA5322AA Assembled 101 244953 5244928 Escherichia coli / Shigella;96.92% 98 1961 3.41 ESC_HA5111AA_AS 25425 25425 25425 7779 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_HA5098AA_AS No ESC_DA5335AA HICF190 SRR3050963;ILLUMINA;Paired;;SRX1499525 Human 2010 SEPEC Human Human Homo sapiens; Blood 2010 11 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357614 SRS1221285 1/7/16 5/1/16 ESC_DA5335AA Assembled 93 360313 5199735 Escherichia coli / Shigella;97.14% 60 1961 3.41 ESC_HA5098AA_AS 25413 25413 25413 25413 25413 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_HA5094AA_AS No ESC_DA5339AA HICF180 SRR3050959;ILLUMINA;Paired;;SRX1499521 Human 2010 SEPEC Human Human Homo sapiens; Blood 2010 10 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357610 SRS1221288 1/7/16 5/1/16 ESC_DA5339AA Assembled 88 286624 5214918 Escherichia coli / Shigella;100.0% 70 1904 3.41 ESC_HA5094AA_AS 25408 25408 25408 25408 25408 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_HA5076AA_AS No ESC_DA5356AA HICF154 SRR3050942;ILLUMINA;Paired;;SRX1499504 Human 2010 SEPEC Human Human Homo sapiens; Blood 2010 7 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357593 SRS1221305 1/7/16 5/1/16 ESC_DA5356AA Assembled 72 204009 5054791 Escherichia coli / Shigella;97.16% 101 2377 3.41 ESC_HA5076AA_AS 25393 25393 25393 25393 25393 9859 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 09_fastbaps E ESC_HA5043AA_AS No ESC_DA5389AA HICF110 SRR3050909;ILLUMINA;Paired;;SRX1499471 Human 2010 SEPEC Human Human Homo sapiens; Blood 2010 1 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357560 SRS1221338 1/7/16 5/1/16 ESC_DA5389AA Assembled 108 360506 5105885 Escherichia coli / Shigella;100.0% 66 1435 3.41 ESC_HA5043AA_AS 25361 25361 25361 25361 25361 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_HA5037AA_AS No ESC_DA5395AA HICF89 SRR3050903;ILLUMINA;Paired;;SRX1499465 Human 2009 SEPEC Human Human Homo sapiens; Blood 2009 10 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357554 SRS1221344 1/7/16 5/1/16 ESC_DA5395AA Assembled 83 200992 5177328 Escherichia coli / Shigella;96.2% 117 1991 3.41 ESC_HA5037AA_AS 25354 25354 25354 25354 25354 9859 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 1 0 1 0 0 1 F16:B16 03_fastbaps 09_fastbaps E ESC_HA5031AA_AS No ESC_DA5401AA HICF76 SRR3050897;ILLUMINA;Paired;;SRX1499459 Human 2009 SEPEC Human Human Homo sapiens; Blood 2009 8 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357548 SRS1221350 1/7/16 5/1/16 ESC_DA5401AA Assembled 80 360233 5191751 Escherichia coli / Shigella;100.0% 56 1921 3.41 ESC_HA5031AA_AS 25348 25348 25348 25348 25348 25348 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_HA5023AA_AS No ESC_DA5409AA HICF62 SRR3050889;ILLUMINA;Paired;;SRX1499451 Human 2009 SEPEC Human Human Homo sapiens; Blood 2009 6 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357540 SRS1221358 1/7/16 5/1/16 ESC_DA5409AA Assembled 66 360324 5330688 Escherichia coli / Shigella;100.0% 63 2345 3.41 ESC_HA5023AA_AS 25340 25340 25340 25340 25340 25340 6620 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH27 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 07_fastbaps 29_fastbaps H ESC_HA5006AA_AS No ESC_DA5426AA HICF42 SRR3050872;ILLUMINA;Paired;;SRX1499434 Human 2009 SEPEC Human Human Homo sapiens; Blood 2009 3 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357523 SRS1221374 1/7/16 5/1/16 ESC_DA5426AA Assembled 57 389918 5228278 Escherichia coli / Shigella;97.43% 58 2338 3.41 ESC_HA5006AA_AS 25324 25324 25324 25324 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_HA4979AA_AS No ESC_DA5453AA HICF1 SRR3050845;ILLUMINA;Paired;;SRX1499407 Human 2008 SEPEC Human Human Homo sapiens; Blood 2008 9 NA NA Europe United Kingdom England Oxfordshire Oxford NA 51.75 -1.26 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA306133 SRP067738 NA SAMN04357496 SRS1221399 1/7/16 5/1/16 ESC_DA5453AA Assembled 64 515527 5314276 Escherichia coli / Shigella;100.0% 70 2579 3.41 ESC_HA4979AA_AS 25297 25297 25297 25297 25297 25297 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 06_fastbaps 23_fastbaps B ESC_HA2055AA_AS No ESC_DA9304AA WU43 SRR1610071;ILLUMINA;Paired;;SRX730694 Human 2010 NA Human Human de-identified patient sample 2010 1 NA NA North America United States Missouri NA Saint Louis NA 38.6 -90.2 Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA261540 SRP048823 NA SAMN03074793 SRS719888 1/7/16 10/10/15 ESC_DA9304AA Assembled 74 113203 5006171 Escherichia coli / Shigella;98.23% 161 9691 3.41 ESC_HA2055AA_AS 23504 23504 23504 23504 23504 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH220 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_HA1968AA_AS No ESC_DA9458AA C525 SRR1508898;ILLUMINA;Paired;;SRX647861 Human 2010 ExPEC Human Human Homo sapiens; Blood or urine 2010 11 NA NA Asia Nepal NA NA NA NA 27.4 85.19 University of Oxford Escherichia coli NA NA NA NA NA NA NA PRJNA253300 SRP043586 NA SAMN02885312 SRS655129 1/7/16 8/10/14 ESC_DA9458AA Assembled 68 185531 5212492 Escherichia coli / Shigella;96.22% 128 1988 3.41 ESC_HA1968AA_AS 23430 23430 23430 23430 10861 9859 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/nepal.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 1 0 1 0 0 1 F24:B1 03_fastbaps 09_fastbaps E ESC_HA7812AA_AS No ESC_EA1687AA MOD1-EC6794 SRR3957107;ILLUMINA;Paired;300;SRX1981167 Bovine 1995 Faecal Livestock NA "bovine, cow-Intestine-Small" 1995 1 NA NA North America United States Pennsylvania NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04992142 SRS1588611 28/7/16 1/1/15 ESC_EA1687AA Assembled 85 183619 5178132 Escherichia coli / Shigella;97.33% 116 3664 3.51 ESC_HA7812AA_AS 27980 27980 27980 27980 27980 27980 27980 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_HA7931AA_AS No ESC_EA2192AA MOD1-EC6853 SRR3972152;ILLUMINA;Paired;300;SRX1984101 Environment 1996 Faecal Wild Animal Primate primate-Intestine 1996 7 NA NA North America United States Florida NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O18 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04992219 SRS1589777 29/7/16 1/1/15 ESC_EA2192AA Assembled 137 159586 5243209 Escherichia coli / Shigella;100.0% 114 3263 3.51 ESC_HA7931AA_AS 28066 28066 28066 28066 28066 28066 28066 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 06_fastbaps 21_fastbaps B ESC_HA7918AA_AS No ESC_EA2205AA MOD1-EC6834 SRR3972133;ILLUMINA;Paired;300;SRX1984050 Bovine 1996 Faecal Livestock Bovine "bovine, cow-Feces" 1996 6 NA NA North America United States Michigan NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04992200 SRS1589753 29/7/16 1/1/15 ESC_EA2205AA Assembled 97 145965 5142440 Escherichia coli / Shigella;95.44% 92 4484 3.51 ESC_HA7918AA_AS 28050 28050 28050 28050 28050 28050 28050 28050 1108 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 15_fastbaps F ESC_HA8279AA_AS No ESC_EA2279AA MOD1-EC6705 SRR3987656;ILLUMINA;Paired;300;SRX1988987 Human 1993 UPEC Human Human Homo sapiens; homo sapiens-Urine 1993 1 NA NA North America United States Texas NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04992535 SRS1592741 30/7/16 1/1/15 ESC_EA2279AA Assembled 165 216756 5131717 Escherichia coli / Shigella;97.95% 118 2071 3.51 ESC_HA8279AA_AS 28346 28346 28346 28346 28346 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_HA8271AA_AS No ESC_EA2287AA MOD1-EC6695 SRR3987646;ILLUMINA;Paired;300;SRX1988978 Human 1992 SEPEC Human Human Homo sapiens; homo sapiens-Blood 1992 10 NA NA North America United States Massachusetts NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04992525 SRS1592732 30/7/16 1/1/15 ESC_EA2287AA Assembled 108 151552 5003313 Escherichia coli / Shigella;100.0% 94 4895 3.51 ESC_HA8271AA_AS 28338 28338 28338 28338 28338 28338 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 18_fastbaps A ESC_HA8230AA_AS No ESC_EA2328AA MOD1-EC6651 SRR3987588;ILLUMINA;Paired;300;SRX1988916 Human 1991 Faecal Human Human Homo sapiens; homo sapiens-Feces 1991 2 NA NA Asia Saudi Arabia NA NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04992481 SRS1592671 30/7/16 1/1/15 ESC_EA2328AA Assembled 60 108869 5209181 Escherichia coli / Shigella;96.29% 140 8072 3.51 ESC_HA8230AA_AS 28304 28304 28304 28304 28304 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/saudi-arabia.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F95:B10 8* 05_fastbaps 17_fastbaps A ESC_HA8540AA_AS No ESC_EA2531AA MOD1-EC6049 SRR3988044;ILLUMINA;Paired;300;SRX1989451 Human 2010 Faecal Human Human feces 2010 6 NA NA North America Norway NA NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05439463 SRS1593188 29/7/16 1/1/15 ESC_EA2531AA Assembled 95 174142 5107937 Escherichia coli / Shigella;100.0% 110 2987 3.51 ESC_HA8540AA_AS 27542 27542 27542 27542 27542 27542 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/norway.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_HA8369AA_AS No ESC_EA2702AA MOD1-EC5969 SRR3987725;ILLUMINA;Paired;300;SRX1989148 Bovine 2009 ExPEC Livestock Bovine spleen 2009 6 NA NA North America United States Pennsylvania NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2:H4 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05439394 SRS1592895 29/7/16 1/1/15 ESC_EA2702AA Assembled 81 184576 5501297 Escherichia coli / Shigella;96.05% 149 2405 3.51 ESC_HA8369AA_AS 27328 27328 27328 27328 27328 27328 27328 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 2 02_fastbaps 04_fastbaps D ESC_HA9073AA_AS No ESC_EA3031AA MOD1-EC5860 SRR3993864;ILLUMINA;Paired;300;SRX1994916 Canine 1984 UPEC Companion Animal NA urine 1984 11 NA NA North America United States Florida NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05468050 SRS1597489 2/8/16 1/1/15 ESC_EA3031AA Assembled 80 216811 5021467 Escherichia coli / Shigella;94.44% 60 1262 3.51 ESC_HA9073AA_AS 28644 28644 28644 28644 28644 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B1 05_fastbaps 18_fastbaps A ESC_IA0816AA_AS No ESC_EA4691AA 3-S1R SRR4067507;ILLUMINA;Paired;;SRX2054711 Human 2008 Faecal Human Human Homo sapiens; human faeces 2008 NA NA NA Oceania Australia New South Wales NA Sydney NA NA NA University of Melbourne Escherichia coli NA NA NA NA NA NA NA PRJNA335932 SRP082992 NA SAMN05567342 SRS1646783 2/9/16 1/9/16 ESC_EA4691AA Assembled 112 383834 5253617 Escherichia coli / Shigella;100.0% 135 3738 3.51 ESC_IA0816AA_AS 29936 29936 29936 29936 10747 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_IA0804AA_AS No ESC_EA4703AA 22.1-R1 SRR4067495;ILLUMINA;Paired;;SRX2054699 Human 2010 Faecal Human Human Homo sapiens; human faeces 2010 NA NA NA Oceania Australia New South Wales NA Sydney NA NA NA University of Melbourne Escherichia coli NA NA NA NA NA NA NA PRJNA335932 SRP082992 NA SAMN05567347 SRS1646771 2/9/16 1/9/16 ESC_EA4703AA Assembled 124 204877 5212449 Escherichia coli / Shigella;98.51% 122 1792 3.51 ESC_IA0804AA_AS 29990 29990 4005 4005 4005 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_IA0801AA_AS No ESC_EA4706AA 14.2-R2 SRR4067492;ILLUMINA;Paired;;SRX2054696 Human 2009 Faecal Human Human Homo sapiens; human faeces 2009 NA NA NA Oceania Australia New South Wales NA Sydney NA NA NA University of Melbourne Escherichia coli NA NA NA NA NA NA NA PRJNA335932 SRP082992 NA SAMN05567346 SRS1646768 2/9/16 1/9/16 ESC_EA4706AA Assembled 104 177665 5257410 Escherichia coli / Shigella;100.0% 161 6568 3.51 ESC_IA0801AA_AS 29945 29945 29936 29936 10747 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_IA1449AA_AS No ESC_EA5299AA 185854 SRR4184715;ILLUMINA;Paired;;SRX2143278 Human 2015 NA Human Human Human; Homo sapiens 2015 10 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05735286 SRS1674813 9/9/16 8/9/16 ESC_EA5299AA Assembled 51 268873 5103644 Escherichia coli / Shigella;100.0% 70 2017 3.51 ESC_IA1449AA_AS 30434 30434 30434 30434 30434 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IA2269AA_AS No ESC_EA5882AA MOD1-EC728 SRR4263656;ILLUMINA;Paired;300;SRX2176050 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591695 SRS1703344 20/9/16 1/1/15 ESC_EA5882AA Assembled 94 162802 5338948 Escherichia coli / Shigella;99.06% 194 4925 3.51 ESC_IA2269AA_AS 30978 30978 30978 30978 30978 30978 30978 8375 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH27 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 19_fastbaps A ESC_IA2264AA_AS No ESC_EA5887AA MOD1-EC723 SRR4263651;ILLUMINA;Paired;300;SRX2176045 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591656 SRS1703339 20/9/16 1/1/15 ESC_EA5887AA Assembled 119 282192 5158925 Escherichia coli / Shigella;95.35% 99 2852 3.51 ESC_IA2264AA_AS 30927 30927 30927 30927 10747 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IA2262AA_AS No ESC_EA5889AA MOD1-EC721 SRR4263649;ILLUMINA;Paired;300;SRX2176043 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O18Ac:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591658 SRS1703337 20/9/16 1/1/15 ESC_EA5889AA Assembled 112 196584 5144827 Escherichia coli / Shigella;98.65% 97 2422 3.51 ESC_IA2262AA_AS 30929 30929 30929 30929 30929 22501 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IA2257AA_AS No ESC_EA5894AA MOD1-EC715 SRR4263644;ILLUMINA;Paired;300;SRX2176038 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591664 SRS1703331 20/9/16 1/1/15 ESC_EA5894AA Assembled 92 282245 5092300 Escherichia coli / Shigella;100.0% 73 1073 3.51 ESC_IA2257AA_AS 30979 30979 30979 30979 30979 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_IA2239AA_AS No ESC_EA5912AA MOD1-EC696 SRR4262586;ILLUMINA;Paired;300;SRX2176019 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591533 SRS1703313 20/9/16 1/1/15 ESC_EA5912AA Assembled 86 203996 5337152 Escherichia coli / Shigella;89.18% 75 2116 3.51 ESC_IA2239AA_AS 30904 30904 30904 30904 30904 30904 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 1 05_fastbaps 18_fastbaps A ESC_IA2233AA_AS No ESC_EA5918AA MOD1-EC690 SRR4261933;ILLUMINA;Paired;300;SRX2176013 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591539 SRS1703307 20/9/16 1/1/15 ESC_EA5918AA Assembled 68 407132 5074049 Escherichia coli / Shigella;100.0% 62 2084 3.51 ESC_IA2233AA_AS 30905 30905 30905 30905 30905 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_IA2226AA_AS No ESC_EA5925AA MOD1-EC678 SRR4261196;ILLUMINA;Paired;300;SRX2176006 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591551 SRS1703300 20/9/16 1/1/15 ESC_EA5925AA Assembled 129 226018 5106884 Escherichia coli / Shigella;100.0% 95 2127 3.51 ESC_IA2226AA_AS 30866 30866 30866 30866 29665 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IA2225AA_AS No ESC_EA5926AA MOD1-EC677 SRR4261195;ILLUMINA;Paired;300;SRX2176005 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591552 SRS1703299 20/9/16 1/1/15 ESC_EA5926AA Assembled 144 188273 5031904 Escherichia coli / Shigella;100.0% 88 1103 3.51 ESC_IA2225AA_AS 30867 30867 30867 30867 1678 1678 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IA2221AA_AS No ESC_EA5930AA MOD1-EC670 SRR4261107;ILLUMINA;Paired;300;SRX2176001 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O1:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591559 SRS1703295 20/9/16 1/1/15 ESC_EA5930AA Assembled 87 358821 5061964 Escherichia coli / Shigella;100.0% 73 1563 3.51 ESC_IA2221AA_AS 30941 30941 30941 30941 30941 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH250 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IA2220AA_AS No ESC_EA5931AA MOD1-EC669 SRR4261001;ILLUMINA;Paired;300;SRX2176000 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591560 SRS1703294 20/9/16 1/1/15 ESC_EA5931AA Assembled 80 282308 5182575 Escherichia coli / Shigella;100.0% 88 2418 3.51 ESC_IA2220AA_AS 30949 30949 30949 30949 30949 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_JA4785AA_AS No ESC_FA0428AA 282455 SRR4788217;ILLUMINA;Paired;;SRX2318421 Human 2016 NA Human Human Human; Homo sapiens 2016 7 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05966727 SRS1775016 3/11/16 3/11/16 ESC_FA0428AA Assembled 81 175799 5126583 Escherichia coli / Shigella;100.0% 143 2474 3.51 ESC_JA4785AA_AS 36995 36995 36995 36995 36995 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_JA4751AA_AS No ESC_FA0462AA 241732 SRR4788139;ILLUMINA;Paired;;SRX2318342 Human 2016 NA Human Human Human; Homo sapiens 2016 3 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05966639 SRS1774941 3/11/16 3/11/16 ESC_FA0462AA Assembled 45 274442 5038547 Escherichia coli / Shigella;98.55% 98 3367 3.51 ESC_JA4751AA_AS 21374 21374 21374 21374 21374 3473 3473 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_JA4609AA_AS No ESC_FA0604AA 215090 SRR4787723;ILLUMINA;Paired;;SRX2317926 Human 2016 NA Human Human Human; Homo sapiens 2016 2 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05965727 SRS1774535 3/11/16 2/11/16 ESC_FA0604AA Assembled 44 211775 5104415 Escherichia coli / Shigella;98.61% 106 3150 3.51 ESC_JA4609AA_AS 35521 35521 35521 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_JA4581AA_AS No ESC_FA0632AA 241731 SRR4787399;ILLUMINA;Paired;;SRX2317602 Human 2016 NA Human Human Human; Homo sapiens 2016 3 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05965689 SRS1774214 3/11/16 2/11/16 ESC_FA0632AA Assembled 67 203930 5047087 Escherichia coli / Shigella;100.0% 113 2430 3.51 ESC_JA4581AA_AS 21374 21374 21374 21374 21374 3473 3473 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_JA4566AA_AS No ESC_FA0647AA 168528 SRR4787373;ILLUMINA;Paired;;SRX2317576 Human 2015 NA Human Human Human; Homo sapiens 2015 9 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05965657 SRS1774188 3/11/16 2/11/16 ESC_FA0647AA Assembled 60 264072 5207983 Escherichia coli / Shigella;100.0% 144 3060 3.51 ESC_JA4566AA_AS 34881 34881 34881 34881 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 08_fastbaps 35_fastbaps C ESC_JA4488AA_AS No ESC_FA0725AA 215089 SRR4787218;ILLUMINA;Paired;;SRX2317421 Human 2016 NA Human Human Human; Homo sapiens 2016 2 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05965499 SRS1774040 3/11/16 2/11/16 ESC_FA0725AA Assembled 45 192020 5091031 Escherichia coli / Shigella;97.29% 89 2037 3.51 ESC_JA4488AA_AS 35521 35521 35521 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_JA4010AA_AS No ESC_FA1491AA 304251 SRR4897628;ILLUMINA;Paired;;SRX2326872 Human 2016 NA Human Human Human; Homo sapiens 2016 9 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05980888 SRS1782334 8/11/16 5/11/16 ESC_FA1491AA Assembled 61 238971 5274498 Escherichia coli / Shigella;100.0% 146 2944 3.51 ESC_JA4010AA_AS 35013 35013 35013 35013 35013 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 01_fastbaps 01_fastbaps J ESC_JA3948AA_AS No ESC_FA1553AA 200613 SRR4897466;ILLUMINA;Paired;;SRX2326738 Environment 2015 Environmental Environment ND/Others Enviromental 2015 12 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05980759 SRS1782198 8/11/16 5/11/16 ESC_FA1553AA Assembled 63 357762 4984132 Escherichia coli / Shigella;100.0% 62 2459 3.51 ESC_JA3948AA_AS 34922 34922 12209 12209 12209 12209 12209 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH54 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 02_fastbaps J ESC_JA3853AA_AS No ESC_FA1647AA 168529 SRR4897258;ILLUMINA;Paired;;SRX2326534 Human 2015 NA Human Human Human; Homo sapiens 2015 9 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05980464 SRS1782001 8/11/16 4/11/16 ESC_FA1647AA Assembled 70 263705 5210668 Escherichia coli / Shigella;100.0% 175 3298 3.51 ESC_JA3853AA_AS 34881 34881 34881 34881 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 08_fastbaps 35_fastbaps C ESC_JA3774AA_AS No ESC_FA1726AA 214593 SRR4897096;ILLUMINA;Paired;;SRX2326373 Human 2016 NA Human Human Human; Homo sapiens 2016 2 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN05980249 SRS1781806 8/11/16 4/11/16 ESC_FA1726AA Assembled 77 238356 5109509 Escherichia coli / Shigella;98.57% 108 3137 3.51 ESC_JA3774AA_AS 37159 35521 35521 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_JA5133AA_AS No ESC_FA2337AA 200611 SRR5006424;ILLUMINA;Paired;;SRX2338253 NA 2015 NA ND ND/Others Other 2015 12 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06006456 SRS1791261 14/11/16 9/11/16 ESC_FA2337AA Assembled 102 294089 4931463 Escherichia coli / Shigella;98.25% 80 1681 3.51 ESC_JA5133AA_AS 35808 34922 12209 12209 12209 12209 12209 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH54 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 02_fastbaps J ESC_JA9326AA_AS No ESC_FA2672AA 208734 SRR5024316;ILLUMINA;Paired;;SRX2351028 Human 2016 NA Human Human Human; Homo sapiens 2016 1 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06018996 SRS1801097 16/11/16 16/11/16 ESC_FA2672AA Assembled 68 191719 5070622 Escherichia coli / Shigella;98.91% 165 2784 3.51 ESC_JA9326AA_AS 36470 36470 36470 36470 36470 36470 36470 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 02_fastbaps 04_fastbaps D ESC_KA3859AA_AS No ESC_FA2770AA 208780 SRR5023949;ILLUMINA;Paired;;SRX2350651 Human 2016 NA Human Human Human; Homo sapiens 2016 1 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06018711 SRS1800751 16/11/16 16/11/16 ESC_FA2770AA Assembled 84 225408 5125752 Escherichia coli / Shigella;95.74% 146 2061 3.51 ESC_KA3859AA_AS 37628 37628 37628 37628 37628 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B- 03_fastbaps 08_fastbaps E ESC_KA4244AA_AS No ESC_FA2913AA 178630 SRR5018373;ILLUMINA;Paired;;SRX2346432 Human 2015 NA Human Human Human; Homo sapiens 2015 10 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06015619 SRS1797026 16/11/16 15/11/16 ESC_FA2913AA Assembled 64 167798 5230300 Escherichia coli / Shigella;100.0% 181 6755 3.51 ESC_KA4244AA_AS 36373 36373 36373 36373 36373 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_JA8368AA_AS No ESC_FA2923AA 178629 SRR5018354;ILLUMINA;Paired;;SRX2346413 Human 2015 NA Human Human Human; Homo sapiens 2015 10 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06015602 SRS1797009 16/11/16 15/11/16 ESC_FA2923AA Assembled 61 173578 5232988 Escherichia coli / Shigella;100.0% 195 4672 3.51 ESC_JA8368AA_AS 36373 36373 36373 36373 36373 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_JA8284AA_AS No ESC_FA2971AA 203671 SRR5018286;ILLUMINA;Paired;;SRX2346345 Human 2016 NA Human Human Human; Homo sapiens 2016 1 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06015307 SRS1796943 16/11/16 15/11/16 ESC_FA2971AA Assembled 79 261597 5120320 Escherichia coli / Shigella;100.0% 131 2534 3.51 ESC_JA8284AA_AS 36368 36368 36368 10150 10150 10150 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_JA8124AA_AS No ESC_FA2998AA 146041 SRR5017711;ILLUMINA;Paired;;SRX2346027 Human 2015 NA Human Human Human; Homo sapiens 2015 7 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06015059 SRS1796845 16/11/16 15/11/16 ESC_FA2998AA Assembled 67 98590 5529871 Escherichia coli / Shigella;99.28% 474 32347 3.51 ESC_JA8124AA_AS 36352 36352 36352 36352 36352 36352 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 1 0 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_JA7639AA_AS No ESC_FA3124AA 200614 SRR5005502;ILLUMINA;Paired;;SRX2337330 Environment 2015 Environmental Environment ND/Others Enviromental 2015 12 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06006083 SRS1790554 16/11/16 9/11/16 ESC_FA3124AA Assembled 110 357937 4987784 Escherichia coli / Shigella;100.0% 71 2018 3.51 ESC_JA7639AA_AS 34922 34922 12209 12209 12209 12209 12209 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH54 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 02_fastbaps J ESC_KA1594AA_AS No ESC_FA3808AA 203387 SRR5031235;ILLUMINA;Paired;;SRX2356443 Human 2016 NA Human Human Human; Homo sapiens 2016 1 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England NA NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06030878 SRS1805501 18/11/16 18/11/16 ESC_FA3808AA Assembled 64 261597 5118421 Escherichia coli / Shigella;100.0% 143 2715 3.51 ESC_KA1594AA_AS 36368 36368 36368 10150 10150 10150 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_JA9945AA_AS No ESC_FA3927AA 151074 SRR5029852;ILLUMINA;Paired;;SRX2355545 Human 2015 NA Human Human Human; Homo sapiens 2015 8 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England NA NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06029450 SRS1804933 18/11/16 18/11/16 ESC_FA3927AA Assembled 84 263882 5076518 Escherichia coli / Shigella;100.0% 132 3412 3.51 ESC_JA9945AA_AS 36546 36546 36546 36546 36546 36546 10419 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH1443 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 06_fastbaps 24_fastbaps B ESC_KA1451AA_AS No ESC_FA4069AA 238365 SRR5034983;ILLUMINA;Paired;;SRX2359552 Human 2016 NA Human Human Human; Homo sapiens 2016 3 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06039859 SRS1808117 20/11/16 19/11/16 ESC_FA4069AA Assembled 65 235574 5059470 Escherichia coli / Shigella;100.0% 126 3386 3.51 ESC_KA1451AA_AS 21374 21374 21374 21374 21374 3473 3473 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_KA0652AA_AS No ESC_FA4120AA 123850 SRR5033734;ILLUMINA;Paired;;SRX2358391 Human 2015 NA Human Human Human; Homo sapiens 2015 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06035381 SRS1807094 20/11/16 19/11/16 ESC_FA4120AA Assembled 104 186090 5178247 Escherichia coli / Shigella;100.0% 94 1512 3.51 ESC_KA0652AA_AS 36588 36588 36588 36588 36588 36588 8620 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 02_fastbaps 05_fastbaps D ESC_KA4597AA_AS No ESC_FA4134AA 200612 SRR5033720;ILLUMINA;Paired;;SRX2358377 Environment 2015 Environmental Environment ND/Others Enviromental 2015 12 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06035370 SRS1807082 20/11/16 19/11/16 ESC_FA4134AA Assembled 60 268586 4982492 Escherichia coli / Shigella;100.0% 83 2576 3.51 ESC_KA4597AA_AS 34922 34922 12209 12209 12209 12209 12209 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH54 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 02_fastbaps J ESC_KA6867AA_AS No ESC_FA4139AA 122664 SRR5033715;ILLUMINA;Paired;;SRX2358372 Human 2015 NA Human Human Human; Homo sapiens 2015 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06035357 SRS1807075 20/11/16 19/11/16 ESC_FA4139AA Assembled 59 358240 5118313 Escherichia coli / Shigella;100.0% 142 3049 3.51 ESC_KA6867AA_AS 36591 36591 36591 36591 4076 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_KA0889AA_AS No ESC_FA4149AA 123943 SRR5033705;ILLUMINA;Paired;;SRX2358362 Human 2015 NA Human Human Human; Homo sapiens 2015 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06035349 SRS1807065 20/11/16 19/11/16 ESC_FA4149AA Assembled 34 133063 5212068 Escherichia coli / Shigella;100.0% 135 8910 3.51 ESC_KA0889AA_AS 36619 36619 36619 36619 36619 36619 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_KA4607AA_AS No ESC_FA4159AA 119523 SRR5033666;ILLUMINA;Paired;;SRX2358334 Human 2015 NA Human Human Human; Homo sapiens 2015 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06035336 SRS1807057 20/11/16 19/11/16 ESC_FA4159AA Assembled 100 273264 5111413 Escherichia coli / Shigella;100.0% 137 2181 3.51 ESC_KA4607AA_AS 37837 37837 37837 37837 37837 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KA0604AA_AS No ESC_FA4168AA 122690 SRR5033657;ILLUMINA;Paired;;SRX2358325 Human 2015 NA Human Human Human; Homo sapiens 2015 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN06035344 SRS1807048 20/11/16 19/11/16 ESC_FA4168AA Assembled 96 270308 5124986 Escherichia coli / Shigella;100.0% 157 2297 3.51 ESC_KA0604AA_AS 36591 36591 36591 36591 4076 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_KA9324AA_AS No ESC_FA5756AA D5063 "ERR1697208;ILLUMINA;Paired;300;ERX1766716,ERR1697207;ILLUMINA;Paired;300;ERX1766715" Other 2015 NA Laboratory NA Rat; Laboratory derived mutant 2015 5 NA NA Europe United Kingdom NA NA NA NA NA NA LSHTM Escherichia coli NA NA NA NA NA NA NA PRJEB16318 ERP018171 NA SAMEA4516835 ERS1416014 21/12/16 20/12/16 ESC_FA5756AA Assembled 71 170919 5379671 Escherichia coli / Shigella;98.73% 105 5692 3.51 ESC_KA9324AA_AS 38756 24526 24526 5077 5077 5077 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_KA9267AA_AS No ESC_FA5757AA D3537 "ERR1697206;ILLUMINA;Paired;300;ERX1766714,ERR1697205;ILLUMINA;Paired;300;ERX1766713" Other 2015 NA Laboratory NA Rat; Laboratory derived mutant 2015 5 NA NA Europe United Kingdom NA NA NA NA NA NA LSHTM Escherichia coli NA NA NA NA NA NA NA PRJEB16318 ERP018171 NA SAMEA4516834 ERS1416013 21/12/16 20/12/16 ESC_FA5757AA Assembled 45 327452 5378467 Escherichia coli / Shigella;98.81% 116 7824 3.51 ESC_KA9267AA_AS 38718 24526 24526 5077 5077 5077 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_KA9265AA_AS No ESC_FA5758AA D3516 "ERR1697203;ILLUMINA;Paired;300;ERX1766711,ERR1697204;ILLUMINA;Paired;300;ERX1766712" Other 2015 NA Laboratory NA Rat; Laboratory derived mutant 2015 5 NA NA Europe United Kingdom NA NA NA NA NA NA LSHTM Escherichia coli NA NA NA NA NA NA NA PRJEB16318 ERP018171 NA SAMEA4516833 ERS1416012 21/12/16 20/12/16 ESC_FA5758AA Assembled 49 174037 5381564 Escherichia coli / Shigella;98.59% 97 7106 3.51 ESC_KA9265AA_AS 38719 38719 24526 5077 5077 5077 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_KA9598AA_AS No ESC_FA5948AA A192P1 ERR1442931;ILLUMINA;Paired;200;ERX1513307 Other 2008 SEPEC Human NA rat; blood 2008 1 NA NA Europe United Kingdom NA NA NA NA NA NA LSHTM Escherichia coli NA NA NA NA NA NA NA PRJEB14305 ERP015941 NA SAMEA4026807 ERS1197917 3/1/17 2/1/17 ESC_FA5948AA Assembled 34 177370 5281212 Escherichia coli / Shigella;98.7% 113 10420 3.51 ESC_KA9598AA_AS 38833 38833 24526 5077 5077 5077 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_KA9597AA_AS No ESC_FA5949AA A192 ERR1442928;ILLUMINA;Paired;200;ERX1513305 Human 1977 SEPEC Human Human Human; Blood 1977 1 NA NA Europe Netherlands NA NA NA NA NA NA LSHTM Escherichia coli NA NA NA NA NA NA NA PRJEB14305 ERP015941 NA SAMEA4026804 ERS1197914 3/1/17 2/1/17 ESC_FA5949AA Assembled 46 186153 5379678 Escherichia coli / Shigella;98.87% 129 5654 3.51 ESC_KA9597AA_AS 38834 38719 24526 5077 5077 5077 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/netherlands.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_LA4540AA_AS No ESC_FA9337AA OS_09_006_-1 "SRR5296385;ILLUMINA;Paired;;SRX2598659,SRR5246542;ILLUMINA;Paired;;SRX2552982,SRR5246528;ILLUMINA;Paired;;SRX2552968,SRR5292149;ILLUMINA;Paired;;SRX2594792,SRR5285438;ILLUMINA;Paired;;SRX2588982,SRR5296534;ILLUMINA;Paired;;SRX2598802,SRR5296499;ILLUMINA;Paired;;SRX2598767" Human 2014 UPEC Human Human Homo sapiens; urine 2014 NA NA NA North America United States Missouri NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA269984 SRP053140 NA SAMN04606411 SRS1970764 26/2/17 24/2/17 ESC_FA9337AA Assembled 357 144340 5247912 Escherichia coli / Shigella;96.5% 251 3947 3.61 ESC_LA4540AA_AS 41240 41240 41240 41240 10792 9859 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 1 0 1 0 0 1 F52:B- 03_fastbaps 09_fastbaps E ESC_LA4539AA_AS No ESC_FA9338AA OS_02_035_15 "SRR5296539;ILLUMINA;Paired;;SRX2598807,SRR5246780;ILLUMINA;Paired;;SRX2553220,SRR5291295;ILLUMINA;Paired;;SRX2593938,SRR5296483;ILLUMINA;Paired;;SRX2598754,SRR5296531;ILLUMINA;Paired;;SRX2598799,SRR5285437;ILLUMINA;Paired;;SRX2588981,SRR5246794;ILLUMINA;Paired;;SRX2553234" Human 2014 UPEC Human Human Homo sapiens; urine 2014 NA NA NA North America United States Missouri NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA269984 SRP053140 NA SAMN04606423 SRS1971007 26/2/17 24/2/17 ESC_FA9338AA Assembled 366 153739 5269600 Escherichia coli / Shigella;97.6% 316 6672 3.61 ESC_LA4539AA_AS 41237 41237 41237 41237 11845 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_LA4536AA_AS No ESC_FA9341AA OS_09_005_14 "SRR5246783;ILLUMINA;Paired;;SRX2553223,SRR5291297;ILLUMINA;Paired;;SRX2593940,SRR5296530;ILLUMINA;Paired;;SRX2598798,SRR5285409;ILLUMINA;Paired;;SRX2588953,SRR5296386;ILLUMINA;Paired;;SRX2598660" Human 2014 UPEC Human Human Homo sapiens; urine 2014 NA NA NA North America United States Missouri NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA269984 SRP053140 NA SAMN04606415 SRS1971009 26/2/17 24/2/17 ESC_FA9341AA Assembled 430 203838 5027870 Escherichia coli / Shigella;97.81% 144 2539 3.61 ESC_LA4536AA_AS 41238 41238 41238 41238 41238 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_LA5763AA_AS No ESC_GA0241AA MOD1-EC5197 SRR5330882;ILLUMINA;Paired;300;SRX2629877 Human 1987 UPEC Human Human Homo sapiens; human_Urine 1987 8 NA NA North America United States Texas NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN04279535 SRS2039716 10/3/17 9/3/17 ESC_GA0241AA Assembled 76 240663 4976862 Escherichia coli / Shigella;100.0% 46 1328 3.61 ESC_LA5763AA_AS 41903 41903 41903 41903 41903 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 06_fastbaps 22_fastbaps B ESC_LA5735AA_AS No ESC_GA0269AA MOD1-EC674 SRR5330839;ILLUMINA;Paired;300;SRX2629835 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States Washington NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O2:K1:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN05591555 SRS2039681 10/3/17 9/3/17 ESC_GA0269AA Assembled 87 171799 5129792 Escherichia coli / Shigella;100.0% 119 3471 3.61 ESC_LA5735AA_AS 41910 30955 30955 30955 30955 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH252 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_LA5890AA_AS No ESC_GA0332AA MOD1-EC5349 SRR5336249;ILLUMINA;Paired;300;SRX2633671 Environment 2003 Environmental Environment Water/River Waste Water-Waste Water 2003 8 NA NA North America United States North Dakota NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O18 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN06555267 SRS2042901 12/3/17 10/3/17 ESC_GA0332AA Assembled 101 149801 5286004 Escherichia coli / Shigella;100.0% 103 2262 3.61 ESC_LA5890AA_AS 42020 42020 42020 42020 42020 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_LA5874AA_AS No ESC_GA0348AA MOD1-EC5957 SRR5336203;ILLUMINA;Paired;300;SRX2633624 Bovine 2008 ExPEC Livestock Bovine liver 2008 11 NA NA North America United States Wisconsin NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA O18:H7 NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN06555246 SRS2042855 10/3/17 10/3/17 ESC_GA0348AA Assembled 165 419092 5256436 Escherichia coli / Shigella;98.86% 137 2059 3.61 ESC_LA5874AA_AS 42019 42019 42019 42019 42019 42019 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 06_fastbaps 23_fastbaps B ESC_NA4065AA_AS No ESC_GA4501AA M676943 SRR5512243;ILLUMINA;Paired;;SRX2786212 Human 2015 Faecal Human Human Homo sapiens; Human faecal 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893786 SRS2168213 5/5/17 5/5/17 ESC_GA4501AA Assembled 57 99310 5026653 Escherichia coli / Shigella;96.31% 216 13367 3.61 ESC_NA4065AA_AS 45091 45091 45091 45091 45091 45091 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 F29:B10 03_fastbaps 09_fastbaps E ESC_NA4062AA_AS No ESC_GA4504AA 46-1-TI2 SRR5512240;ILLUMINA;Paired;;SRX2786209 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893703 SRS2168216 5/5/17 5/5/17 ESC_GA4504AA Assembled 79 358331 5195387 Escherichia coli / Shigella;100.0% 144 1637 3.61 ESC_NA4062AA_AS 22056 22056 22056 22056 22056 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_NA4060AA_AS No ESC_GA4506AA M668546 SRR5512238;ILLUMINA;Paired;;SRX2786207 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893782 SRS2168211 5/5/17 5/5/17 ESC_GA4506AA Assembled 64 111762 5208986 Escherichia coli / Shigella;97.07% 213 7836 3.61 ESC_NA4060AA_AS 45078 45078 45078 45078 9986 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_NA4059AA_AS No ESC_GA4507AA M666694 SRR5512237;ILLUMINA;Paired;;SRX2786206 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893781 SRS2168210 5/5/17 5/5/17 ESC_GA4507AA Assembled 72 191189 5131443 Escherichia coli / Shigella;100.0% 99 2277 3.61 ESC_NA4059AA_AS 45085 45085 45085 45085 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_NA4058AA_AS No ESC_GA4508AA M665752 SRR5512236;ILLUMINA;Paired;;SRX2786205 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893780 SRS2168209 5/5/17 5/5/17 ESC_GA4508AA Assembled 55 144982 5344013 Escherichia coli / Shigella;98.19% 190 6933 3.61 ESC_NA4058AA_AS 45090 45090 45090 45090 45090 45090 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 08_fastbaps 35_fastbaps C ESC_NA4057AA_AS No ESC_GA4509AA M664361 SRR5512235;ILLUMINA;Paired;;SRX2786204 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893779 SRS2168208 5/5/17 5/5/17 ESC_GA4509AA Assembled 63 158282 5177834 Escherichia coli / Shigella;97.74% 153 5677 3.61 ESC_NA4057AA_AS 45086 45086 45086 45086 45086 40809 40809 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH15 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 07_fastbaps 31_fastbaps H ESC_NA4054AA_AS No ESC_GA4512AA M663105 SRR5512232;ILLUMINA;Paired;;SRX2786201 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893776 SRS2168205 5/5/17 5/5/17 ESC_GA4512AA Assembled 67 72618 5001158 Escherichia coli / Shigella;100.0% 170 28870 3.61 ESC_NA4054AA_AS 45077 45077 45077 45077 45077 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA4051AA_AS No ESC_GA4515AA 45-1-TI1 SRR5512229;ILLUMINA;Paired;;SRX2786198 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893702 SRS2168202 5/5/17 5/5/17 ESC_GA4515AA Assembled 60 138292 5158194 Escherichia coli / Shigella;100.0% 88 10621 3.61 ESC_NA4051AA_AS 21908 21908 21908 21908 21908 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_NA4049AA_AS No ESC_GA4517AA M653497 SRR5512227;ILLUMINA;Paired;;SRX2786196 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893772 SRS2168201 5/5/17 5/5/17 ESC_GA4517AA Assembled 60 144727 5160549 Escherichia coli / Shigella;99.11% 171 5631 3.61 ESC_NA4049AA_AS 45073 45073 45073 45073 40421 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_NA4044AA_AS No ESC_GA4522AA M638488 SRR5512222;ILLUMINA;Paired;;SRX2786191 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893767 SRS2168195 5/5/17 5/5/17 ESC_GA4522AA Assembled 73 111340 5096711 Escherichia coli / Shigella;96.71% 126 10581 3.61 ESC_NA4044AA_AS 45067 45067 45067 45067 45067 45067 8620 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_NA4043AA_AS No ESC_GA4523AA M638178 SRR5512221;ILLUMINA;Paired;;SRX2786190 Human 2015 UPEC Human Human Homo sapiens; Human urinary tract 2015 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893766 SRS2168194 5/5/17 5/5/17 ESC_GA4523AA Assembled 51 66103 5443613 Escherichia coli / Shigella;94.06% 455 32430 3.61 ESC_NA4043AA_AS 45070 45070 45070 4004 4004 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 08_fastbaps 34_fastbaps C ESC_NA4040AA_AS No ESC_GA4526AA 40-1-R9 SRR5512218;ILLUMINA;Paired;;SRX2786187 Human 2010 Faecal Human Human Homo sapiens; Human rectal biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893701 SRS2168191 5/5/17 5/5/17 ESC_GA4526AA Assembled 67 91077 5035985 Escherichia coli / Shigella;97.68% 114 16639 3.61 ESC_NA4040AA_AS 22057 21894 21894 21894 21894 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H- https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_NA4038AA_AS No ESC_GA4528AA H437 SRR5512216;ILLUMINA;Paired;;SRX2786185 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893762 SRS2168189 5/5/17 5/5/17 ESC_GA4528AA Assembled 38 149617 5182395 Escherichia coli / Shigella;100.0% 117 13722 3.61 ESC_NA4038AA_AS 45105 45105 45105 45105 22283 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_NA4037AA_AS No ESC_GA4529AA H434 SRR5512215;ILLUMINA;Paired;;SRX2786184 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893761 SRS2168188 5/5/17 5/5/17 ESC_GA4529AA Assembled 58 268804 5169001 Escherichia coli / Shigella;100.0% 69 2937 3.61 ESC_NA4037AA_AS 45131 45131 45131 45131 45131 45131 8439 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 04_fastbaps D ESC_NA4036AA_AS No ESC_GA4530AA H365 SRR5512214;ILLUMINA;Paired;;SRX2786183 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893760 SRS2168186 5/5/17 5/5/17 ESC_GA4530AA Assembled 131 302823 5169686 Escherichia coli / Shigella;100.0% 89 2489 3.61 ESC_NA4036AA_AS 45080 45080 45080 45080 45080 45080 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 01_fastbaps 03_fastbaps J ESC_NA4034AA_AS No ESC_GA4532AA H355 SRR5512212;ILLUMINA;Paired;;SRX2786181 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893758 SRS2168184 5/5/17 5/5/17 ESC_GA4532AA Assembled 73 360396 5061553 Escherichia coli / Shigella;100.0% 67 2285 3.61 ESC_NA4034AA_AS 45056 45056 45056 45056 45056 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA4033AA_AS No ESC_GA4533AA H249 SRR5512211;ILLUMINA;Paired;;SRX2786180 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893757 SRS2168185 5/5/17 5/5/17 ESC_GA4533AA Assembled 103 204007 5182085 Escherichia coli / Shigella;97.92% 138 4090 3.61 ESC_NA4033AA_AS 45061 45045 45045 45045 21988 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_NA4032AA_AS No ESC_GA4534AA H244 SRR5512210;ILLUMINA;Paired;;SRX2786179 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893756 SRS2168183 5/5/17 5/5/17 ESC_GA4534AA Assembled 58 108428 5228499 Escherichia coli / Shigella;96.31% 232 8064 3.61 ESC_NA4032AA_AS 45049 45049 45049 45049 45049 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F107:B1 03_fastbaps 11_fastbaps E ESC_NA4031AA_AS No ESC_GA4535AA H219 SRR5512209;ILLUMINA;Paired;;SRX2786178 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893755 SRS2168182 5/5/17 5/5/17 ESC_GA4535AA Assembled 52 360395 5162988 Escherichia coli / Shigella;100.0% 46 2534 3.61 ESC_NA4031AA_AS 45054 45054 45054 45054 45054 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA4030AA_AS No ESC_GA4536AA H154 SRR5512208;ILLUMINA;Paired;;SRX2786177 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893754 SRS2168180 5/5/17 5/5/17 ESC_GA4536AA Assembled 94 294829 5270506 Escherichia coli / Shigella;98.61% 95 4090 3.61 ESC_NA4030AA_AS 45055 45055 45055 45055 45055 45055 45055 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 Other Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 09_fastbaps 37_fastbaps G ESC_NA4029AA_AS No ESC_GA4537AA 39-1-AC10 SRR5512207;ILLUMINA;Paired;;SRX2786176 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893700 SRS2168181 5/5/17 5/5/17 ESC_GA4537AA Assembled 72 87660 5012092 Escherichia coli / Shigella;97.78% 123 13124 3.61 ESC_NA4029AA_AS 21896 21894 21894 21894 21894 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O- H- https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_NA4028AA_AS No ESC_GA4538AA H151 SRR5512206;ILLUMINA;Paired;;SRX2786175 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893753 SRS2168179 5/5/17 5/5/17 ESC_GA4538AA Assembled 113 268774 5268045 Escherichia coli / Shigella;98.65% 102 3029 3.61 ESC_NA4028AA_AS 45055 45055 45055 45055 45055 45055 45055 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 Other Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 09_fastbaps 37_fastbaps G ESC_NA4027AA_AS No ESC_GA4539AA H148 SRR5512205;ILLUMINA;Paired;;SRX2786174 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893752 SRS2168178 5/5/17 5/5/17 ESC_GA4539AA Assembled 114 360348 5098358 Escherichia coli / Shigella;100.0% 59 1896 3.61 ESC_NA4027AA_AS 45059 45059 45059 45059 22283 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_NA4026AA_AS No ESC_GA4540AA H144 SRR5512204;ILLUMINA;Paired;;SRX2786173 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893751 SRS2168177 5/5/17 5/5/17 ESC_GA4540AA Assembled 117 522721 5190817 Escherichia coli / Shigella;100.0% 40 1581 3.61 ESC_NA4026AA_AS 45060 45060 45060 45060 45060 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA4025AA_AS No ESC_GA4541AA H140 SRR5512203;ILLUMINA;Paired;;SRX2786172 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893750 SRS2168176 5/5/17 5/5/17 ESC_GA4541AA Assembled 51 86913 5167666 Escherichia coli / Shigella;98.5% 216 16335 3.61 ESC_NA4025AA_AS 45046 45046 45046 45046 45046 45046 45046 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 03_fastbaps 10_fastbaps E ESC_NA4024AA_AS No ESC_GA4542AA H112 SRR5512202;ILLUMINA;Paired;;SRX2786171 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893749 SRS2168174 5/5/17 5/5/17 ESC_GA4542AA Assembled 37 125620 5143788 Escherichia coli / Shigella;97.88% 118 13998 3.61 ESC_NA4024AA_AS 45050 45050 45050 45050 45050 9691 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 05_fastbaps 18_fastbaps A ESC_NA4023AA_AS No ESC_GA4543AA H104 SRR5512201;ILLUMINA;Paired;;SRX2786170 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893748 SRS2168175 5/5/17 5/5/17 ESC_GA4543AA Assembled 79 271528 5110137 Escherichia coli / Shigella;100.0% 69 2160 3.61 ESC_NA4023AA_AS 45057 45057 45057 45057 45057 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_NA4022AA_AS No ESC_GA4544AA H087 SRR5512200;ILLUMINA;Paired;;SRX2786169 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893747 SRS2168172 5/5/17 5/5/17 ESC_GA4544AA Assembled 109 242370 5163213 Escherichia coli / Shigella;100.0% 74 1484 3.61 ESC_NA4022AA_AS 45052 45052 45052 45052 22086 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA4021AA_AS No ESC_GA4545AA H083 SRR5512199;ILLUMINA;Paired;;SRX2786168 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893746 SRS2168173 5/5/17 5/5/17 ESC_GA4545AA Assembled 86 342975 5283752 Escherichia coli / Shigella;97.47% 115 3156 3.61 ESC_NA4021AA_AS 45053 45053 45053 45053 45053 45053 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 06_fastbaps 23_fastbaps B ESC_NA4020AA_AS No ESC_GA4546AA H077 SRR5512198;ILLUMINA;Paired;;SRX2786167 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893745 SRS2168171 5/5/17 5/5/17 ESC_GA4546AA Assembled 96 220247 5256181 Escherichia coli / Shigella;97.26% 163 4329 3.61 ESC_NA4020AA_AS 45045 45045 45045 45045 21988 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_NA4019AA_AS No ESC_GA4547AA H062 SRR5512197;ILLUMINA;Paired;;SRX2786166 Human 2001 UPEC Human Human Homo sapiens; Human urinary tract 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893744 SRS2168170 5/5/17 5/5/17 ESC_GA4547AA Assembled 69 234921 5186432 Escherichia coli / Shigella;98.77% 137 3120 3.61 ESC_NA4019AA_AS 45043 45043 45043 45043 9986 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_NA4018AA_AS No ESC_GA4548AA 35-9-TI14 SRR5512196;ILLUMINA;Paired;;SRX2786165 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893699 SRS2168168 5/5/17 5/5/17 ESC_GA4548AA Assembled 64 103695 5004851 Escherichia coli / Shigella;97.82% 140 19114 3.61 ESC_NA4018AA_AS 45047 21897 21894 21894 21894 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O- H- https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_NA4016AA_AS No ESC_GA4550AA H008 SRR5512194;ILLUMINA;Paired;;SRX2786163 Human 2001 SEPEC Human Human Homo sapiens; Human blood 2001 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893742 SRS2168167 5/5/17 5/5/17 ESC_GA4550AA Assembled 90 335419 5234641 Escherichia coli / Shigella;100.0% 60 3162 3.61 ESC_NA4016AA_AS 45044 45044 45044 45044 45044 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA4015AA_AS No ESC_GA4551AA E9345 SRR5512193;ILLUMINA;Paired;;SRX2786162 Environment 2013 Environmental Environment Water/River ND 2013 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893741 SRS2168166 5/5/17 5/5/17 ESC_GA4551AA Assembled 89 114018 5270679 Escherichia coli / Shigella;98.8% 118 6914 3.61 ESC_NA4015AA_AS 1111 1111 1111 1111 1111 1111 1111 1111 1108 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O? H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 16_fastbaps F ESC_NA4013AA_AS No ESC_GA4553AA E7615 SRR5512191;ILLUMINA;Paired;;SRX2786160 Environment 2013 Environmental Environment Water/River ND 2013 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893739 SRS2168165 5/5/17 5/5/17 ESC_GA4553AA Assembled 133 342984 5081947 Escherichia coli / Shigella;100.0% 44 1269 3.61 ESC_NA4013AA_AS 45042 45042 45042 45042 45042 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_NA4012AA_AS No ESC_GA4554AA E7087 SRR5512190;ILLUMINA;Paired;;SRX2786159 Environment 2013 Environmental Environment Water/River ND 2013 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893738 SRS2168162 5/5/17 5/5/17 ESC_GA4554AA Assembled 102 230262 5188155 Escherichia coli / Shigella;100.0% 81 2808 3.61 ESC_NA4012AA_AS 45048 45048 45048 45048 45048 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_NA4010AA_AS No ESC_GA4556AA DMG-2012 SRR5512188;ILLUMINA;Paired;;SRX2786157 Human 2012 Faecal Human Human Homo sapiens; Human faeces 2012 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893736 SRS2168163 5/5/17 5/5/17 ESC_GA4556AA Assembled 38 58707 5189805 Escherichia coli / Shigella;91.2% 262 22734 3.61 ESC_NA4010AA_AS 45036 45036 45036 22283 22283 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_NA4009AA_AS No ESC_GA4557AA CD-62-LN-E12 SRR5512187;ILLUMINA;Paired;;SRX2786156 Human 2010 Faecal Human Human Homo sapiens; Human gut resection 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893735 SRS2168160 5/5/17 5/5/17 ESC_GA4557AA Assembled 29 203930 5143802 Escherichia coli / Shigella;99.07% 150 3816 3.61 ESC_NA4009AA_AS 45035 45035 45035 45035 45035 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 03_fastbaps 11_fastbaps E ESC_NA4008AA_AS No ESC_GA4558AA CD-34-LN SRR5512186;ILLUMINA;Paired;;SRX2786155 Human 2010 Faecal Human Human Homo sapiens; Human gut resection 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893734 SRS2168159 5/5/17 5/5/17 ESC_GA4558AA Assembled 97 358348 4955481 Escherichia coli / Shigella;100.0% 62 783 3.61 ESC_NA4008AA_AS 45039 45039 45039 45039 45039 45039 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 18_fastbaps A ESC_NA4006AA_AS No ESC_GA4560AA CD-27-IM1 SRR5512184;ILLUMINA;Paired;;SRX2786153 Human 2010 Faecal Human Human Homo sapiens; Human gut resection 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893733 SRS2168157 5/5/17 5/5/17 ESC_GA4560AA Assembled 112 217272 4962725 Escherichia coli / Shigella;100.0% 87 1897 3.61 ESC_NA4006AA_AS 45033 45033 45033 45033 45033 45033 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 17_fastbaps A ESC_NA4002AA_AS No ESC_GA4564AA C3-28 SRR5512180;ILLUMINA;Paired;;SRX2786149 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893729 SRS2168153 5/5/17 5/5/17 ESC_GA4564AA Assembled 46 84834 5010526 Escherichia coli / Shigella;100.0% 175 25258 3.61 ESC_NA4002AA_AS 45021 45021 45021 45021 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_NA4001AA_AS No ESC_GA4565AA C3-27 SRR5512179;ILLUMINA;Paired;;SRX2786148 Poultry 2014 RMAE Animal Feed NA Poultry; Retail poultry meat 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893728 SRS2168152 5/5/17 5/5/17 ESC_GA4565AA Assembled 42 87406 5015386 Escherichia coli / Shigella;100.0% 153 24339 3.61 ESC_NA4001AA_AS 45021 45021 45021 45021 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_NA3997AA_AS No ESC_GA4569AA BS84 SRR5512175;ILLUMINA;Paired;;SRX2786144 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893724 SRS2168148 5/5/17 5/5/17 ESC_GA4569AA Assembled 76 110316 5135037 Escherichia coli / Shigella;96.4% 170 11277 3.61 ESC_NA3997AA_AS 45031 45031 45031 45031 45031 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F90:A2:B33 03_fastbaps 08_fastbaps E ESC_NA3996AA_AS No ESC_GA4570AA 2H-327-14 SRR5512174;ILLUMINA;Paired;;SRX2786143 Human 2011 Faecal Human Human Homo sapiens; Human faecal 2011 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893697 SRS2168147 5/5/17 5/5/17 ESC_GA4570AA Assembled 22 55363 5093060 Escherichia coli / Shigella;100.0% 192 45185 3.61 ESC_NA3996AA_AS 45026 45026 45026 45026 45026 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA3995AA_AS No ESC_GA4571AA BS76 SRR5512173;ILLUMINA;Paired;;SRX2786142 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893723 SRS2168146 5/5/17 5/5/17 ESC_GA4571AA Assembled 42 135027 5124585 Escherichia coli / Shigella;97.87% 114 10383 3.61 ESC_NA3995AA_AS 45034 45032 45032 45032 1105 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA3994AA_AS No ESC_GA4572AA BS58 SRR5512172;ILLUMINA;Paired;;SRX2786141 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893722 SRS2168144 5/5/17 5/5/17 ESC_GA4572AA Assembled 59 130513 5207011 Escherichia coli / Shigella;98.24% 128 8101 3.61 ESC_NA3994AA_AS 45032 45032 45032 45032 1105 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2/O50 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA3993AA_AS No ESC_GA4573AA BS45 SRR5512171;ILLUMINA;Paired;;SRX2786140 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893721 SRS2168143 5/5/17 5/5/17 ESC_GA4573AA Assembled 46 268770 5095696 Escherichia coli / Shigella;97.96% 78 4000 3.61 ESC_NA3993AA_AS 45040 45040 45040 45040 45040 45040 45040 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 Other Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 09_fastbaps 40_fastbaps G ESC_NA3991AA_AS No ESC_GA4575AA BS20 SRR5512169;ILLUMINA;Paired;;SRX2786138 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893719 SRS2168141 5/5/17 5/5/17 ESC_GA4575AA Assembled 48 133050 5217030 Escherichia coli / Shigella;99.02% 185 8840 3.61 ESC_NA3991AA_AS 45022 45022 4005 4005 4005 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_NA3990AA_AS No ESC_GA4576AA BS165 SRR5512168;ILLUMINA;Paired;;SRX2786137 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893718 SRS2168140 5/5/17 5/5/17 ESC_GA4576AA Assembled 37 156594 5358775 Escherichia coli / Shigella;93.07% 152 11937 3.61 ESC_NA3990AA_AS 45014 45014 45014 45014 45014 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B- 16 08_fastbaps 35_fastbaps C ESC_NA3989AA_AS No ESC_GA4577AA BS157 SRR5512167;ILLUMINA;Paired;;SRX2786136 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893717 SRS2168139 5/5/17 5/5/17 ESC_GA4577AA Assembled 70 174934 5231605 Escherichia coli / Shigella;97.84% 143 3691 3.61 ESC_NA3989AA_AS 45011 45011 45011 45011 45011 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_NA3988AA_AS No ESC_GA4578AA BS150 SRR5512166;ILLUMINA;Paired;;SRX2786135 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893716 SRS2168145 5/5/17 5/5/17 ESC_GA4578AA Assembled 57 120093 5316128 Escherichia coli / Shigella;97.73% 318 23720 3.61 ESC_NA3988AA_AS 45099 45099 45099 45099 45099 28140 28140 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH483 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 03_fastbaps 10_fastbaps E ESC_NA3987AA_AS No ESC_GA4579AA BS142 SRR5512165;ILLUMINA;Paired;;SRX2786134 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893715 SRS2168138 5/5/17 5/5/17 ESC_GA4579AA Assembled 67 151173 5160255 Escherichia coli / Shigella;98.97% 160 3655 3.61 ESC_NA3987AA_AS 45018 45018 45018 45018 45018 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_NA3985AA_AS No ESC_GA4581AA 2H-31-1 SRR5512163;ILLUMINA;Paired;;SRX2786132 Human 2011 Faecal Human Human Homo sapiens; Human faecal 2011 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893696 SRS2168136 5/5/17 5/5/17 ESC_GA4581AA Assembled 22 89590 4921750 Escherichia coli / Shigella;100.0% 121 36703 3.61 ESC_NA3985AA_AS 45017 45017 45017 45017 45017 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA3984AA_AS No ESC_GA4582AA BS117 SRR5512162;ILLUMINA;Paired;;SRX2786131 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893713 SRS2168134 5/5/17 5/5/17 ESC_GA4582AA Assembled 49 163078 5234286 Escherichia coli / Shigella;98.62% 167 10279 3.61 ESC_NA3984AA_AS 4005 4005 4005 4005 4005 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_NA3983AA_AS No ESC_GA4583AA BS11 SRR5512161;ILLUMINA;Paired;;SRX2786130 Human 2014 SEPEC Human Human Homo sapiens; Human blood 2014 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893712 SRS2168135 5/5/17 5/5/17 ESC_GA4583AA Assembled 45 134916 5316144 Escherichia coli / Shigella;100.0% 250 14797 3.61 ESC_NA3983AA_AS 4004 4004 4004 4004 4004 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 08_fastbaps 34_fastbaps C ESC_NA3979AA_AS No ESC_GA4587AA 61-1-TI1 SRR5512157;ILLUMINA;Paired;;SRX2786126 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893708 SRS2168130 5/5/17 5/5/17 ESC_GA4587AA Assembled 67 183628 5162236 Escherichia coli / Shigella;100.0% 187 3231 3.61 ESC_NA3979AA_AS 21992 21992 21992 21992 21992 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 F100:B10 06_fastbaps 22_fastbaps B ESC_NA3976AA_AS No ESC_GA4590AA 52-1-TI3 SRR5512154;ILLUMINA;Paired;;SRX2786123 Human 2010 Faecal Human Human Homo sapiens; Human terminal ileum biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893705 SRS2168127 5/5/17 5/5/17 ESC_GA4590AA Assembled 97 193256 5185785 Escherichia coli / Shigella;99.07% 151 2379 3.61 ESC_NA3976AA_AS 21988 21988 21988 21988 21988 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F100:B10 06_fastbaps 22_fastbaps B ESC_NA3972AA_AS No ESC_GA4594AA 5-2-R8 SRR5512150;ILLUMINA;Paired;;SRX2786119 Human 2010 Faecal Human Human Homo sapiens; Human rectal biopsy 2010 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893704 SRS2168123 5/5/17 5/5/17 ESC_GA4594AA Assembled 33 64072 5049245 Escherichia coli / Shigella;100.0% 182 43689 3.61 ESC_NA3972AA_AS 22086 22086 22086 22086 22086 1105 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_NA3970AA_AS No ESC_GA4596AA 2H-265-13 SRR5512148;ILLUMINA;Paired;;SRX2786117 Human 2011 Faecal Human Human Homo sapiens; Human faecal 2011 NA NA NA Oceania Australia NA NA NA NA NA NA The Australian National University Escherichia coli NA NA NA NA NA NA NA PRJNA385370 SRP106504 NA SAMN06893694 SRS2168121 5/5/17 5/5/17 ESC_GA4596AA Assembled 48 120706 5153367 Escherichia coli / Shigella;98.75% 111 17397 3.61 ESC_NA3970AA_AS 45008 45008 4005 4005 4005 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O- H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_PA1111AA_AS No ESC_GA9535AA MER-21 SRR5936499;ILLUMINA;Paired;;SRX3096458 Human 2014 SEPEC Human Human blood; Homo sapiens; Age: 66; female; Blood 2014 NA NA NA Oceania New Zealand Auckland NA Auckland NA NA NA University of Queensland Escherichia coli NA NA NA NA NA NA NA PRJNA398288 SRP115500 NA SAMN07510215 SRS2433239 16/8/17 15/8/17 ESC_GA9535AA Assembled 67 149771 5260131 Escherichia coli / Shigella;84.91% 92 27291 3.61 ESC_PA1111AA_AS 50249 50249 50249 50249 50249 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/new-zealand.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_PA1356AA_AS No ESC_GA9716AA ECOL-17-VL-NY-GA-0007 SRR5928130;ILLUMINA;Paired;500;SRX3088452 Human 2017 UPEC Human Human urine 2017 NA NA NA North America United States Georgia NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA324565 SRP115280 NA SAMN07229836 SRS2426193 20/8/17 17/8/17 ESC_GA9716AA Assembled 99 338220 5138521 Escherichia coli / Shigella;98.71% 111 3132 3.61 ESC_PA1356AA_AS 50395 50395 50395 50395 50395 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2/O50 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_PA1355AA_AS No ESC_GA9717AA ECOL-17-VL-NY-MS-0006 SRR5928129;ILLUMINA;Paired;500;SRX3088451 NA 2017 UPEC ND Canine canine urine swab 2017 3 NA NA North America United States Mississippi NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA324565 SRP115280 NA SAMN07229835 SRS2426192 20/8/17 17/8/17 ESC_GA9717AA Assembled 181 360511 5084529 Escherichia coli / Shigella;100.0% 53 1131 3.61 ESC_PA1355AA_AS 50384 50384 50384 50384 29606 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_PA7839AA_AS No ESC_HA3117AA 2016WHVSWG SRR6076831;ILLUMINA;Paired;;SRX3216750 Human 2016 NA Human Human ND 2016 NA NA NA Europe Denmark NA NA NA NA NA NA Institut for Medizinische Mikrobiologie Escherichia coli NA NA NA NA NA NA NA PRJNA401522 SRP116854 NA SAMN07702326 SRS2541825 26/9/17 26/9/17 ESC_HA3117AA Assembled 102 64086 5386427 Escherichia coli / Shigella;95.68% 287 15971 3.61 ESC_PA7839AA_AS 52348 46569 46569 46569 46569 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_QA2182AA_AS No ESC_HA6196AA TW18258 SRR6179004;ILLUMINA;Paired;500;SRX3289628 Human 2008 Faecal Human Human stool; Homo sapiens 2008 NA NA NA North America United States Michigan NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA368991 SRP101451 NA SAMN07717136 SRS2598979 17/10/17 16/10/17 ESC_HA6196AA Assembled 110 31730 5021527 Escherichia coli / Shigella;100.0% 321 34705 3.61 ESC_QA2182AA_AS 54426 54426 54426 54426 54426 54426 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 18_fastbaps A ESC_QA2890AA_AS No ESC_HA6728AA 383957 SRR6185876;ILLUMINA;Paired;;SRX3296024 Environment 2017 Environmental Environment ND/Others Enviromental 2017 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN07807529 SRS2604631 19/10/17 19/10/17 ESC_HA6728AA Assembled 98 17502 4621996 Escherichia coli / Shigella;100.0% 568 25439 3.61 ESC_QA2890AA_AS 54848 34922 12209 12209 12209 12209 12209 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH54 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 02_fastbaps J ESC_QA3565AA_AS No ESC_HA7407AA MOD1-EC4538 SRR6219639;ILLUMINA;Paired;500;SRX3328354 Environment 2017 Environmental Environment Soil/Dust soil 2017 NA NA NA North America United States Ohio NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN07747799 SRS2631714 26/10/17 25/10/17 ESC_HA7407AA Assembled 111 303184 5346224 Escherichia coli / Shigella;97.1% 88 3351 3.61 ESC_QA3565AA_AS 55428 55428 55428 55428 55428 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_QA3677AA_AS No ESC_HA7438AA ABU 91 SRR6224580;ILLUMINA;Paired;;SRX3333215 Human 2010 UPEC Human NA urinary tract; urinary tract 2010 NA NA NA Europe Hungary NA NA NA NA NA NA University of Muenster Escherichia coli NA NA NA NA NA NA NA PRJNA415978 SRP121701 NA SAMN07839400 SRS2635642 27/10/17 26/10/17 ESC_HA7438AA Assembled 231 269062 5315215 Escherichia coli / Shigella;98.81% 127 1276 3.61 ESC_QA3677AA_AS 55875 55875 55875 55875 55875 55875 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/hungary.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F75:A19:B24 06_fastbaps 24_fastbaps B ESC_QA3675AA_AS No ESC_HA7440AA ABU 9 SRR6224582;ILLUMINA;Paired;;SRX3333213 Human 2010 UPEC Human NA urinary tract; urinary tract 2010 NA NA NA Europe Hungary NA NA NA NA NA NA University of Muenster Escherichia coli NA NA NA NA NA NA NA PRJNA415978 SRP121701 NA SAMN07839396 SRS2635640 27/10/17 26/10/17 ESC_HA7440AA Assembled 268 204002 5248138 Escherichia coli / Shigella;98.26% 167 1084 3.61 ESC_QA3675AA_AS 55877 55877 55877 34216 34216 9830 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/hungary.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 06_fastbaps 23_fastbaps B ESC_QA3671AA_AS No ESC_HA7443AA ABU 106 SRR6224585;ILLUMINA;Paired;;SRX3333210 Human 2010 UPEC Human NA urinary tract; urinary tract 2010 NA NA NA Europe Hungary NA NA NA NA NA NA University of Muenster Escherichia coli NA NA NA NA NA NA NA PRJNA415978 SRP121701 NA SAMN07839401 SRS2635638 27/10/17 26/10/17 ESC_HA7443AA Assembled 53 132050 4969654 Escherichia coli / Shigella;100.0% 172 9593 3.61 ESC_QA3671AA_AS 55507 55507 55507 55507 55507 55507 8485 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/hungary.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F24:B1 03_fastbaps 10_fastbaps E ESC_QA9416AA_AS No ESC_HA8879AA 91 DRR103321;ILLUMINA;Paired;600;DRX096741 Human 2011 UPEC Human Human urine; Homo sapiens 2011 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077729 DRS052655 17/11/17 17/11/17 ESC_HA8879AA Assembled 124 239459 5143281 Escherichia coli / Shigella;100.0% 89 3652 3.61 ESC_QA9416AA_AS 57104 57104 57104 57104 57104 15051 9672 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 Other Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B10 05_fastbaps 20_fastbaps A ESC_QA8950AA_AS No ESC_HA8883AA 57 DRR103317;ILLUMINA;Paired;600;DRX096737 Human 2011 UPEC Human Human urine; Homo sapiens 2011 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077725 DRS052651 17/11/17 17/11/17 ESC_HA8883AA Assembled 81 122609 5079159 Escherichia coli / Shigella;100.0% 117 16397 3.61 ESC_QA8950AA_AS 56981 56981 56981 56981 56981 56981 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B- 05_fastbaps 17_fastbaps A ESC_QA8948AA_AS No ESC_HA8885AA 129 DRR103315;ILLUMINA;Paired;600;DRX096735 Human 2011 UPEC Human Human urine; Homo sapiens 2011 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077723 DRS052649 17/11/17 17/11/17 ESC_HA8885AA Assembled 110 239542 5239054 Escherichia coli / Shigella;100.0% 100 4550 3.61 ESC_QA8948AA_AS 56984 56984 56984 56984 56984 56984 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_QA8947AA_AS No ESC_HA8888AA 6 DRR103312;ILLUMINA;Paired;600;DRX096732 Human 2011 UPEC Human Human urine; Homo sapiens 2011 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077720 DRS052646 17/11/17 17/11/17 ESC_HA8888AA Assembled 193 265730 5123252 Escherichia coli / Shigella;100.0% 67 2456 3.61 ESC_QA8947AA_AS 57019 57019 57019 57019 28118 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_QA8963AA_AS No ESC_HA9124AA KS34_11C DRR103076;ILLUMINA;Paired;600;DRX096496 Bovine 2013 Faecal Livestock Bovine feces; Bos taurus 2013 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077484 DRS052410 17/11/17 17/11/17 ESC_HA9124AA Assembled 139 289141 5290444 Escherichia coli / Shigella;87.15% 107 2516 3.61 ESC_QA8963AA_AS 57083 57083 57083 57083 57083 57083 28050 28050 1108 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 15_fastbaps F ESC_QA5645AA_AS No ESC_HA9143AA KS04_7G DRR103057;ILLUMINA;Paired;600;DRX096477 Bovine 2013 Faecal Livestock Bovine feces; Bos taurus 2013 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077465 DRS052391 17/11/17 17/11/17 ESC_HA9143AA Assembled 153 295531 5233438 Escherichia coli / Shigella;97.77% 57 1022 3.61 ESC_QA5645AA_AS 56442 56442 56442 56442 56442 56442 56442 23651 1108 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 13_fastbaps F ESC_QA5539AA_AS No ESC_HA9249AA JML298 DRR102951;ILLUMINA;Paired;600;DRX096371 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077359 DRS052285 17/11/17 17/11/17 ESC_HA9249AA Assembled 102 74818 5271781 Escherichia coli / Shigella;100.0% 199 16983 3.61 ESC_QA5539AA_AS 56415 56415 56415 56415 56415 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 06_fastbaps 22_fastbaps B ESC_QA7947AA_AS No ESC_HA9253AA JML294 DRR102947;ILLUMINA;Paired;600;DRX096367 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077355 DRS052281 17/11/17 17/11/17 ESC_HA9253AA Assembled 83 50838 5071775 Escherichia coli / Shigella;98.6% 221 29731 3.61 ESC_QA7947AA_AS 56852 56852 56852 56852 56852 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O? H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_QA6616AA_AS No ESC_HA9256AA JML291 DRR102944;ILLUMINA;Paired;600;DRX096364 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077352 DRS052278 17/11/17 17/11/17 ESC_HA9256AA Assembled 40 50011 5103943 Escherichia coli / Shigella;100.0% 202 37917 3.61 ESC_QA6616AA_AS 56551 56551 56551 56551 56551 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O- H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_RA0152AA_AS No ESC_HA9257AA JML290 DRR102943;ILLUMINA;Paired;600;DRX096363 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077351 DRS052277 17/11/17 17/11/17 ESC_HA9257AA Assembled 87 109307 5276893 Escherichia coli / Shigella;100.0% 251 16969 3.61 ESC_RA0152AA_AS 57628 57628 57628 57628 57628 57628 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_QA8859AA_AS No ESC_HA9258AA JML288 DRR102942;ILLUMINA;Paired;600;DRX096362 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077350 DRS052276 17/11/17 17/11/17 ESC_HA9258AA Assembled 54 105590 5187105 Escherichia coli / Shigella;100.0% 150 18782 3.61 ESC_QA8859AA_AS 56998 56998 56998 56998 56998 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F35:A2:B20 05_fastbaps 18_fastbaps A ESC_QA7942AA_AS No ESC_HA9259AA JML287 DRR102941;ILLUMINA;Paired;600;DRX096361 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077349 DRS052275 17/11/17 17/11/17 ESC_HA9259AA Assembled 50 59456 5182462 Escherichia coli / Shigella;98.74% 226 31531 3.61 ESC_QA7942AA_AS 56792 56792 56792 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_QA7878AA_AS No ESC_HA9282AA JML262 DRR102918;ILLUMINA;Paired;600;DRX096338 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077326 DRS052252 17/11/17 17/11/17 ESC_HA9282AA Assembled 69 64460 5202609 Escherichia coli / Shigella;98.37% 224 21297 3.61 ESC_QA7878AA_AS 56764 56764 56764 56764 56764 12576 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O? H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B10 09_fastbaps 39_fastbaps G ESC_QA7877AA_AS No ESC_HA9283AA JML261 DRR102917;ILLUMINA;Paired;600;DRX096337 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077325 DRS052251 17/11/17 17/11/17 ESC_HA9283AA Assembled 48 51810 5000793 Escherichia coli / Shigella;100.0% 213 25641 3.61 ESC_QA7877AA_AS 56759 56759 56759 56759 56759 12581 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_QA5498AA_AS No ESC_HA9290AA JML248 DRR102910;ILLUMINA;Paired;600;DRX096330 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077318 DRS052244 17/11/17 17/11/17 ESC_HA9290AA Assembled 63 157168 5071484 Escherichia coli / Shigella;94.93% 90 11433 3.61 ESC_QA5498AA_AS 56417 56417 56417 56417 28118 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O? H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_QA7860AA_AS No ESC_HA9307AA JML225 DRR102893;ILLUMINA;Paired;600;DRX096313 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077301 DRS052227 17/11/17 17/11/17 ESC_HA9307AA Assembled 82 86628 5241775 Escherichia coli / Shigella;98.6% 217 41822 3.61 ESC_QA7860AA_AS 56766 56766 56766 56766 56766 56766 56766 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_QA5479AA_AS No ESC_HA9309AA JML223 DRR102891;ILLUMINA;Paired;600;DRX096311 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077299 DRS052225 17/11/17 17/11/17 ESC_HA9309AA Assembled 75 105831 5187689 Escherichia coli / Shigella;98.11% 150 38237 3.61 ESC_QA5479AA_AS 56406 56406 56406 56406 56406 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 1 0 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_QA8168AA_AS No ESC_HA9317AA JML211 DRR102883;ILLUMINA;Paired;600;DRX096303 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077291 DRS052217 17/11/17 17/11/17 ESC_HA9317AA Assembled 62 115085 5144914 Escherichia coli / Shigella;99.19% 188 34253 3.61 ESC_QA8168AA_AS 56844 56844 56844 56844 56844 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F40:A5:B1 06_fastbaps 22_fastbaps B ESC_QA7392AA_AS No ESC_HA9358AA JML159 DRR102842;ILLUMINA;Paired;600;DRX096262 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077250 DRS052176 17/11/17 17/11/17 ESC_HA9358AA Assembled 191 134006 5125321 Escherichia coli / Shigella;98.6% 101 18822 3.61 ESC_QA7392AA_AS 56709 56709 56709 56709 56709 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_QA7385AA_AS No ESC_HA9367AA JML148 DRR102833;ILLUMINA;Paired;600;DRX096253 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077241 DRS052167 17/11/17 17/11/17 ESC_HA9367AA Assembled 61 176035 5254520 Escherichia coli / Shigella;100.0% 118 11085 3.61 ESC_QA7385AA_AS 56679 56679 56679 56679 56679 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F95:B10 06_fastbaps 22_fastbaps B ESC_QA7345AA_AS No ESC_HA9405AA JML103 DRR102795;ILLUMINA;Paired;600;DRX096215 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077203 DRS052129 17/11/17 17/11/17 ESC_HA9405AA Assembled 55 58727 5084610 Escherichia coli / Shigella;97.49% 233 34281 3.61 ESC_QA7345AA_AS 56651 56651 56651 56651 56651 56651 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_QA5378AA_AS No ESC_HA9410AA JML098 DRR102790;ILLUMINA;Paired;600;DRX096210 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077198 DRS052124 17/11/17 17/11/17 ESC_HA9410AA Assembled 75 178117 5211244 Escherichia coli / Shigella;100.0% 97 8732 3.61 ESC_QA5378AA_AS 56399 56399 56399 56399 56399 56399 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_QA6460AA_AS No ESC_HA9442AA JML064 DRR102758;ILLUMINA;Paired;600;DRX096178 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077166 DRS052092 17/11/17 17/11/17 ESC_HA9442AA Assembled 108 129751 5150701 Escherichia coli / Shigella;98.74% 109 13403 3.61 ESC_QA6460AA_AS 56553 56553 56553 56553 28118 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_QA7981AA_AS No ESC_HA9463AA JML043 DRR102737;ILLUMINA;Paired;600;DRX096157 Human 2015 Faecal Human Human feces; Homo sapiens 2015 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077145 DRS052071 17/11/17 17/11/17 ESC_HA9463AA Assembled 65 124302 5274709 Escherichia coli / Shigella;100.0% 144 21451 3.61 ESC_QA7981AA_AS 56791 56791 56791 56791 56791 15036 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_QA7591AA_AS No ESC_HA9577AA MHE25 DRR102623;ILLUMINA;Paired;600;DRX096043 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077031 DRS051957 17/11/17 17/11/17 ESC_HA9577AA Assembled 62 64740 5114939 Escherichia coli / Shigella;100.0% 251 23467 3.61 ESC_QA7591AA_AS 56697 56697 56697 28140 28140 28140 28140 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH483 O? H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 10_fastbaps E ESC_QA5208AA_AS No ESC_HA9580AA MHE21 DRR102620;ILLUMINA;Paired;600;DRX096040 Human 2005 SEPEC Human Human blood; Homo sapiens 2005 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077028 DRS051954 17/11/17 17/11/17 ESC_HA9580AA Assembled 77 97930 5146390 Escherichia coli / Shigella;98.97% 146 15885 3.61 ESC_QA5208AA_AS 56374 56374 56374 56374 56374 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_QA5199AA_AS No ESC_HA9589AA MHE09 DRR102611;ILLUMINA;Paired;600;DRX096031 Human 2003 SEPEC Human Human blood; Homo sapiens 2003 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077019 DRS051945 17/11/17 17/11/17 ESC_HA9589AA Assembled 34 171820 5169127 Escherichia coli / Shigella;100.0% 89 6831 3.61 ESC_QA5199AA_AS 56370 56370 56370 56370 56370 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_QA8186AA_AS No ESC_HA9590AA MHE08 DRR102610;ILLUMINA;Paired;600;DRX096030 Human 2003 SEPEC Human Human blood; Homo sapiens 2003 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077018 DRS051944 17/11/17 17/11/17 ESC_HA9590AA Assembled 77 357947 5073462 Escherichia coli / Shigella;100.0% 69 1768 3.61 ESC_QA8186AA_AS 56864 56864 56864 56864 56864 12581 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_QA5188AA_AS No ESC_HA9600AA KME05 DRR102600;ILLUMINA;Paired;600;DRX096020 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077008 DRS051934 17/11/17 17/11/17 ESC_HA9600AA Assembled 84 268994 5269379 Escherichia coli / Shigella;97.58% 217 4400 3.61 ESC_QA5188AA_AS 56359 56359 56359 28140 28140 28140 28140 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH483 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 10_fastbaps E ESC_QA7446AA_AS No ESC_HA9605AA KIE06 DRR102595;ILLUMINA;Paired;600;DRX096015 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077003 DRS051929 17/11/17 17/11/17 ESC_HA9605AA Assembled 41 152267 5341080 Escherichia coli / Shigella;100.0% 159 7080 3.61 ESC_QA7446AA_AS 56673 56673 56673 56673 56673 56673 9614 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH15 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 07_fastbaps 31_fastbaps H ESC_QA8121AA_AS No ESC_HA9607AA KIE04 DRR102593;ILLUMINA;Paired;600;DRX096013 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077001 DRS051927 17/11/17 17/11/17 ESC_HA9607AA Assembled 71 204007 5205717 Escherichia coli / Shigella;98.02% 168 4869 3.61 ESC_QA8121AA_AS 56826 56826 56359 28140 28140 28140 28140 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH483 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 10_fastbaps E ESC_QA5919AA_AS No ESC_HA9608AA KIE03 DRR102592;ILLUMINA;Paired;600;DRX096012 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00077000 DRS051926 17/11/17 17/11/17 ESC_HA9608AA Assembled 75 180031 5229676 Escherichia coli / Shigella;100.0% 123 3465 3.61 ESC_QA5919AA_AS 56471 56471 56471 56471 56471 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F24:B- 08_fastbaps 36_fastbaps C ESC_QA8120AA_AS No ESC_HA9610AA KIE01 DRR102590;ILLUMINA;Paired;600;DRX096010 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076998 DRS051924 17/11/17 17/11/17 ESC_HA9610AA Assembled 54 228402 5120095 Escherichia coli / Shigella;100.0% 147 4775 3.61 ESC_QA8120AA_AS 56809 56363 56363 56363 56363 12581 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_QA5908AA_AS No ESC_HA9622AA IWE02 DRR102578;ILLUMINA;Paired;600;DRX095998 Human 2006 SEPEC Human Human blood; Homo sapiens 2006 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076986 DRS051912 17/11/17 17/11/17 ESC_HA9622AA Assembled 60 287025 5299331 Escherichia coli / Shigella;98.77% 198 4912 3.61 ESC_QA5908AA_AS 56464 56464 56464 56464 56464 15036 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 17_fastbaps A ESC_QA5163AA_AS No ESC_HA9625AA IKE01 DRR102575;ILLUMINA;Paired;600;DRX095995 Human 2008 SEPEC Human Human blood; Homo sapiens 2008 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076983 DRS051909 17/11/17 17/11/17 ESC_HA9625AA Assembled 32 281970 5116397 Escherichia coli / Shigella;100.0% 136 6898 3.61 ESC_QA5163AA_AS 56363 56363 56363 56363 56363 12581 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_QA5905AA_AS No ESC_HA9627AA IIE04 DRR102573;ILLUMINA;Paired;600;DRX095993 Human 2007 SEPEC Human Human blood; Homo sapiens 2007 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076981 DRS051907 17/11/17 17/11/17 ESC_HA9627AA Assembled 67 266962 5118768 Escherichia coli / Shigella;100.0% 80 1821 3.61 ESC_QA5905AA_AS 56481 56481 56481 56481 56481 12576 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F40:B10 09_fastbaps 39_fastbaps G ESC_QA7440AA_AS No ESC_HA9630AA CM32 DRR102570;ILLUMINA;Paired;600;DRX095990 Human 2006 UPEC Human Human urine; Homo sapiens 2006 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076978 DRS051904 17/11/17 17/11/17 ESC_HA9630AA Assembled 164 227437 5190262 Escherichia coli / Shigella;91.86% 123 3886 3.61 ESC_QA7440AA_AS 56694 56694 56694 56694 56694 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_QA7811AA_AS No ESC_HA9633AA CM1 DRR102567;ILLUMINA;Paired;600;DRX095987 Human 2006 UPEC Human Human urine; Homo sapiens 2006 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076975 DRS051901 17/11/17 17/11/17 ESC_HA9633AA Assembled 93 155302 5162040 Escherichia coli / Shigella;98.53% 99 7531 3.61 ESC_QA7811AA_AS 56758 56758 56758 56758 56758 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_QA7436AA_AS No ESC_HA9635AA CM17 DRR102565;ILLUMINA;Paired;600;DRX095985 Human 2006 UPEC Human Human urine; Homo sapiens 2006 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076973 DRS051899 17/11/17 17/11/17 ESC_HA9635AA Assembled 46 60526 5119626 Escherichia coli / Shigella;100.0% 227 37004 3.61 ESC_QA7436AA_AS 56676 56676 56676 56676 56676 12581 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_QA6930AA_AS No ESC_HA9639AA CM12 DRR102561;ILLUMINA;Paired;600;DRX095981 Human 2006 UPEC Human Human urine; Homo sapiens 2006 NA NA NA Asia Japan NA NA NA NA NA NA KYUSHU Escherichia coli NA NA NA NA NA NA NA PRJDB5579 DRP003877 NA SAMD00076969 DRS051895 17/11/17 17/11/17 ESC_HA9639AA Assembled 66 172105 5236317 Escherichia coli / Shigella;98.77% 128 5058 3.61 ESC_QA6930AA_AS 56616 56616 56616 56616 56616 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/japan.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F35:B10 06_fastbaps 22_fastbaps B ESC_QA9654AA_AS No ESC_HA9671AA ECOL-17-VL-SD-MI-0019 SRR6312080;ILLUMINA;Paired;500;SRX3412341 Canine 2017 UPEC Companion Animal NA Canine bladder-Canis lupus familiaris 2017 5 NA NA North America United States Michigan NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA318591 SRP125339 NA SAMN07709880 SRS2705545 21/11/17 21/11/17 ESC_HA9671AA Assembled 135 204007 5156978 Escherichia coli / Shigella;95.08% 87 7019 3.61 ESC_QA9654AA_AS 57136 57136 57136 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_RA4044AA_AS No ESC_IA3094AA AC11319 traces-0MgtqBJ;ILLUMINA;Paired;;NA NA 2017 NA Environment ND/Others BREEDER 2017 NA NA NA Europe Germany NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 2/2/18 7/8/18 ESC_IA3094AA Assembled 108 204005 5097470 Escherichia coli / Shigella;100.0% 109 2737 3.61 ESC_RA4044AA_AS 60160 60160 60109 40562 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 C4:B1 02_fastbaps 05_fastbaps D ESC_RA4047AA_AS No ESC_IA3097AA AC11477 traces-0dgwRrE;ILLUMINA;Paired;;NA NA 2017 NA Environment ND/Others BREEDER 2017 NA NA NA Europe Germany NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 2/2/18 7/8/18 ESC_IA3097AA Assembled 67 342322 5123041 Escherichia coli / Shigella;100.0% 67 2630 3.61 ESC_RA4047AA_AS 60161 60136 60136 60136 60136 60136 8439 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F76:B1 02_fastbaps 04_fastbaps D ESC_RA4048AA_AS No ESC_IA3098AA AC11345 traces-0Afufib;ILLUMINA;Paired;;NA NA 2017 NA Environment ND/Others BREEDER 2017 NA NA NA Europe Germany NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 2/2/18 7/8/18 ESC_IA3098AA Assembled 97 234699 5105609 Escherichia coli / Shigella;100.0% 120 4904 3.61 ESC_RA4048AA_AS 60163 60109 60109 40562 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 C4:B1 02_fastbaps 05_fastbaps D ESC_RA4050AA_AS No ESC_IA3100AA AC11478 traces-0eiMNbQ;ILLUMINA;Paired;;NA NA 2017 NA Environment ND/Others BREEDER 2017 NA NA NA Europe Germany NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 2/2/18 7/8/18 ESC_IA3100AA Assembled 66 360210 5126170 Escherichia coli / Shigella;100.0% 62 2198 3.61 ESC_RA4050AA_AS 60161 60136 60136 60136 60136 60136 8439 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F76:B1 02_fastbaps 04_fastbaps D ESC_RA4068AA_AS No ESC_IA3118AA AC10764 traces-0cClETx;ILLUMINA;Paired;;NA NA 2017 NA Environment ND/Others BREEDER 2017 NA NA NA Europe Germany NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 2/2/18 7/8/18 ESC_IA3118AA Assembled 96 301871 5122684 Escherichia coli / Shigella;100.0% 61 1280 3.61 ESC_RA4068AA_AS 60136 60136 60136 60136 60136 60136 8439 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F76:B1 02_fastbaps 04_fastbaps D ESC_RA4278AA_AS No ESC_IA3269AA 10-13-2 "traces-0gIKSMn;ILLUMINA;Paired;;NA,traces-0srLMTW;ILLUMINA;Paired;;NA,traces-0iRmmHc;ILLUMINA;Paired;;NA" Poultry 2017 NA Poultry Avian BREEDER 2017 4 1 NA Europe Denmark NA NA NA NA NA NA cava@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 7/2/18 12/8/18 ESC_IA3269AA Assembled 55 213468 5136446 Escherichia coli / Shigella;98.77% 114 6719 3.61 ESC_RA4278AA_AS 60167 60167 60167 40562 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_RA4281AA_AS No ESC_IA3323AA 16/12/07 "traces-0PmKkZF;ILLUMINA;Paired;;NA,traces-0aVegbe;ILLUMINA;Paired;;NA,traces-0ovcXdA;ILLUMINA;Paired;;NA" Poultry 2017 NA Poultry Avian Breeder 2017 NA NA NA Europe Denmark NA NA NA NA NA NA cava@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 7/2/18 12/8/18 ESC_IA3323AA Assembled 73 237130 5135919 Escherichia coli / Shigella;98.64% 104 3582 3.61 ESC_RA4281AA_AS 60167 60167 60167 40562 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_RA4508AA_AS No ESC_IA3517AA MGH164 SRR6686513;ILLUMINA;Paired;;SRX3662703 Human 2015 NA Human Human Homo sapiens 2015 NA NA NA North America United States Massachusetts Suffolk County Boston NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA271899 SRP051949 NA SAMN04521913 SRS2925917 8/2/18 8/2/18 ESC_IA3517AA Assembled 143 129193 4949006 Escherichia coli / Shigella;96.01% 260 5518 3.61 ESC_RA4508AA_AS 60560 60560 60560 60560 60560 26607 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 02_fastbaps 06_fastbaps D ESC_RA7116AA_AS No ESC_IA5214AA 20441-1 SRR6821785;ILLUMINA;Paired;;SRX3778625 Bovine 2007 ExPEC Livestock Bovine Cygnus buccinator; brain 2007 10 NA NA North America United States Michigan NA NA NA 44.3 -85.6 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA230969 SRP058582 NA SAMN08668650 SRS3032457 10/3/18 9/3/18 ESC_IA5214AA Assembled 150 271723 5253983 Escherichia coli / Shigella;97.37% 113 48132 4 ESC_RA7116AA_AS 76770 76770 42019 42019 42019 42019 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 06_fastbaps 23_fastbaps B ESC_SA0489AA_AS No ESC_IA7809AA FSIS11809427 SRR7095947;ILLUMINA;Paired;500;SRX4024358 Bovine 2018 NA Livestock Bovine animal-cattle-heifer 2018 NA NA NA North America United States California NA NA NA NA NA "United States Department of Agriculture, Food Safety and Inspection Service" Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN09013516 SRS3244752 3/5/18 3/5/18 ESC_IA7809AA Assembled 121 251022 5179532 Escherichia coli / Shigella;95.52% 87 49542 4 ESC_SA0489AA_AS 63453 63453 63453 63453 63453 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_SA0482AA_AS No ESC_IA7816AA FSIS11809422 SRR7095838;ILLUMINA;Paired;500;SRX4024249 Bovine 2018 NA Livestock Bovine animal-cattle-heifer 2018 NA NA NA North America United States Kansas NA NA NA NA NA "United States Department of Agriculture, Food Safety and Inspection Service" Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN09013511 SRS3244642 3/5/18 3/5/18 ESC_IA7816AA Assembled 121 340722 5263562 Escherichia coli / Shigella;96.09% 93 43929 4 ESC_SA0482AA_AS 63461 63461 63461 63461 63461 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_SA2297AA_AS No ESC_IA9096AA 493472 SRR7187758;ILLUMINA;Paired;;SRX4104483 Human 2018 NA Human Human human; Homo sapiens 2018 2 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09228483 SRS3320381 21/5/18 21/5/18 ESC_IA9096AA Assembled 45 295894 5126243 Escherichia coli / Shigella;100.0% 105 25651 4 ESC_SA2297AA_AS 64698 64698 64698 64698 64698 64698 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F10:B- 05_fastbaps 17_fastbaps A ESC_SA2410AA_AS No ESC_IA9419AA 387112 SRR7191545;ILLUMINA;Paired;;SRX4108253 Human 2017 NA Human Human human; Homo sapiens 2017 6 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09232589 SRS3324016 22/5/18 22/5/18 ESC_IA9419AA Assembled 76 296095 5003899 Escherichia coli / Shigella;100.0% 99 12876 4 ESC_SA2410AA_AS 64545 64545 64545 64545 64545 9679 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 18_fastbaps A ESC_SA2788AA_AS No ESC_IA9691AA 526798 SRR7208638;ILLUMINA;Paired;;SRX4117530 Human 2018 NA Human Human human; Homo sapiens 2018 4 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09244108 SRS3332812 25/5/18 24/5/18 ESC_IA9691AA Assembled 58 294561 5182872 Escherichia coli / Shigella;98.96% 151 32527 4 ESC_SA2788AA_AS 64899 64899 64899 64899 35013 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 01_fastbaps 01_fastbaps J ESC_SA2728AA_AS No ESC_IA9751AA 388679 SRR7204197;ILLUMINA;Paired;;SRX4113194 Human 2017 NA Human Human human; Homo sapiens 2017 7 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09238330 SRS3328628 25/5/18 23/5/18 ESC_IA9751AA Assembled 30 281695 5100477 Escherichia coli / Shigella;100.0% 74 26366 4 ESC_SA2728AA_AS 64871 64871 64871 64871 64871 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_SA3661AA_AS No ESC_JA0611AA DH101 traces-0jVAtnx;ILLUMINA;Paired;;NA Poultry 2018 NA Livestock Avian Breeder 2018 NA NA NA Europe Denmark NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 31/5/18 3/12/18 ESC_JA0611AA Assembled 43 146819 5096859 Escherichia coli / Shigella;100.0% 144 46778 4 ESC_SA3661AA_AS 65094 65094 40562 40562 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_SA4839AA_AS No ESC_JA1610AA 406686 SRR7266386;ILLUMINA;Paired;;SRX4170409 Human 2006 NA Human Human human; Homo sapiens 2006 4 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09372336 SRS3382231 8/6/18 6/6/18 ESC_JA1610AA Assembled 43 237087 5142173 Escherichia coli / Shigella;100.0% 90 33446 4 ESC_SA4839AA_AS 66549 66549 66549 66549 66549 66549 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_SA5048AA_AS No ESC_JA1918AA 500315 SRR7276886;ILLUMINA;Paired;;SRX4180469 Human 2018 NA Human Human human; Homo sapiens 2018 2 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA NA NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09380250 SRS3391996 8/6/18 8/6/18 ESC_JA1918AA Assembled 33 151253 4842092 Escherichia coli / Shigella;100.0% 136 39273 4 ESC_SA5048AA_AS 7181 7181 7181 7181 7181 7181 7181 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 03_fastbaps 12_fastbaps E ESC_SA6572AA_AS No ESC_JA3337AA 410855 SRR7358054;ILLUMINA;Paired;;SRX4231138 Human 2017 NA Human Human human; Homo sapiens 2017 8 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA248792 SRP042645 NA SAMN09443984 SRS3429819 19/6/18 19/6/18 ESC_JA3337AA Assembled 48 285417 5103810 Escherichia coli / Shigella;100.0% 70 7739 4 ESC_SA6572AA_AS 67902 67902 67902 67902 67902 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_SA8301AA_AS Yes ESC_JA5690AA Chicken SRR7469840;ILLUMINA;Paired;;SRX4339670 Poultry 2008 APEC Poultry Avian Gallus gallus domesticus 2008 7 NA NA Oceania Australia NA NA NA NA NA NA "University of Technology, Sydney" Escherichia coli NA O1:H7 NA NA NA NA NA PRJNA479542 SRP151965 NA SAMN09579973 SRS3500570 4/7/18 4/7/18 ESC_JA5690AA Assembled 101 194623 5184682 Escherichia coli / Shigella;98.98% 140 35720 4 ESC_SA8301AA_AS 69269 69269 69269 45021 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_TA2436AA_AS No ESC_JA8574AA 414ESBA SRR7724574;ILLUMINA;Paired;;SRX4581342 Environment 2017 Environmental Wild Animal Avian Seagull; Chroicocephalus; ESBA 2017 NA NA NA Oceania Australia New South Wales NA NA NA NA NA Murdoch University Escherichia coli NA O50/O2:H7 NA NA NA NA NA PRJNA486855 SRP158447 NA SAMN09866863 SRS3695668 21/8/18 20/8/18 ESC_JA8574AA Assembled 43 256052 5132172 Escherichia coli / Shigella;100.0% 104 33716 4 ESC_TA2436AA_AS 71975 71975 71975 71975 71975 70926 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F35:B- 07_fastbaps 32_fastbaps H ESC_TA2365AA_AS No ESC_JA8645AA 432CREB SRR7724645;ILLUMINA;Paired;;SRX4581271 Environment 2017 Environmental Wild Animal Avian Seagull; Chroicocephalus; CREB 2017 NA NA NA Oceania Australia South Australia NA NA NA NA NA Murdoch University Escherichia coli NA O2:H4 NA NA NA NA NA PRJNA486855 SRP158447 NA SAMN09866879 SRS3695598 21/8/18 20/8/18 ESC_JA8645AA Assembled 66 141825 5181243 Escherichia coli / Shigella;98.33% 227 45399 4 ESC_TA2365AA_AS 71912 71912 71912 71912 71912 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:A6:B20 03_fastbaps 08_fastbaps E ESC_TA2839AA_AS No ESC_JA8872AA ST_Warwick 95 / ST_Pasteur 1 ERR2750893;ILLUMINA;Paired;300;ERX2763947 Human 2011 SEPEC Human Human Homo sapiens; Blood product 2011 NA NA NA Europe France NA NA NA NA NA NA Hopital Henri Mondor APHP Escherichia coli NA O1:H7 NA NA NA NA NA PRJEB28300 ERP110487 NA SAMEA4848523 ERS2668375 23/8/18 22/8/18 ESC_JA8872AA Assembled 142 233360 5139534 Escherichia coli / Shigella;98.86% 130 32542 4 ESC_TA2839AA_AS 72085 72084 72084 72084 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_TA7169AA_AS No ESC_KA0580AA NA SRR7828787;ILLUMINA;Paired;;SRX4679663 Human 2015 SEPEC Human Human Homo sapiens; blood; Age: 50; male; Blood 2015 NA NA NA Asia Singapore NA NA NA NA NA NA University of Queensland Escherichia coli NA NA NA NA NA NA NA PRJNA398288 SRP115500 NA SAMN10058919 SRS3773414 14/9/18 13/9/18 ESC_KA0580AA Assembled 129 175976 5312015 Escherichia coli / Shigella;90.35% 144 30879 4 ESC_TA7169AA_AS 72906 72906 72906 72906 72906 72906 72906 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/singapore.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:A8:B1 02_fastbaps 06_fastbaps D ESC_TA7147AA_AS No ESC_KA0602AA NA SRR7828815;ILLUMINA;Paired;;SRX4679635 Human 2015 SEPEC Human Human Homo sapiens; blood; Age: 73; female; Blood 2015 NA NA NA Asia Singapore NA NA NA NA NA NA University of Queensland Escherichia coli NA NA NA NA NA NA NA PRJNA398288 SRP115500 NA SAMN10058956 SRS3773386 14/9/18 13/9/18 ESC_KA0602AA Assembled 80 140311 5406231 Escherichia coli / Shigella;94.06% 238 44462 4 ESC_TA7147AA_AS 72804 72804 72804 72804 72804 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/singapore.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F107:B1 08_fastbaps 36_fastbaps C ESC_TA8195AA_AS No ESC_KA1176AA 572173 SRR7850220;ILLUMINA;Paired;;SRX4700979 Human 2018 NA Human Human human; Homo sapiens 2018 7 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN10075721 SRS3787306 17/9/18 17/9/18 ESC_KA1176AA Assembled 91 213452 5072195 Escherichia coli / Shigella;98.39% 114 26250 4 ESC_TA8195AA_AS 73806 73806 73806 73806 73806 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_TA8731AA_AS No ESC_KA1759AA D9011 SRR7879962;ILLUMINA;Paired;;SRX4718605 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Unresolved Unresolved Unresolved NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093646 SRS3803990 20/9/18 20/9/18 ESC_KA1759AA Assembled 205 232610 5060315 Escherichia coli / Shigella;100.0% 69 21731 4 ESC_TA8731AA_AS 74036 74036 74036 74036 74036 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F67:A6:B38 05_fastbaps 17_fastbaps A ESC_TA8730AA_AS No ESC_KA1760AA P6100 SRR7879961;ILLUMINA;Paired;;SRX4718604 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093635 SRS3803989 20/9/18 20/9/18 ESC_KA1760AA Assembled 134 360521 5108489 Escherichia coli / Shigella;100.0% 55 19787 4 ESC_TA8730AA_AS 74034 74034 74034 74034 74034 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_TA8724AA_AS No ESC_KA1769AA P6138 SRR7879952;ILLUMINA;Paired;;SRX4718595 Human 2013 UPEC Human Human Homo sapiens; urine 2013 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093638 SRS3803980 20/9/18 20/9/18 ESC_KA1769AA Assembled 182 179629 5304969 Escherichia coli / Shigella;100.0% 127 33081 4 ESC_TA8724AA_AS 74047 74047 74047 74047 74047 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_TA8717AA_AS No ESC_KA1773AA R9521 SRR7879948;ILLUMINA;Paired;;SRX4718591 Human 2014 UPEC Human Human Homo sapiens; urine 2014 NA NA NA North America United States Rhode Island NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093647 SRS3803976 20/9/18 20/9/18 ESC_KA1773AA Assembled 233 286738 5132084 Escherichia coli / Shigella;100.0% 75 24513 4 ESC_TA8717AA_AS 74050 74050 74050 74050 74050 74050 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_TA8716AA_AS No ESC_KA1775AA P6067 SRR7879946;ILLUMINA;Paired;;SRX4718589 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093632 SRS3803974 20/9/18 20/9/18 ESC_KA1775AA Assembled 187 282686 5323391 Escherichia coli / Shigella;100.0% 84 15696 4 ESC_TA8716AA_AS 74051 74051 74051 74051 73991 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH412 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_TA8713AA_AS No ESC_KA1781AA P6004 SRR7879940;ILLUMINA;Paired;;SRX4718583 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093621 SRS3803968 20/9/18 20/9/18 ESC_KA1781AA Assembled 224 342391 5123249 Escherichia coli / Shigella;100.0% 73 15688 4 ESC_TA8713AA_AS 74054 74054 74054 74054 73991 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH412 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_TA8708AA_AS No ESC_KA1791AA P6036 SRR7879930;ILLUMINA;Paired;;SRX4718573 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093625 SRS3803958 20/9/18 20/9/18 ESC_KA1791AA Assembled 283 173693 5080567 Escherichia coli / Shigella;100.0% 105 35505 4 ESC_TA8708AA_AS 74026 74026 74026 74026 74026 4921 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_TA8706AA_AS No ESC_KA1793AA P6050 SRR7879928;ILLUMINA;Paired;;SRX4718571 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093627 SRS3803957 20/9/18 20/9/18 ESC_KA1793AA Assembled 281 158207 5125933 Escherichia coli / Shigella;100.0% 109 44612 4 ESC_TA8706AA_AS 74027 74027 74027 74027 74027 1678 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_TA8700AA_AS No ESC_KA1799AA P6035 SRR7879922;ILLUMINA;Paired;;SRX4718565 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093624 SRS3803950 20/9/18 20/9/18 ESC_KA1799AA Assembled 308 216879 5299454 Escherichia coli / Shigella;100.0% 148 38088 4 ESC_TA8700AA_AS 74028 74028 74028 74028 74028 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_TA8698AA_AS No ESC_KA1801AA P1029 SRR7879920;ILLUMINA;Paired;;SRX4718563 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093619 SRS3803948 20/9/18 20/9/18 ESC_KA1801AA Assembled 324 226108 5131469 Escherichia coli / Shigella;97.43% 88 35631 4 ESC_TA8698AA_AS 73991 73991 73991 73991 73991 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH412 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_TA8696AA_AS No ESC_KA1803AA P6128 SRR7879918;ILLUMINA;Paired;;SRX4718561 Human 2013 UPEC Human Human Homo sapiens; urine 2013 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093562 SRS3803944 20/9/18 19/9/18 ESC_KA1803AA Assembled 260 304381 5135297 Escherichia coli / Shigella;100.0% 80 16840 4 ESC_TA8696AA_AS 73992 73992 73992 73992 73992 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_TA8695AA_AS No ESC_KA1804AA P6352 SRR7879917;ILLUMINA;Paired;;SRX4718560 Human 2015 UPEC Human Human Homo sapiens; urine 2015 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093568 SRS3803943 20/9/18 19/9/18 ESC_KA1804AA Assembled 222 282331 5235129 Escherichia coli / Shigella;100.0% 87 22617 4 ESC_TA8695AA_AS 73995 73995 73995 73995 73995 73995 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_TA8694AA_AS No ESC_KA1805AA P6086 SRR7879916;ILLUMINA;Paired;;SRX4718559 Human 2012 UPEC Human Human Homo sapiens; urine 2012 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093560 SRS3803942 20/9/18 19/9/18 ESC_KA1805AA Assembled 299 215707 5084531 Escherichia coli / Shigella;100.0% 96 26813 4 ESC_TA8694AA_AS 73996 73996 73996 73996 73996 73996 27328 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 02_fastbaps 04_fastbaps D ESC_TA8693AA_AS No ESC_KA1806AA P6350 SRR7879915;ILLUMINA;Paired;;SRX4718558 Human 2015 UPEC Human Human Homo sapiens; urine 2015 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093567 SRS3803941 20/9/18 19/9/18 ESC_KA1806AA Assembled 329 250487 5118053 Escherichia coli / Shigella;100.0% 66 28353 4 ESC_TA8693AA_AS 73994 73994 73994 73994 73994 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_TA8792AA_AS No ESC_KA1814AA P6232 SRR7879907;ILLUMINA;Paired;;SRX4718550 Human 2013 UPEC Human Human Homo sapiens; urine 2013 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093550 SRS3803933 20/9/18 19/9/18 ESC_KA1814AA Assembled 996 344195 5168254 Escherichia coli / Shigella;100.0% 111 12318 4 ESC_TA8792AA_AS 74072 74072 74072 74072 74072 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH234 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_TA8466AA_AS No ESC_KA1815AA P6158 SRR7879906;ILLUMINA;Paired;;SRX4718549 Human 2013 UPEC Human Human Homo sapiens; urine 2013 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093564 SRS3803932 20/9/18 19/9/18 ESC_KA1815AA Assembled 229 342601 5143183 Escherichia coli / Shigella;100.0% 71 22051 4 ESC_TA8466AA_AS 73969 73969 73969 73969 73969 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_TA8684AA_AS No ESC_KA1822AA P6136 SRR7879899;ILLUMINA;Paired;;SRX4718542 Human 2013 UPEC Human Human Homo sapiens; urine 2013 NA NA NA North America United States Pennsylvania NA NA NA NA NA The Broad Institute Escherichia coli NA NA NA NA NA NA NA PRJNA448593 SRP162179 NA SAMN10093563 SRS3803927 20/9/18 19/9/18 ESC_KA1822AA Assembled 224 268770 5245123 Escherichia coli / Shigella;98.62% 117 29546 4 ESC_TA8684AA_AS 74014 74014 74014 74014 74014 74014 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 Other fimH? O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_TA8927AA_AS No ESC_KA1949AA LL_509 traces-0qpKhqS;ILLUMINA;Paired;;NA Poultry 2018 NA Poultry Avian Broiler breeder 2018 NA NA NA Europe Croatia NA NA NA NA NA NA miki@sund.ku.dk Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 24/9/18 29/3/19 ESC_KA1949AA Assembled 54 204005 5057137 Escherichia coli / Shigella;100.0% 141 34039 4 ESC_TA8927AA_AS 73420 73420 41869 41869 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/croatia.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_TA9938AA_AS No ESC_KA2279AA PSU-1316 SRR7904963;ILLUMINA;Paired;500;SRX4741323 Environment 2004 Environmental Environment Water/River Waste Water 2004 NA NA NA North America United States New York NA New York NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN10132614 SRS3822654 27/9/18 26/9/18 ESC_KA2279AA Assembled 126 563793 5151809 Escherichia coli / Shigella;100.0% 63 7875 4 ESC_TA9938AA_AS 74289 74289 74289 74289 73991 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_UA1831AA_AS No ESC_KA4013AA CVM N17EC0236 SRR8095814;ILLUMINA;Paired;;SRX4922488 Bovine 2017 Other Livestock Bovine Ground Beef 2017 NA NA NA North America United States Kansas NA NA NA NA NA FDA-CVM Escherichia coli NA NA NA NA NA NA NA PRJNA292663 SRP161673 NA SAMN10221073 SRS3967811 23/10/18 23/10/18 ESC_KA4013AA Assembled 95 450902 5304670 Escherichia coli / Shigella;98.44% 84 11999 4 ESC_UA1831AA_AS 75468 75468 75468 75468 75468 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png Other https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_UA1505AA_AS No ESC_KA4339AA CVM N17EC1262 SRR8095544;ILLUMINA;Paired;;SRX4922162 NA 2017 NA Aquatic Animal NA Whole - cut in lab 2017 NA NA NA North America United States Iowa NA NA NA NA NA FDA-CVM Escherichia coli NA NA NA NA NA NA NA PRJNA292663 SRP161673 NA SAMN10221572 SRS3967486 23/10/18 23/10/18 ESC_KA4339AA Assembled 109 204081 5151343 Escherichia coli / Shigella;98.49% 98 41132 4 ESC_UA1505AA_AS 75157 75157 75157 57208 26607 26607 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_VA1064AA_AS No ESC_KA6678AA 644133 SRR8269012;ILLUMINA;Paired;;SRX5085872 Environment 2018 Environmental Environment ND/Others environmental 2018 11 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN10506009 SRS4098281 2/12/18 1/12/18 ESC_KA6678AA Assembled 157 357777 4974663 Escherichia coli / Shigella;100.0% 64 14847 4 ESC_VA1064AA_AS 78921 78921 12209 12209 12209 12209 12209 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH54 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 01_fastbaps 02_fastbaps J ESC_VA3679AA_AS No ESC_KA8130AA PSU-1742 SRR8297457;ILLUMINA;Paired;500;SRX5111962 Poultry 2018 RMAE Poultry Avian Poultry 2018 4 NA NA North America United States Georgia NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN10485807 SRS4120908 11/12/18 10/12/18 ESC_KA8130AA Assembled 96 204007 5315978 Escherichia coli / Shigella;98.92% 151 25918 4 ESC_VA3679AA_AS 80967 80967 80967 80967 80967 80967 80967 80967 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F34:B1 03_fastbaps 10_fastbaps E ESC_VA4677AA_AS No ESC_KA8413AA M091A SRR8360146;ILLUMINA;Paired;500;SRX5170838 Human 2017 Faecal Human Human Homo sapiens; stool 2017 7 NA NA Asia Sri Lanka NA NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA293225 SRP103093 NA SAMN10506437 SRS4178472 21/12/18 20/12/18 ESC_KA8413AA Assembled 52 183060 5170855 Escherichia coli / Shigella;100.0% 122 20738 4 ESC_VA4677AA_AS 81282 81282 81282 81282 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sri-lanka.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_VA5393AA_AS No ESC_KA8560AA FSIS11816749 SRR8375464;ILLUMINA;Paired;500;SRX5185510 Bovine 2018 NA Livestock Bovine animal-cattle-steer 2018 NA NA NA North America United States Colorado NA NA NA NA NA "United States Department of Agriculture, Food Safety and Inspection Service" Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN10656498 SRS4192133 1/1/19 27/12/18 ESC_KA8560AA Assembled 103 271711 5334492 Escherichia coli / Shigella;97.41% 105 19461 4 ESC_VA5393AA_AS 81463 81463 81463 81463 81463 81463 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_VA7372AA_AS No ESC_KA9556AA FSIS11917128 SRR8456429;ILLUMINA;Paired;500;SRX5263083 Bovine 2018 NA Livestock Bovine animal-cattle-steer 2018 NA NA NA North America United States Arizona NA NA NA NA NA "United States Department of Agriculture, Food Safety and Inspection Service" Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN10774476 SRS4263912 23/1/19 18/1/19 ESC_KA9556AA Assembled 127 216051 5338036 Escherichia coli / Shigella;92.05% 119 31433 4 ESC_VA7372AA_AS 83359 83359 83359 83359 83359 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_WA0222AA_AS No ESC_LA1140AA M14W138421 SRR8505951;ILLUMINA;Paired;;SRX5309791 Human 2014 UPEC Human Human Homo sapiens; urine 2014 NA NA NA Europe United Kingdom NA NA NA NA 52.943219 -1.184984 University of Birmingham Escherichia coli NA NA NA NA NA NA NA PRJNA517788 SRP182888 NA SAMN10845025 SRS4307235 30/1/19 30/1/19 ESC_LA1140AA Assembled 50 286696 5318264 Escherichia coli / Shigella;93.82% 141 13291 4 ESC_WA0222AA_AS 84294 84294 84294 84294 84294 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_WA0219AA_AS No ESC_LA1143AA F14W131166-2 SRR8505954;ILLUMINA;Paired;;SRX5309788 Human 2014 UPEC Human Human Homo sapiens; urine 2014 NA NA NA Europe United Kingdom NA NA NA NA 52.943219 -1.184984 University of Birmingham Escherichia coli NA NA NA NA NA NA NA PRJNA517788 SRP182888 NA SAMN10845024 SRS4307232 30/1/19 30/1/19 ESC_LA1143AA Assembled 56 189653 5291532 Escherichia coli / Shigella;91.82% 160 23900 4 ESC_WA0219AA_AS 84297 84297 84297 84297 84297 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B10 06_fastbaps 22_fastbaps B ESC_WA1915AA_AS No ESC_LA1549AA M035X SRR8535144;ILLUMINA;Paired;500;SRX5337633 Human 2017 Faecal Human Human Homo sapiens; stool 2017 7 NA NA Asia Sri Lanka NA NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA293225 SRP103093 NA SAMN10878257 SRS4330856 6/2/19 5/2/19 ESC_LA1549AA Assembled 63 204008 5215620 Escherichia coli / Shigella;98.51% 115 22469 4 ESC_WA1915AA_AS 85186 85186 85186 85186 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sri-lanka.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_WA6979AA_AS No ESC_LA3754AA 635 SRR7304367;ILLUMINA;Paired;;SRX4206769 Human 1998 Faecal Human Human Homo sapiens; feces 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405725 SRS3413495 11/2/19 18/9/18 ESC_LA3754AA Assembled 44 341263 5043213 Escherichia coli / Shigella;97.5% 90 13689 4 ESC_WA6979AA_AS 87248 87248 87248 87248 87248 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_WA6977AA_AS No ESC_LA3756AA 1072 SRR7304369;ILLUMINA;Paired;;SRX4206767 Human 1999 Faecal Human Human Homo sapiens; feces 1999 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405719 SRS3413493 11/2/19 18/9/18 ESC_LA3756AA Assembled 84 310327 5082377 Escherichia coli / Shigella;100.0% 84 10485 4 ESC_WA6977AA_AS 89933 89933 89933 89933 89933 89933 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_WA6976AA_AS No ESC_LA3757AA 233 SRR7304370;ILLUMINA;Paired;;SRX4206766 Human 1998 Faecal Human Human Homo sapiens; feces 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405720 SRS3413492 11/2/19 18/9/18 ESC_LA3757AA Assembled 107 236087 5085582 Escherichia coli / Shigella;98.15% 74 20948 4 ESC_WA6976AA_AS 89927 89927 89927 89927 89927 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 06_fastbaps 22_fastbaps B ESC_WA6975AA_AS No ESC_LA3758AA 2H18 SRR7304371;ILLUMINA;Paired;;SRX4206765 Human 1986 SEPEC Human Human Homo sapiens; blood 1986 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405717 SRS3413491 11/2/19 18/9/18 ESC_LA3758AA Assembled 29 281583 5131129 Escherichia coli / Shigella;100.0% 62 16207 4 ESC_WA6975AA_AS 30927 30927 30927 30927 10747 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_YA6556AA_AS No ESC_LA3760AA 417 SRR7304373;ILLUMINA;Paired;;SRX4206763 Human 1998 Faecal Human Human Homo sapiens; feces 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405723 SRS3413489 11/2/19 18/9/18 ESC_LA3760AA Assembled 198 359922 5038659 Escherichia coli / Shigella;100.0% 67 9277 4 ESC_YA6556AA_AS 93346 93346 93346 93346 93346 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_WA6972AA_AS No ESC_LA3761AA 474 SRR7304374;ILLUMINA;Paired;;SRX4206762 Human 1998 Faecal Human Human Homo sapiens; feces 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405724 SRS3413486 11/2/19 18/9/18 ESC_LA3761AA Assembled 33 294085 5130318 Escherichia coli / Shigella;100.0% 109 21765 4 ESC_WA6972AA_AS 87246 87246 87246 87246 87246 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F73:B1 05_fastbaps 18_fastbaps A ESC_WA6971AA_AS No ESC_LA3762AA 267 SRR7304375;ILLUMINA;Paired;;SRX4206761 Human 1998 Faecal Human Human Homo sapiens; feces 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405721 SRS3413487 11/2/19 18/9/18 ESC_LA3762AA Assembled 100 294421 5082913 Escherichia coli / Shigella;100.0% 118 11462 4 ESC_WA6971AA_AS 87252 87252 87252 87252 87252 87252 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 18_fastbaps A ESC_WA6970AA_AS No ESC_LA3763AA 275 SRR7304376;ILLUMINA;Paired;;SRX4206760 Human 1998 Faecal Human Human Homo sapiens; feces 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405722 SRS3413541 11/2/19 18/9/18 ESC_LA3763AA Assembled 56 203912 5111887 Escherichia coli / Shigella;100.0% 78 9426 4 ESC_WA6970AA_AS 87250 87250 87250 87250 87250 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_WA6933AA_AS No ESC_LA3800AA 2H25 SRR7304413;ILLUMINA;Paired;;SRX4206723 Human 1987 SEPEC Human Human Homo sapiens; blood 1987 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405716 SRS3413448 11/2/19 18/9/18 ESC_LA3800AA Assembled 81 268908 5135957 Escherichia coli / Shigella;98.46% 84 24578 4 ESC_WA6933AA_AS 30929 30929 30929 30929 30929 22501 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_WA6932AA_AS No ESC_LA3801AA PM6 SRR7304414;ILLUMINA;Paired;;SRX4206722 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405715 SRS3413447 11/2/19 18/9/18 ESC_LA3801AA Assembled 90 359926 5084994 Escherichia coli / Shigella;100.0% 69 10900 4 ESC_WA6932AA_AS 87171 30979 30979 30979 30979 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_WA6929AA_AS No ESC_LA3804AA H3 SRR7304417;ILLUMINA;Paired;;SRX4206719 Human 1984 SEPEC Human Human Homo sapiens; blood 1984 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405708 SRS3413444 11/2/19 18/9/18 ESC_LA3804AA Assembled 62 412079 5051624 Escherichia coli / Shigella;100.0% 74 11838 4 ESC_WA6929AA_AS 87174 87174 30941 30941 30941 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH250 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_WA6928AA_AS No ESC_LA3805AA H16 SRR7304418;ILLUMINA;Paired;;SRX4206718 Human 1984 SEPEC Human Human Homo sapiens; blood 1984 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405707 SRS3413443 11/2/19 18/9/18 ESC_LA3805AA Assembled 63 360147 5052066 Escherichia coli / Shigella;100.0% 74 12368 4 ESC_WA6928AA_AS 30941 30941 30941 30941 30941 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH250 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_WA6927AA_AS No ESC_LA3806AA H25 SRR7304419;ILLUMINA;Paired;;SRX4206717 Human 1984 SEPEC Human Human Homo sapiens; blood 1984 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405710 SRS3413442 11/2/19 18/9/18 ESC_LA3806AA Assembled 38 281728 5111179 Escherichia coli / Shigella;100.0% 59 8750 4 ESC_WA6927AA_AS 87175 87175 30955 30955 30955 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH252 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_WA6926AA_AS No ESC_LA3807AA H15 SRR7304420;ILLUMINA;Paired;;SRX4206716 Human 1984 SEPEC Human Human Homo sapiens; blood 1984 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405709 SRS3413441 11/2/19 18/9/18 ESC_LA3807AA Assembled 66 279797 5174352 Escherichia coli / Shigella;100.0% 82 11376 4 ESC_WA6926AA_AS 30949 30949 30949 30949 30949 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_WA6925AA_AS No ESC_LA3808AA H38 SRR7304421;ILLUMINA;Paired;;SRX4206715 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405712 SRS3413440 11/2/19 18/9/18 ESC_LA3808AA Assembled 45 281762 5087921 Escherichia coli / Shigella;100.0% 79 15491 4 ESC_WA6925AA_AS 30866 30866 30866 30866 29665 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_WA6924AA_AS No ESC_LA3809AA H35 SRR7304422;ILLUMINA;Paired;;SRX4206714 Human 1985 SEPEC Human Human Homo sapiens; blood 1985 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405711 SRS3413439 11/2/19 18/9/18 ESC_LA3809AA Assembled 79 359974 5022977 Escherichia coli / Shigella;100.0% 72 9897 4 ESC_WA6924AA_AS 30867 30867 30867 30867 1678 1678 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_WA6923AA_AS No ESC_LA3810AA V23 SRR7304423;ILLUMINA;Paired;;SRX4206713 Human 1984 SEPEC Human Human Homo sapiens; blood 1984 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405714 SRS3413438 11/2/19 18/9/18 ESC_LA3810AA Assembled 65 253445 5331459 Escherichia coli / Shigella;93.54% 68 11848 4 ESC_WA6923AA_AS 30904 30904 30904 30904 30904 30904 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 05_fastbaps 18_fastbaps A ESC_WA6922AA_AS No ESC_LA3811AA V15 SRR7304424;ILLUMINA;Paired;;SRX4206712 Human 1981 SEPEC Human Human Homo sapiens; blood 1981 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405713 SRS3413490 11/2/19 18/9/18 ESC_LA3811AA Assembled 60 264028 5070415 Escherichia coli / Shigella;100.0% 79 11052 4 ESC_WA6922AA_AS 30905 30905 30905 30905 30905 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_WA6888AA_AS No ESC_LA3845AA 455 SRR7304458;ILLUMINA;Paired;;SRX4206678 Human 2000 Faecal Human Human Homo sapiens; feces 2000 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405737 SRS3413404 11/2/19 18/9/18 ESC_LA3845AA Assembled 26 281817 5087172 Escherichia coli / Shigella;100.0% 71 23467 4 ESC_WA6888AA_AS 87097 87097 87097 87097 87097 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B2 05_fastbaps 18_fastbaps A ESC_WA6887AA_AS No ESC_LA3846AA 492 SRR7304459;ILLUMINA;Paired;;SRX4206677 Human 2000 Faecal Human Human Homo sapiens; feces 2000 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405738 SRS3413403 11/2/19 18/9/18 ESC_LA3846AA Assembled 72 139297 5200245 Escherichia coli / Shigella;96.34% 146 21945 4 ESC_WA6887AA_AS 87098 87098 87098 87098 87098 87098 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_WA6886AA_AS No ESC_LA3847AA 1279 SRR7304460;ILLUMINA;Paired;;SRX4206676 Human 1998 SEPEC Human Human Homo sapiens; blood 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405739 SRS3413401 11/2/19 18/9/18 ESC_LA3847AA Assembled 64 234887 5127120 Escherichia coli / Shigella;93.83% 127 33306 4 ESC_WA6886AA_AS 87099 87099 87099 87099 87099 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_WA6860AA_AS No ESC_LA3873AA 391 SRR7304486;ILLUMINA;Paired;;SRX4206650 Human 2000 Faecal Human Human Homo sapiens; feces 2000 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405736 SRS3413377 11/2/19 18/9/18 ESC_LA3873AA Assembled 116 171591 5157057 Escherichia coli / Shigella;96.41% 119 10942 4 ESC_WA6860AA_AS 88027 88027 88027 88027 41949 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_WA6859AA_AS No ESC_LA3874AA 384 SRR7304487;ILLUMINA;Paired;;SRX4206649 Human 2000 Faecal Human Human Homo sapiens; feces 2000 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405735 SRS3413376 11/2/19 18/9/18 ESC_LA3874AA Assembled 60 282097 5207992 Escherichia coli / Shigella;95.75% 93 26472 4 ESC_WA6859AA_AS 88000 88000 88000 88000 88000 66821 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_WA6857AA_AS No ESC_LA3876AA 237 SRR7304489;ILLUMINA;Paired;;SRX4206647 Human 1999 UPEC Human Human Homo sapiens; urine 1999 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405730 SRS3413374 11/2/19 18/9/18 ESC_LA3876AA Assembled 23 260624 5128088 Escherichia coli / Shigella;100.0% 82 19317 4 ESC_WA6857AA_AS 88004 88004 88004 88004 88004 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_WA6856AA_AS No ESC_LA3877AA 20 SRR7304490;ILLUMINA;Paired;;SRX4206646 Human 1998 UPEC Human Human Homo sapiens; urine 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405729 SRS3413373 11/2/19 18/9/18 ESC_LA3877AA Assembled 70 267667 5125738 Escherichia coli / Shigella;100.0% 83 11157 4 ESC_WA6856AA_AS 88008 88008 88008 88008 88008 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_WA6855AA_AS No ESC_LA3878AA 142 SRR7304491;ILLUMINA;Paired;;SRX4206645 Human 1998 UPEC Human Human Homo sapiens; urine 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405728 SRS3413372 11/2/19 18/9/18 ESC_LA3878AA Assembled 41 240500 5187057 Escherichia coli / Shigella;97.3% 113 29814 4 ESC_WA6855AA_AS 87115 87115 87115 87115 87115 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_WA6854AA_AS No ESC_LA3879AA 118 SRR7304492;ILLUMINA;Paired;;SRX4206644 Human 1998 UPEC Human Human Homo sapiens; urine 1998 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405727 SRS3413371 11/2/19 18/9/18 ESC_LA3879AA Assembled 66 264358 5192311 Escherichia coli / Shigella;100.0% 109 20724 4 ESC_WA6854AA_AS 87116 87116 87116 87116 87116 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_WA6853AA_AS No ESC_LA3880AA 373 SRR7304493;ILLUMINA;Paired;;SRX4206643 Human 2000 Faecal Human Human Homo sapiens; feces 2000 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405734 SRS3413370 11/2/19 18/9/18 ESC_LA3880AA Assembled 103 412082 5093552 Escherichia coli / Shigella;100.0% 76 10739 4 ESC_WA6853AA_AS 87019 87019 87019 87019 87019 4921 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_WA6852AA_AS No ESC_LA3881AA 371 SRR7304494;ILLUMINA;Paired;;SRX4206642 Human 2000 Faecal Human Human Homo sapiens; feces 2000 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405733 SRS3413369 11/2/19 18/9/18 ESC_LA3881AA Assembled 77 293949 5092648 Escherichia coli / Shigella;100.0% 87 11108 4 ESC_WA6852AA_AS 87020 87020 87020 87020 87020 66821 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 17_fastbaps A ESC_WA6851AA_AS No ESC_LA3882AA 342 SRR7304495;ILLUMINA;Paired;;SRX4206641 Human 1999 Faecal Human Human Homo sapiens; feces 1999 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405732 SRS3413367 11/2/19 18/9/18 ESC_LA3882AA Assembled 111 203931 5097139 Escherichia coli / Shigella;100.0% 94 21203 4 ESC_WA6851AA_AS 87117 87117 87117 87117 87117 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_WA6850AA_AS No ESC_LA3883AA 305 SRR7304496;ILLUMINA;Paired;;SRX4206640 Human 1999 Faecal Human Human Homo sapiens; feces 1999 NA NA NA North America United States NA NA NA NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA475142 SRP150422 NA SAMN09405731 SRS3413366 11/2/19 18/9/18 ESC_LA3883AA Assembled 73 281201 5148626 Escherichia coli / Shigella;100.0% 93 9723 4 ESC_WA6850AA_AS 87118 87118 87118 87118 87118 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_WA2673AA_AS No ESC_LA8556AA E37 SRR4953928;ILLUMINA;Paired;;SRX2328846 Poultry 2015 APEC Poultry Avian Broiler; Liver 2015 10 NA NA Europe Denmark NA NA NA NA NA NA "Technical University of Denmark, National Veterinary Institute" Escherichia coli NA NA NA NA NA NA NA PRJNA352460 SRP092633 NA SAMN05981742 SRS1784586 11/2/19 10/11/16 ESC_LA8556AA Assembled 102 232594 5120814 Escherichia coli / Shigella;97.08% 153 28442 4 ESC_WA2673AA_AS 84933 84933 84933 84933 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Denmark.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_WA2664AA_AS No ESC_LA8565AA E43 SRR4953919;ILLUMINA;Paired;;SRX2328837 Poultry 2015 ExPEC Companion Animal NA Parent; Bone marrow 2015 5 NA NA Europe Finland NA NA NA NA NA NA "Technical University of Denmark, National Veterinary Institute" Escherichia coli NA NA NA NA NA NA NA PRJNA352460 SRP092633 NA SAMN05981748 SRS1784577 11/2/19 10/11/16 ESC_LA8565AA Assembled 75 213321 5166742 Escherichia coli / Shigella;97.06% 100 19468 4 ESC_WA2664AA_AS 84914 84914 84914 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/finland.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_WA2657AA_AS No ESC_LA8572AA E28 SRR4953912;ILLUMINA;Paired;;SRX2328830 NA 2015 ExPEC Livestock NA Parent; Spleen 2015 9 NA NA Europe Norway NA NA NA NA NA NA "Technical University of Denmark, National Veterinary Institute" Escherichia coli NA NA NA NA NA NA NA PRJNA352460 SRP092633 NA SAMN05981733 SRS1784570 11/2/19 10/11/16 ESC_LA8572AA Assembled 55 323009 5134600 Escherichia coli / Shigella;87.5% 95 12803 4 ESC_WA2657AA_AS 84858 84858 84858 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/norway.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_WA2654AA_AS No ESC_LA8575AA E41 SRR4953909;ILLUMINA;Paired;;SRX2328827 Poultry 2015 ExPEC Companion Animal NA Parent; Bone marrow 2015 6 NA NA Europe Finland NA NA NA NA NA NA "Technical University of Denmark, National Veterinary Institute" Escherichia coli NA NA NA NA NA NA NA PRJNA352460 SRP092633 NA SAMN05981746 SRS1784567 11/2/19 10/11/16 ESC_LA8575AA Assembled 91 268691 5155566 Escherichia coli / Shigella;98.49% 90 19306 4 ESC_WA2654AA_AS 84894 84894 31211 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/finland.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_WA2637AA_AS No ESC_LA8592AA E42 SRR4953892;ILLUMINA;Paired;;SRX2328810 Poultry 2015 ExPEC Companion Animal NA Parent; Bone marrow 2015 4 NA NA Europe Finland NA NA NA NA NA NA "Technical University of Denmark, National Veterinary Institute" Escherichia coli NA NA NA NA NA NA NA PRJNA352460 SRP092633 NA SAMN05981747 SRS1784550 11/2/19 10/11/16 ESC_LA8592AA Assembled 47 95282 5152307 Escherichia coli / Shigella;99.13% 162 34703 4 ESC_WA2637AA_AS 84869 84869 31211 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/finland.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_WA9611AA_AS No ESC_LA9457AA PSU-1025 SRR8590839;ILLUMINA;Paired;500;SRX5391092 Poultry 1982 RMAE Poultry Avian "Chicken, (Avian)" 1982 NA NA NA North America United States Delaware NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN09060714 SRS4379031 19/2/19 19/2/19 ESC_LA9457AA Assembled 57 179443 5266981 Escherichia coli / Shigella;99.03% 145 17578 4 ESC_WA9611AA_AS 89447 89447 89447 89447 89447 89447 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_WA9986AA_AS No ESC_LA9608AA IHE3034F SRR8476845;ILLUMINA;Paired;;SRX5282364 Human 1976 ExPEC Human Human Homo sapiens; meningitis 1976 NA NA NA Europe Finland NA NA NA NA NA NA MIMS Escherichia coli NA NA NA NA NA NA NA PRJNA516626 SRP181575 NA SAMN10792171 SRS4282109 24/2/19 20/2/19 ESC_LA9608AA Assembled 51 199926 5139685 Escherichia coli / Shigella;100.0% 90 17202 4 ESC_WA9986AA_AS 89611 89611 89611 89611 1661 1661 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/finland.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 06_fastbaps 24_fastbaps B ESC_XA0482AA_AS No ESC_LA9784AA PSU-0419 SRR8643897;ILLUMINA;Paired;500;SRX5442141 Other 2002 Other Environment NA "Food, Lettuce - Romaine" 2002 NA NA NA North America United States California NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN08367987 SRS4419307 27/2/19 27/2/19 ESC_LA9784AA Assembled 61 282332 5184615 Escherichia coli / Shigella;100.0% 61 16696 4 ESC_XA0482AA_AS 89917 89917 89917 89917 89917 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png Other https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/other.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_XA1408AA_AS No ESC_MA0133AA 171 SRR8533847;ILLUMINA;Paired;;SRX5336446 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875459 SRS4329722 3/3/19 28/2/19 ESC_MA0133AA Assembled 160 342435 4974608 Escherichia coli / Shigella;100.0% 87 25531 4 ESC_XA1408AA_AS 90533 90533 90533 90533 90533 8533 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B1 02_fastbaps 06_fastbaps D ESC_XA1403AA_AS No ESC_MA0138AA 178 SRR8533852;ILLUMINA;Paired;;SRX5336441 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875466 SRS4329717 3/3/19 28/2/19 ESC_MA0138AA Assembled 131 173879 5135171 Escherichia coli / Shigella;100.0% 154 40845 4 ESC_XA1403AA_AS 90540 90540 90540 90540 90540 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_XA1397AA_AS No ESC_MA0144AA 107 SRR8533858;ILLUMINA;Paired;;SRX5336435 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875395 SRS4329711 3/3/19 28/2/19 ESC_MA0144AA Assembled 101 174845 5058827 Escherichia coli / Shigella;98.68% 123 40335 4 ESC_XA1397AA_AS 90513 90513 90513 90513 90513 9859 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 1 0 1 0 0 1 F24:B1 03_fastbaps 09_fastbaps E ESC_XA1393AA_AS No ESC_MA0148AA 103 SRR8533862;ILLUMINA;Paired;;SRX5336431 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875391 SRS4329708 3/3/19 28/2/19 ESC_MA0148AA Assembled 173 194013 5284763 Escherichia coli / Shigella;95.54% 104 18927 4 ESC_XA1393AA_AS 90532 90532 90532 1679 1679 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F107:B1 08_fastbaps 36_fastbaps C ESC_XA1384AA_AS No ESC_MA0157AA 24 SRR8533871;ILLUMINA;Paired;;SRX5336422 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875312 SRS4329698 3/3/19 28/2/19 ESC_MA0157AA Assembled 121 240838 5177561 Escherichia coli / Shigella;97.65% 114 19492 4 ESC_XA1384AA_AS 90531 90531 90531 90531 90531 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_XA1381AA_AS No ESC_MA0160AA 27 SRR8533874;ILLUMINA;Paired;;SRX5336419 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875315 SRS4329694 3/3/19 28/2/19 ESC_MA0160AA Assembled 111 194013 5286967 Escherichia coli / Shigella;98.25% 93 27318 4 ESC_XA1381AA_AS 90527 90527 90527 90527 90527 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 08_fastbaps 35_fastbaps C ESC_XA1375AA_AS No ESC_MA0166AA 352 SRR8533880;ILLUMINA;Paired;;SRX5336413 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875639 SRS4329689 3/3/19 28/2/19 ESC_MA0166AA Assembled 134 282234 5163965 Escherichia coli / Shigella;100.0% 85 23454 4 ESC_XA1375AA_AS 90496 90496 90496 90496 90496 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1360AA_AS No ESC_MA0181AA 219 SRR8533895;ILLUMINA;Paired;;SRX5336398 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875507 SRS4329674 3/3/19 28/2/19 ESC_MA0181AA Assembled 150 173451 5158152 Escherichia coli / Shigella;100.0% 161 20507 4 ESC_XA1360AA_AS 90476 90476 90476 90476 90476 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1359AA_AS No ESC_MA0182AA 220 SRR8533896;ILLUMINA;Paired;;SRX5336397 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875508 SRS4329673 3/3/19 28/2/19 ESC_MA0182AA Assembled 161 268772 4991184 Escherichia coli / Shigella;100.0% 159 38542 4 ESC_XA1359AA_AS 90471 90471 90257 90257 90257 45091 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 03_fastbaps 09_fastbaps E ESC_XA1350AA_AS No ESC_MA0191AA 326 SRR8533905;ILLUMINA;Paired;;SRX5336388 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875613 SRS4329664 3/3/19 28/2/19 ESC_MA0191AA Assembled 111 408317 5238957 Escherichia coli / Shigella;100.0% 88 30752 4 ESC_XA1350AA_AS 90475 90475 90475 90475 11922 11922 11922 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH15 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F24:B1 07_fastbaps 30_fastbaps H ESC_XA1348AA_AS No ESC_MA0193AA 328 SRR8533907;ILLUMINA;Paired;;SRX5336386 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875615 SRS4329662 3/3/19 28/2/19 ESC_MA0193AA Assembled 83 174110 5175264 Escherichia coli / Shigella;98.69% 127 23067 4 ESC_XA1348AA_AS 90478 90478 90478 90478 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_XA4718AA_AS No ESC_MA0211AA 148 SRR8533512;ILLUMINA;Paired;;SRX5336368 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875436 SRS4329645 3/3/19 28/2/19 ESC_MA0211AA Assembled 178 177017 5152413 Escherichia coli / Shigella;98.86% 135 38026 4 ESC_XA4718AA_AS 90804 90804 90804 90804 90804 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_XA1321AA_AS No ESC_MA0220AA 63 SRR8533521;ILLUMINA;Paired;;SRX5336359 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875351 SRS4329635 3/3/19 28/2/19 ESC_MA0220AA Assembled 107 197765 5100015 Escherichia coli / Shigella;100.0% 91 28216 4 ESC_XA1321AA_AS 90448 90448 90448 90448 90448 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1313AA_AS No ESC_MA0228AA 393 SRR8533529;ILLUMINA;Paired;;SRX5336351 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875680 SRS4329627 3/3/19 28/2/19 ESC_MA0228AA Assembled 57 282675 5197412 Escherichia coli / Shigella;100.0% 127 14824 4 ESC_XA1313AA_AS 90420 90420 90420 90420 90420 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F35:B10 05_fastbaps 18_fastbaps A ESC_XA1311AA_AS No ESC_MA0230AA 395 SRR8533531;ILLUMINA;Paired;;SRX5336349 Human 2015 SEPEC Human Human Homo sapiens; bloodstream isolates 2015 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875682 SRS4329625 3/3/19 28/2/19 ESC_MA0230AA Assembled 80 204008 5195811 Escherichia coli / Shigella;100.0% 113 29439 4 ESC_XA1311AA_AS 90421 90421 90421 90421 90421 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:A1:B1 03_fastbaps 11_fastbaps E ESC_XA1294AA_AS No ESC_MA0247AA 245 SRR8533548;ILLUMINA;Paired;;SRX5336332 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875533 SRS4329608 3/3/19 28/2/19 ESC_MA0247AA Assembled 97 356494 5069652 Escherichia coli / Shigella;100.0% 61 7587 4 ESC_XA1294AA_AS 90434 90434 90434 90434 90434 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1293AA_AS No ESC_MA0248AA 300 SRR8533549;ILLUMINA;Paired;;SRX5336331 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875587 SRS4329607 3/3/19 28/2/19 ESC_MA0248AA Assembled 160 172009 5043898 Escherichia coli / Shigella;100.0% 79 24996 4 ESC_XA1293AA_AS 90405 90405 90405 90405 90139 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1274AA_AS No ESC_MA0267AA 119 SRR8533568;ILLUMINA;Paired;;SRX5336312 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875407 SRS4329588 3/3/19 28/2/19 ESC_MA0267AA Assembled 207 281926 5119563 Escherichia coli / Shigella;100.0% 69 21760 4 ESC_XA1274AA_AS 90411 90411 90411 90411 90411 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1273AA_AS No ESC_MA0268AA 16 SRR8533569;ILLUMINA;Paired;;SRX5336311 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875304 SRS4329587 3/3/19 28/2/19 ESC_MA0268AA Assembled 110 199874 5184827 Escherichia coli / Shigella;100.0% 127 31350 4 ESC_XA1273AA_AS 90445 90445 11950 11950 10470 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_XA1253AA_AS No ESC_MA0288AA 341 SRR8533589;ILLUMINA;Paired;;SRX5336291 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875628 SRS4329567 3/3/19 28/2/19 ESC_MA0288AA Assembled 105 346264 5077045 Escherichia coli / Shigella;100.0% 64 8036 4 ESC_XA1253AA_AS 90428 90428 90428 90428 90428 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1246AA_AS No ESC_MA0295AA 338 SRR8533596;ILLUMINA;Paired;;SRX5336284 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875625 SRS4329560 3/3/19 28/2/19 ESC_MA0295AA Assembled 86 412095 5030141 Escherichia coli / Shigella;100.0% 59 8451 4 ESC_XA1246AA_AS 90417 90417 90417 90417 90417 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1243AA_AS No ESC_MA0298AA 364 SRR8533599;ILLUMINA;Paired;;SRX5336281 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875651 SRS4329558 3/3/19 28/2/19 ESC_MA0298AA Assembled 116 356498 5089804 Escherichia coli / Shigella;93.93% 69 20380 4 ESC_XA1243AA_AS 90391 90391 90391 90391 90391 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1239AA_AS No ESC_MA0302AA 158 SRR8533603;ILLUMINA;Paired;;SRX5336277 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875446 SRS4329554 3/3/19 28/2/19 ESC_MA0302AA Assembled 272 216667 5095669 Escherichia coli / Shigella;97.37% 76 35130 4 ESC_XA1239AA_AS 90465 90373 90373 90373 90373 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1224AA_AS No ESC_MA0317AA 159 SRR8533618;ILLUMINA;Paired;;SRX5336262 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875447 SRS4329538 3/3/19 28/2/19 ESC_MA0317AA Assembled 244 285643 5099852 Escherichia coli / Shigella;97.23% 74 31401 4 ESC_XA1224AA_AS 90373 90373 90373 90373 90373 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1223AA_AS No ESC_MA0318AA 60 SRR8533619;ILLUMINA;Paired;;SRX5336261 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875348 SRS4329537 3/3/19 28/2/19 ESC_MA0318AA Assembled 99 171830 5168938 Escherichia coli / Shigella;97.62% 87 17538 4 ESC_XA1223AA_AS 90363 90363 90363 90363 90363 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1222AA_AS No ESC_MA0319AA 59 SRR8533620;ILLUMINA;Paired;;SRX5336260 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875347 SRS4329536 3/3/19 28/2/19 ESC_MA0319AA Assembled 93 268745 5161017 Escherichia coli / Shigella;100.0% 121 30222 4 ESC_XA1222AA_AS 90370 90370 90370 90370 10696 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 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0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1186AA_AS No ESC_MA0355AA 96 SRR8533656;ILLUMINA;Paired;;SRX5336224 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875384 SRS4329500 3/3/19 28/2/19 ESC_MA0355AA Assembled 187 268775 5123995 Escherichia coli / Shigella;100.0% 73 11006 4 ESC_XA1186AA_AS 90326 90326 90326 90326 90326 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_XA1162AA_AS No ESC_MA0379AA 291 SRR8533680;ILLUMINA;Paired;;SRX5336200 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875578 SRS4329476 3/3/19 28/2/19 ESC_MA0379AA Assembled 82 282304 5107093 Escherichia coli / Shigella;100.0% 94 13332 4 ESC_XA1162AA_AS 90317 90317 90317 90317 90317 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1159AA_AS No ESC_MA0382AA 122 SRR8533683;ILLUMINA;Paired;;SRX5336197 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875410 SRS4329474 3/3/19 28/2/19 ESC_MA0382AA Assembled 106 135913 4982141 Escherichia coli / Shigella;97.69% 129 38560 4 ESC_XA1159AA_AS 90313 90313 90313 90313 90313 90313 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_XA1150AA_AS No ESC_MA0391AA 237 SRR8533692;ILLUMINA;Paired;;SRX5336188 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875525 SRS4329464 3/3/19 28/2/19 ESC_MA0391AA Assembled 92 360306 5036147 Escherichia coli / Shigella;100.0% 62 10700 4 ESC_XA1150AA_AS 90314 90314 90314 90314 90314 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1146AA_AS No ESC_MA0395AA 409 SRR8533696;ILLUMINA;Paired;;SRX5336184 Human 2015 SEPEC Human Human Homo sapiens; bloodstream isolates 2015 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875696 SRS4329460 3/3/19 28/2/19 ESC_MA0395AA Assembled 113 282204 5154866 Escherichia coli / Shigella;100.0% 90 14207 4 ESC_XA1146AA_AS 90282 90282 90282 90282 90282 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_XA1141AA_AS No ESC_MA0400AA 307 SRR8533701;ILLUMINA;Paired;;SRX5336179 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875594 SRS4329456 3/3/19 28/2/19 ESC_MA0400AA Assembled 37 140088 5222439 Escherichia coli / Shigella;97.37% 102 45798 4 ESC_XA1141AA_AS 90250 90250 90250 90250 90250 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F107:B1 08_fastbaps 36_fastbaps C ESC_XA1135AA_AS No ESC_MA0406AA 311 SRR8533707;ILLUMINA;Paired;;SRX5336173 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875598 SRS4329450 3/3/19 28/2/19 ESC_MA0406AA Assembled 207 204033 4994066 Escherichia coli / Shigella;100.0% 116 27434 4 ESC_XA1135AA_AS 90257 90257 90257 90257 90257 45091 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 03_fastbaps 09_fastbaps E ESC_XA1127AA_AS No ESC_MA0414AA 166 SRR8533715;ILLUMINA;Paired;;SRX5336165 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875454 SRS4329442 3/3/19 28/2/19 ESC_MA0414AA Assembled 194 219518 5097527 Escherichia coli / Shigella;100.0% 87 24917 4 ESC_XA1127AA_AS 90266 90266 90266 90266 90266 90266 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH412 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B10 05_fastbaps 17_fastbaps A ESC_XA1126AA_AS No ESC_MA0415AA 169 SRR8533716;ILLUMINA;Paired;;SRX5336164 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875457 SRS4329441 3/3/19 28/2/19 ESC_MA0415AA Assembled 131 264476 4996158 Escherichia coli / Shigella;100.0% 99 39530 4 ESC_XA1126AA_AS 90260 90260 90260 90260 90260 90260 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_XA1115AA_AS No ESC_MA0426AA 45 SRR8533727;ILLUMINA;Paired;;SRX5336153 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875333 SRS4329430 3/3/19 28/2/19 ESC_MA0426AA Assembled 102 161070 5077773 Escherichia coli / Shigella;100.0% 112 36127 4 ESC_XA1115AA_AS 90228 90228 90228 90228 90228 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 03_fastbaps 11_fastbaps E ESC_XA1114AA_AS No ESC_MA0427AA 46 SRR8533728;ILLUMINA;Paired;;SRX5336152 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875334 SRS4329429 3/3/19 28/2/19 ESC_MA0427AA Assembled 134 238362 5026671 Escherichia coli / Shigella;95.32% 95 29974 4 ESC_XA1114AA_AS 90227 90227 90227 90227 90227 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 F2:B- 03_fastbaps 08_fastbaps E ESC_XA1108AA_AS No ESC_MA0433AA 38 SRR8533734;ILLUMINA;Paired;;SRX5336146 Human 2010 SEPEC Human Human Homo sapiens; bloodstream isolates 2010 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875326 SRS4329423 3/3/19 28/2/19 ESC_MA0433AA Assembled 73 343454 5085075 Escherichia coli / Shigella;100.0% 68 10357 4 ESC_XA1108AA_AS 90216 90216 90216 90216 90216 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B10 05_fastbaps 17_fastbaps A ESC_XA1089AA_AS No ESC_MA0452AA 265 SRR8533753;ILLUMINA;Paired;;SRX5336127 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875553 SRS4329404 3/3/19 28/2/19 ESC_MA0452AA Assembled 128 287019 5022630 Escherichia coli / Shigella;100.0% 89 10467 4 ESC_XA1089AA_AS 90186 90186 90186 90186 90186 90186 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1079AA_AS No ESC_MA0462AA 188 SRR8533763;ILLUMINA;Paired;;SRX5336117 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875476 SRS4329394 3/3/19 28/2/19 ESC_MA0462AA Assembled 174 281985 5123839 Escherichia coli / Shigella;93.54% 66 15284 4 ESC_XA1079AA_AS 90213 90213 90213 90213 90213 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F10:B10 05_fastbaps 18_fastbaps A ESC_XA1076AA_AS No ESC_MA0465AA 183 SRR8533766;ILLUMINA;Paired;;SRX5336114 Human 2013 SEPEC Human Human Homo sapiens; bloodstream isolates 2013 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875471 SRS4329391 3/3/19 28/2/19 ESC_MA0465AA Assembled 228 346029 5085653 Escherichia coli / Shigella;100.0% 64 22355 4 ESC_XA1076AA_AS 90188 90188 90188 90188 90188 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1066AA_AS No ESC_MA0475AA 83 SRR8533776;ILLUMINA;Paired;;SRX5336104 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875371 SRS4329381 3/3/19 28/2/19 ESC_MA0475AA Assembled 135 360396 5158810 Escherichia coli / Shigella;91.89% 71 36085 4 ESC_XA1066AA_AS 90203 90203 90203 90203 90203 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA1055AA_AS No ESC_MA0486AA 132 SRR8533787;ILLUMINA;Paired;;SRX5336093 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875420 SRS4329370 3/3/19 28/2/19 ESC_MA0486AA Assembled 173 268660 5107169 Escherichia coli / Shigella;100.0% 80 24715 4 ESC_XA1055AA_AS 90166 90166 90166 90166 90166 90166 90166 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_XA1050AA_AS No ESC_MA0491AA 73 SRR8533792;ILLUMINA;Paired;;SRX5336088 Human 2012 SEPEC Human Human Homo sapiens; bloodstream isolates 2012 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875361 SRS4329365 3/3/19 28/2/19 ESC_MA0491AA Assembled 106 206284 5061303 Escherichia coli / Shigella;98.63% 127 31756 4 ESC_XA1050AA_AS 90181 90181 90181 90181 90181 90181 10003 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 F2:B1 02_fastbaps 07_fastbaps D ESC_XA1018AA_AS No ESC_MA0523AA 319 SRR8533824;ILLUMINA;Paired;;SRX5336056 Human 2014 SEPEC Human Human Homo sapiens; bloodstream isolates 2014 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875606 SRS4329333 3/3/19 28/2/19 ESC_MA0523AA Assembled 82 360279 5143837 Escherichia coli / Shigella;96.97% 76 40281 4 ESC_XA1018AA_AS 90130 90130 90130 90130 90130 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_XA1004AA_AS No ESC_MA0537AA 414 SRR8533838;ILLUMINA;Paired;;SRX5336042 Human 2015 SEPEC Human Human Homo sapiens; bloodstream isolates 2015 NA NA NA North America Canada NA NA NA NA NA NA Public Health Ontario Escherichia coli NA NA NA NA NA NA NA PRJNA521038 SRP183760 NA SAMN10875701 SRS4329319 3/3/19 28/2/19 ESC_MA0537AA Assembled 220 139564 5043594 Escherichia coli / Shigella;100.0% 119 28962 4 ESC_XA1004AA_AS 90139 90139 90139 90139 90139 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_XA7358AA_AS No ESC_MA1609AA ECOLI_MEC_047 ERR3140392;ILLUMINA;Paired;250;ERX3169365 Human 2015 UPEC Human Human Homo sapiens; Urine 2015 NA NA NA Europe Norway NA NA NA NA NA NA "Department of Medical Microbiology, Stavanger University Hospital" Escherichia coli NA NA NA NA NA NA NA PRJEB31090 ERP113604 NA SAMEA5317440 ERS3124678 25/3/19 25/3/19 ESC_MA1609AA Assembled 61 174845 5109204 Escherichia coli / Shigella;98.49% 115 27958 4 ESC_XA7358AA_AS 91321 91321 91321 91321 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/norway.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_XA8795AA_AS No ESC_MA1953AA ECOL-18-VL-LA-ND-0035 SRR8815902;ILLUMINA;Paired;500;SRX5604472 Canine 2018 UPEC Companion Animal NA Urine (Canis lupus familiaris) 2018 9 NA NA North America United States Minnesota NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA324573 SRP121361 NA SAMN11288807 SRS4556371 30/3/19 29/3/19 ESC_MA1953AA Assembled 129 360284 5084512 Escherichia coli / Shigella;100.0% 60 14696 4 ESC_XA8795AA_AS 91542 91542 91542 91542 91542 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_ZA9457AA_AS No ESC_MA7009AA FSIS11921008 SRR9105560;ILLUMINA;Paired;500;SRX5880256 Bovine 2019 NA Livestock Bovine animal-cattle-steer 2019 NA NA NA North America United States California NA NA NA NA NA "United States Department of Agriculture, Food Safety and Inspection Service" Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN11811343 SRS4803002 30/5/19 22/5/19 ESC_MA7009AA Assembled 83 270030 5111219 Escherichia coli / Shigella;98.0% 64 30947 4 ESC_ZA9457AA_AS 98373 98373 98373 98373 98373 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_ZA6514AA_AS No ESC_MA7012AA FSIS11921007 SRR9105557;ILLUMINA;Paired;500;SRX5880253 Bovine 2019 NA Livestock NA animal-cattle-dairy cow 2019 NA NA NA North America United States Maryland NA NA NA NA NA "United States Department of Agriculture, Food Safety and Inspection Service" Escherichia coli NA NA NA NA NA NA NA PRJNA292667 SRP066916 NA SAMN11811342 SRS4802999 30/5/19 22/5/19 ESC_MA7012AA Assembled 71 261765 5206548 Escherichia coli / Shigella;93.94% 87 35803 4 ESC_ZA6514AA_AS 98000 98000 98000 98000 98000 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_CB2459AA_AS No ESC_NA3620AA ecoli[ST-95] SRR9615863;ILLUMINA;Paired;;SRX6379143 Human 2017 UPEC Human Human Homo sapiens; urine 2017 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145083 SRS5039797 1/7/19 1/7/19 ESC_NA3620AA Assembled 143 170656 5204214 Escherichia coli / Shigella;98.97% 190 25730 4.1 ESC_CB2459AA_AS 86276 86276 86276 86276 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F59:B1 03_fastbaps 08_fastbaps E ESC_CB2447AA_AS No ESC_NA3632AA ecoli[ST-95] SRR9615877;ILLUMINA;Paired;;SRX6379129 Human 2017 UPEC Human Human Homo sapiens; urine 2017 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145243 SRS5039783 1/7/19 1/7/19 ESC_NA3632AA Assembled 127 172947 5156452 Escherichia coli / Shigella;100.0% 134 16985 4.1 ESC_CB2447AA_AS 92959 86276 86276 86276 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_CB2384AA_AS No ESC_NA3692AA ecoli[ST-95] SRR9615948;ILLUMINA;Paired;;SRX6379058 Human 2016 UPEC Human Human Homo sapiens; urine 2016 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145230 SRS5039712 1/7/19 1/7/19 ESC_NA3692AA Assembled 166 357979 5107703 Escherichia coli / Shigella;100.0% 138 20134 4.1 ESC_CB2384AA_AS 86447 86447 86447 86447 86447 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_CB2345AA_AS No ESC_NA3731AA ecoli[ST-95] SRR9615993;ILLUMINA;Paired;;SRX6379013 Human 2015 UPEC Human Human Homo sapiens; urine 2015 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145151 SRS5039667 1/7/19 1/7/19 ESC_NA3731AA Assembled 176 239936 4986481 Escherichia coli / Shigella;97.6% 130 40356 4.1 ESC_CB2345AA_AS 86368 86368 86368 86368 85520 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F36:B32 03_fastbaps 08_fastbaps E ESC_CB2317AA_AS No ESC_NA3759AA ecoli[ST-95] SRR9616025;ILLUMINA;Paired;;SRX6378981 Human 2015 UPEC Human Human Homo sapiens; urine 2015 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145145 SRS5039635 1/7/19 1/7/19 ESC_NA3759AA Assembled 172 175980 5201548 Escherichia coli / Shigella;100.0% 113 23442 4.1 ESC_CB2317AA_AS 86375 86375 86375 86375 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_CB2309AA_AS No ESC_NA3767AA ecoli[ST-95] SRR9616033;ILLUMINA;Paired;;SRX6378973 Human 2017 UPEC Human Human Homo sapiens; urine 2017 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145202 SRS5039627 1/7/19 1/7/19 ESC_NA3767AA Assembled 138 240010 5206342 Escherichia coli / Shigella;99.12% 191 43276 4.1 ESC_CB2309AA_AS 86430 86430 86430 86430 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 08_fastbaps E ESC_CB2297AA_AS No ESC_NA3779AA ecoli[ST-95] SRR9616046;ILLUMINA;Paired;;SRX6378960 Human 2016 UPEC Human Human Homo sapiens; urine 2016 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145116 SRS5039614 1/7/19 1/7/19 ESC_NA3779AA Assembled 131 358080 5186590 Escherichia coli / Shigella;98.04% 82 11418 4.1 ESC_CB2297AA_AS 86335 86335 86335 86335 10590 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_CB2269AA_AS No ESC_NA3807AA ecoli[ST-95] SRR9616079;ILLUMINA;Paired;;SRX6378927 Human 2015 UPEC Human Human Homo sapiens; urine 2015 NA NA NA Europe France NA NA NA NA NA NA "Universite de Paris, IAME, INSERM, F-75018 Paris, France" Escherichia coli NA NA NA NA NA NA NA PRJNA551371 SRP212396 NA SAMN12145277 SRS5039581 1/7/19 1/7/19 ESC_NA3807AA Assembled 156 256636 5108382 Escherichia coli / Shigella;98.59% 135 29600 4.1 ESC_CB2269AA_AS 86469 86469 86469 86469 86469 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 02_fastbaps 05_fastbaps D ESC_CB7223AA_AS No ESC_NA5914AA AUSMDU00005416 SRR9734605;ILLUMINA;Paired;;SRX6491770 Human 2016 NA Human Human Homo sapiens 2016 NA NA NA Oceania Australia NA NA NA NA NA NA Microbiological Diagnostic Unit Escherichia coli NA NA NA NA NA NA NA PRJNA529744 SRP216508 NA SAMN12343082 SRS5140370 26/7/19 26/7/19 ESC_NA5914AA Assembled 286 160482 5386789 Escherichia coli / Shigella;94.68% 140 44643 4.1 ESC_CB7223AA_AS 103979 103979 103979 103979 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_CB9169AA_AS No ESC_NA6402AA 72.0055 SRR9914126;ILLUMINA;Paired;;SRX6663567 Bovine 1972 NA Livestock Bovine Bos taurus 1972 NA NA NA North America United States Pennsylvania NA NA NA 41.2 -77.19 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438217 SRS5223817 7/8/19 6/8/19 ESC_NA6402AA Assembled 122 453882 5175186 Escherichia coli / Shigella;100.0% 53 9458 4.1 ESC_CB9169AA_AS 104870 104870 104870 104870 104870 104870 104870 104870 1108 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 15_fastbaps F ESC_CB9097AA_AS No ESC_NA6473AA 1.348 SRR9914197;ILLUMINA;Paired;;SRX6663496 Poultry 2001 RMAE Poultry Avian Goose 2001 NA NA NA North America United States Colorado NA NA NA 39.55 -105.78 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438511 SRS5223745 7/8/19 6/8/19 ESC_NA6473AA Assembled 135 443669 5114228 Escherichia coli / Shigella;92.31% 56 5917 4.1 ESC_CB9097AA_AS 104779 104779 104779 104779 104779 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_CB8931AA_AS No ESC_NA6637AA 86.0648 SRR9913861;ILLUMINA;Paired;;SRX6663332 Poultry 1986 RMAE Wild Animal Avian Meleagris gallopavo 1986 NA NA NA North America United States Minnesota NA NA NA 46.7 -94.6 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438371 SRS5223581 7/8/19 6/8/19 ESC_NA6637AA Assembled 132 356910 5211390 Escherichia coli / Shigella;100.0% 77 13128 4.1 ESC_CB8931AA_AS 104655 104655 104600 104600 104600 104600 104600 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 Other Other fimH15 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 07_fastbaps 26_fastbaps H ESC_CB8888AA_AS No ESC_NA6680AA 84.0528 SRR9913904;ILLUMINA;Paired;;SRX6663289 Poultry 1984 RMAE Poultry Avian Gallus gallus domesticus 1984 NA NA NA North America United States Texas NA NA NA 31.96 -99.9 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438338 SRS5223538 7/8/19 6/8/19 ESC_NA6680AA Assembled 128 359528 5218874 Escherichia coli / Shigella;100.0% 91 15648 4.1 ESC_CB8888AA_AS 104600 104600 104600 104600 104600 104600 104600 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 Other Other fimH15 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 07_fastbaps 26_fastbaps H ESC_CB8832AA_AS No ESC_NA6736AA 13.0402 SRR9913960;ILLUMINA;Paired;;SRX6663233 Bovine 2013 NA Livestock Bovine Bos taurus 2013 NA NA NA North America United States Mississippi NA NA NA 32.35 -89.39 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438664 SRS5223482 7/8/19 6/8/19 ESC_NA6736AA Assembled 106 451986 5299734 Escherichia coli / Shigella;100.0% 62 6956 4.1 ESC_CB8832AA_AS 104491 104491 104491 104491 104491 1108 1108 1108 1108 44 44 1 1 NA NA NA NA NA NA Other 1108 1108 Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 14_fastbaps F ESC_CB8822AA_AS No ESC_NA6746AA 14.0223 SRR9913970;ILLUMINA;Paired;;SRX6663223 Poultry 2014 RMAE Poultry Avian Gallus gallus domesticus 2014 NA NA NA North America United States Ohio NA NA NA 40.41 -82.9 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438674 SRS5223472 7/8/19 6/8/19 ESC_NA6746AA Assembled 139 229173 5077365 Escherichia coli / Shigella;98.36% 76 19236 4.1 ESC_CB8822AA_AS 104497 104497 104497 104497 1677 1677 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_CB8729AA_AS No ESC_NA6839AA 88.0205 SRR9914063;ILLUMINA;Paired;;SRX6663130 Poultry 1988 RMAE Wild Animal Avian Meleagris gallopavo 1988 NA NA NA North America United States North Carolina NA NA NA 35.75 -79.01 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438430 SRS5223379 7/8/19 6/8/19 ESC_NA6839AA Assembled 155 281055 4983518 Escherichia coli / Shigella;100.0% 64 9212 4.1 ESC_CB8729AA_AS 104459 104459 104459 104459 104459 104459 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_CB8726AA_AS No ESC_NA6842AA 10.0383 SRR9914066;ILLUMINA;Paired;;SRX6663127 Bovine 2010 NA Livestock Bovine Bos taurus 2010 NA NA NA North America United States New York NA New York NA 40.7 -74 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN12438635 SRS5223376 7/8/19 6/8/19 ESC_NA6842AA Assembled 104 294740 5221474 Escherichia coli / Shigella;97.96% 69 11297 4.1 ESC_CB8726AA_AS 104465 104465 104465 104465 104465 23651 23651 23651 1108 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/cow.png 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F13:B- 04_fastbaps 13_fastbaps F ESC_FB3739AA_AS No ESC_OA1698AA AUSMDU00008442 SRR10127154;ILLUMINA;Paired;;SRX6855494 Human 2017 NA Human Human Homo sapiens 2017 NA NA NA Oceania Australia NA NA NA NA NA NA Microbiological Diagnostic Unit Escherichia coli NA NA NA NA NA NA NA PRJNA565795 SRP221809 NA SAMN12768842 SRS5393675 17/9/19 16/9/19 ESC_OA1698AA Assembled 136 192311 5340254 Escherichia coli / Shigella;97.33% 118 40718 4.1 ESC_FB3739AA_AS 114211 114211 114211 114211 1679 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 08_fastbaps 36_fastbaps C ESC_FB7924AA_AS No ESC_OA4257AA 112020 SRR10241430;ILLUMINA;Paired;;SRX6960102 Human 2014 SEPEC Human Human Homo sapiens; Age: 35; male; blood 2014 6 NA NA North America Canada British Columbia NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731652 SRS5486863 8/10/19 8/10/19 ESC_OA4257AA Assembled 144 326532 5067903 Escherichia coli / Shigella;96.77% 78 22669 4.1 ESC_FB7924AA_AS 116046 116046 116046 116046 40597 8533 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 16 02_fastbaps 06_fastbaps D ESC_FB9847AA_AS No ESC_OA4789AA ECOL-19-VL-WA-MO-0015 SRR10302028;ILLUMINA;Paired;500;SRX7014705 Canine 2019 ExPEC Companion Animal Canine Nose (Canis lupus familiaris) 2019 4 NA NA North America United States Missouri NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA481346 SRP224664 NA SAMN13050467 SRS5535340 18/10/19 17/10/19 ESC_OA4789AA Assembled 59 573946 5049731 Escherichia coli / Shigella;100.0% 42 7102 4.1 ESC_FB9847AA_AS 117234 117234 117234 117234 117234 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/ExPEC.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_FB9675AA_AS No ESC_OA4876AA 16AR1151 SRR10286109;ILLUMINA;Paired;;SRX6999282 Human 2016 NA Human Human Homo sapiens 2016 NA NA NA Oceania New Zealand NA NA NA NA -40.9006 174.886 Institute of Environmental Science and Research Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA531554 SRP225798 NA SAMN11381687 SRS5520998 18/10/19 16/10/19 ESC_OA4876AA Assembled 76 274622 5222506 Escherichia coli / Shigella;87.01% 116 18441 4.1 ESC_FB9675AA_AS 117126 117126 117126 117126 117126 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/new-zealand.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 K7:A1:B23 05_fastbaps 18_fastbaps A ESC_FB9641AA_AS No ESC_OA4910AA 16AR1717 SRR10286144;ILLUMINA;Paired;;SRX6999247 Human 2016 NA Human Human Homo sapiens 2016 NA NA NA Oceania New Zealand NA NA NA NA -40.9006 174.886 Institute of Environmental Science and Research Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA531554 SRP225798 NA SAMN11381927 SRS5520963 18/10/19 16/10/19 ESC_OA4910AA Assembled 153 351664 5125246 Escherichia coli / Shigella;97.92% 71 10516 4.1 ESC_FB9641AA_AS 117102 117102 117102 117102 117102 117102 117102 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/new-zealand.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 06_fastbaps 23_fastbaps B ESC_FB9640AA_AS No ESC_OA4911AA 16AR1715 SRR10286145;ILLUMINA;Paired;;SRX6999246 Human 2016 NA Human Human Homo sapiens 2016 NA NA NA Oceania New Zealand NA NA NA NA -40.9006 174.886 Institute of Environmental Science and Research Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA531554 SRP225798 NA SAMN11381926 SRS5520962 18/10/19 16/10/19 ESC_OA4911AA Assembled 140 192014 5419163 Escherichia coli / Shigella;97.94% 135 30418 4.1 ESC_FB9640AA_AS 117104 117104 117104 117104 117104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/new-zealand.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F4:A5:B- 08_fastbaps 35_fastbaps C ESC_FB9587AA_AS No ESC_OA4964AA 16AR1566 SRR10286205;ILLUMINA;Paired;;SRX6999186 Human 2016 NA Human Human Homo sapiens 2016 NA NA NA Oceania New Zealand NA NA NA NA -40.9006 174.886 Institute of Environmental Science and Research Escherichia coli NA Escherichia Coli NA NA NA NA NA PRJNA531554 SRP225798 NA SAMN11381871 SRS5520902 18/10/19 16/10/19 ESC_OA4964AA Assembled 93 233339 5020715 Escherichia coli / Shigella;98.55% 97 24345 4.1 ESC_FB9587AA_AS 117031 117031 117031 117031 117031 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/new-zealand.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_FB9215AA_AS No ESC_OA5301AA 114913 SRR10257670;ILLUMINA;Paired;;SRX6975598 Human 2015 SEPEC Human Human Homo sapiens; Age: 76; male; blood 2015 5 NA NA North America Canada British Columbia NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731693 SRS5500929 18/10/19 10/10/19 ESC_OA5301AA Assembled 147 268364 5455320 Escherichia coli / Shigella;87.67% 108 11132 4.1 ESC_FB9215AA_AS 116734 116734 116734 116734 116734 9830 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 06_fastbaps 23_fastbaps B ESC_GB3897AA_AS No ESC_OA7478AA 103897 SRR10428149;ILLUMINA;Paired;;SRX7124227 Human 2013 UPEC Human Human Homo sapiens; Age: 4; female; urine 2013 1 NA NA North America Canada Alberta NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731532 SRS5633870 13/11/19 12/11/19 ESC_OA7478AA Assembled 89 227500 5410435 Escherichia coli / Shigella;86.97% 91 15116 4.1 ESC_GB3897AA_AS 119163 119163 119163 119163 119163 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 1 06_fastbaps 22_fastbaps B ESC_GB3799AA_AS No ESC_OA7576AA 89235 SRR10425139;ILLUMINA;Paired;;SRX7121231 Human 2009 SEPEC Human Human Homo sapiens; Age: 60; female; blood 2009 9 NA NA North America Canada Ontario NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731401 SRS5631194 13/11/19 11/11/19 ESC_OA7576AA Assembled 155 352132 5326254 Escherichia coli / Shigella;96.25% 128 42714 4.1 ESC_GB3799AA_AS 119136 119136 119136 119136 119136 119136 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 10_fastbaps 44_fastbaps I ESC_GB3527AA_AS No ESC_OA7848AA 83452 SRR10420678;ILLUMINA;Paired;;SRX7118707 Human 2008 SEPEC Human Human Homo sapiens; Age: 57; female; blood 2008 10 NA NA North America Canada Alberta NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731359 SRS5629001 13/11/19 9/11/19 ESC_OA7848AA Assembled 116 237980 5401016 Escherichia coli / Shigella;93.81% 152 13754 4.1 ESC_GB3527AA_AS 119144 119144 119144 116164 116164 116164 116164 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 F2:B1 3 03_fastbaps 10_fastbaps E ESC_GB3934AA_AS No ESC_OA8067AA 108566 SRR10430284;ILLUMINA;Paired;;SRX7126330 Human 2014 UPEC Human Human Homo sapiens; Age: 4; female; urine 2014 1 NA NA North America Canada New Brunswick NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731600 SRS5635757 14/11/19 13/11/19 ESC_OA8067AA Assembled 212 359488 5142777 Escherichia coli / Shigella;100.0% 53 26690 4.1 ESC_GB3934AA_AS 119219 119219 119219 119219 119219 4921 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B10 05_fastbaps 18_fastbaps A ESC_GB6953AA_AS Yes ESC_PA0983AA EC372_ST95C SRR7967889;ILLUMINA;Paired;;SRX4801409 Human 2016 SEPEC Human Human Homo sapiens; blood culture 2016 2 NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180248 SRS3880459 18/11/19 4/10/19 ESC_PA0983AA Assembled 59 368143 5068340 Escherichia coli / Shigella;100.0% 50 4695 4.1 ESC_GB6953AA_AS 121503 121503 121503 121503 121503 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_GB6906AA_AS Yes ESC_PA1030AA EC2_ST95C SRR7967833;ILLUMINA;Paired;;SRX4801341 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 1 NA NA Oceania Australia NA NA NA NA NA NA Ausgem Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180208 SRS3880392 18/11/19 4/10/19 ESC_PA1030AA Assembled 71 194841 5239643 Escherichia coli / Shigella;100.0% 88 14948 4.1 ESC_GB6906AA_AS 121451 121451 121451 121451 45048 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_GB6901AA_AS Yes ESC_PA1035AA EC11_ST95C SRR7967838;ILLUMINA;Paired;;SRX4801336 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 1 NA NA Oceania Australia NA NA NA NA NA NA Ausgem Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180186 SRS3880387 18/11/19 4/10/19 ESC_PA1035AA Assembled 79 244267 5235519 Escherichia coli / Shigella;100.0% 79 18281 4.1 ESC_GB6901AA_AS 121455 121455 121455 121455 1104 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_GB6899AA_AS Yes ESC_PA1037AA EC104_ST95C SRR7967840;ILLUMINA;Paired;;SRX4801334 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 8 NA NA Oceania Australia NA NA NA NA NA NA Ausgem Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180184 SRS3880385 18/11/19 4/10/19 ESC_PA1037AA Assembled 67 372909 5168247 Escherichia coli / Shigella;100.0% 78 11957 4.1 ESC_GB6899AA_AS 121457 121457 121457 121457 121457 11922 11922 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH15 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F24:B1 07_fastbaps 30_fastbaps H ESC_GB6898AA_AS Yes ESC_PA1038AA EC108_ST95C SRR7967841;ILLUMINA;Paired;;SRX4801333 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 7 NA NA Oceania Australia NA NA NA NA NA NA Ausgem Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180185 SRS3880384 18/11/19 4/10/19 ESC_PA1038AA Assembled 73 219068 5112570 Escherichia coli / Shigella;96.51% 127 29444 4.1 ESC_GB6898AA_AS 121458 121458 121458 121458 121458 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F1:A1:B23 03_fastbaps 11_fastbaps E ESC_GB6892AA_AS Yes ESC_PA1044AA EC177_ST95H SRR7967847;ILLUMINA;Paired;;SRX4801327 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 12 NA NA Oceania Australia NA NA NA NA NA NA Ausgem Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180203 SRS3880378 18/11/19 4/10/19 ESC_PA1044AA Assembled 70 243492 4904295 Escherichia coli / Shigella;100.0% 73 29861 4.1 ESC_GB6892AA_AS 121438 121438 121438 121438 121438 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_GB6889AA_AS Yes ESC_PA1047AA EC152_ST95C SRR7967850;ILLUMINA;Paired;;SRX4801324 Human 2013 SEPEC Human Human Homo sapiens; blood culture 2013 2 NA NA Oceania Australia NA NA NA NA NA NA Ausgem Escherichia coli NA NA NA NA NA NA NA PRJNA480723 SRP163533 NA SAMN10180196 SRS3880375 18/11/19 4/10/19 ESC_PA1047AA Assembled 67 316029 5190620 Escherichia coli / Shigella;96.92% 84 27081 4.1 ESC_GB6889AA_AS 121440 121440 121440 121440 4005 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 08_fastbaps 35_fastbaps C ESC_GB6696AA_AS No ESC_PA1240AA Escherichia_coli_GW_UTI_039 SRR7874632;ILLUMINA;Paired;;SRX4713578 NA 2013 UPEC ND ND/Others urine 2013 NA NA NA North America United States District of Columbia NA Washington NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA485696 SRP162081 NA SAMN10086407 SRS3799312 18/11/19 17/10/19 ESC_PA1240AA Assembled 104 282234 5133458 Escherichia coli / Shigella;97.01% 110 13035 4.1 ESC_GB6696AA_AS 119725 119725 119725 119725 119725 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_GB6695AA_AS No ESC_PA1241AA Escherichia_coli_GW_UTI_040 SRR7874633;ILLUMINA;Paired;;SRX4713577 NA 2013 UPEC ND ND/Others urine 2013 NA NA NA North America United States District of Columbia NA Washington NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA485696 SRP162081 NA SAMN10086408 SRS3799311 18/11/19 17/10/19 ESC_PA1241AA Assembled 101 203920 5021647 Escherichia coli / Shigella;100.0% 181 35987 4.1 ESC_GB6695AA_AS 119737 119737 119737 119737 119737 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_GB6690AA_AS No ESC_PA1246AA Escherichia_coli_GW_UTI_037 SRR7874638;ILLUMINA;Paired;;SRX4713572 NA 2013 UPEC ND ND/Others urine 2013 NA NA NA North America United States District of Columbia NA Washington NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA485696 SRP162081 NA SAMN10086405 SRS3799306 18/11/19 17/10/19 ESC_PA1246AA Assembled 71 282244 5128411 Escherichia coli / Shigella;98.33% 84 20853 4.1 ESC_GB6690AA_AS 119733 119733 119733 119733 119733 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_GB6618AA_AS No ESC_PA1318AA Escherichia_coli_GW_UTI_010 SRR7874710;ILLUMINA;Paired;;SRX4713500 NA 2013 UPEC ND ND/Others urine 2013 NA NA NA North America United States District of Columbia NA Washington NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA485696 SRP162081 NA SAMN10086378 SRS3799233 18/11/19 17/10/19 ESC_PA1318AA Assembled 101 373970 5097979 Escherichia coli / Shigella;100.0% 89 9877 4.1 ESC_GB6618AA_AS 119694 119694 119694 119694 119694 8533 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_GB6614AA_AS No ESC_PA1322AA Escherichia_coli_GW_UTI_006 SRR7874714;ILLUMINA;Paired;;SRX4713496 NA 2013 UPEC ND ND/Others urine 2013 NA NA NA North America United States District of Columbia NA Washington NA NA NA George Washington University Escherichia coli NA NA NA NA NA NA NA PRJNA485696 SRP162081 NA SAMN10086374 SRS3799229 18/11/19 17/10/19 ESC_PA1322AA Assembled 94 248713 5020074 Escherichia coli / Shigella;98.36% 91 9418 4.1 ESC_GB6614AA_AS 41046 41046 41046 41046 41046 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 NA NA NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_GB6540AA_AS No ESC_PA1388AA ST131-NUH-ECO-017 SRR7851011;ILLUMINA;Paired;;SRX4701842 Human 2015 SEPEC Human Human Homo sapiens; blood 2015 7 NA NA Asia Singapore NA Central Singapore NA 1.321394 103.846271 National University of Singapore and Genome Institute of Singapore Escherichia coli NA NA NA NA NA NA NA PRJNA488345 SRP161866 NA SAMN10076915 SRS3788163 18/11/19 6/8/19 ESC_PA1388AA Assembled 313 105725 5272499 Escherichia coli / Shigella;95.83% 255 46837 4.1 ESC_GB6540AA_AS 119599 119599 119599 119599 119599 40809 40809 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH15 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/singapore.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 07_fastbaps 31_fastbaps H ESC_GB6463AA_AS No ESC_PA1465AA ST131-NUH-ECO-028 SRR7851088;ILLUMINA;Paired;;SRX4701765 Human 2015 SEPEC Human Human Homo sapiens; blood 2015 7 NA NA Asia Singapore NA Central Singapore NA 1.321394 103.846271 National University of Singapore and Genome Institute of Singapore Escherichia coli NA NA NA NA NA NA NA PRJNA488345 SRP161866 NA SAMN10076926 SRS3788087 18/11/19 6/8/19 ESC_PA1465AA Assembled 254 100953 5235447 Escherichia coli / Shigella;100.0% 187 38898 4.1 ESC_GB6463AA_AS 119531 119531 119531 119531 119531 119531 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/singapore.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 06_fastbaps 23_fastbaps B ESC_GB6457AA_AS No ESC_PA1471AA ST131-SGH-ECO-022 SRR7851094;ILLUMINA;Paired;;SRX4701759 Human 2015 SEPEC Human Human Homo sapiens; blood 2015 7 NA NA Asia Singapore NA Central Singapore NA 1.321394 103.846271 National University of Singapore and Genome Institute of Singapore Escherichia coli NA NA NA NA NA NA NA PRJNA488345 SRP161866 NA SAMN10076881 SRS3788081 18/11/19 6/8/19 ESC_PA1471AA Assembled 287 121216 5036861 Escherichia coli / Shigella;98.41% 167 45678 4.1 ESC_GB6457AA_AS 119515 119515 119515 119515 119515 8533 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/singapore.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_GB6087AA_AS No ESC_PA1921AA 725-ESBLA SRR7371328;ILLUMINA;Paired;;SRX4244232 Human 2017 Faecal Human Human Homo sapiens; rectal swab 2017 2 NA NA Asia Singapore NA Central Singapore NA 1.32 103.76 National University of Singapore Escherichia coli NA NA NA NA NA NA NA PRJNA476828 SRP150905 NA SAMN09460113 SRS3438975 18/11/19 28/3/19 ESC_PA1921AA Assembled 381 172093 5504638 Escherichia coli / Shigella;93.69% 138 31228 4.1 ESC_GB6087AA_AS 121272 121272 121272 121272 121272 121272 121272 121272 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/singapore.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A8:B1 05_fastbaps 19_fastbaps A ESC_GB6068AA_AS No ESC_PA1941AA UTI89 SRR7349974;ILLUMINA;Paired;;SRX4223297 Human 2000 UPEC Human Human Homo sapiens; urine 2000 NA NA NA North America United States NA NA NA NA 37.0902 -95.7129 National University of Singapore and Genome Institute of Singapore Escherichia coli NA NA NA NA NA NA NA PRJNA474982 SRP150664 NA SAMN09433099 SRS3423632 18/11/19 1/7/19 ESC_PA1941AA Assembled 127 230175 5138322 Escherichia coli / Shigella;98.11% 68 7683 4.1 ESC_GB6068AA_AS 6110 6110 6110 6110 6110 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other NA NA NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_GB5978AA_AS No ESC_PA2031AA EC00593 SRR7297011;ILLUMINA;Paired;;SRX4199362 Human 2017 UPEC Human Human Homo sapiens; urine 2017 NA NA NA North America United States Pennsylvania Allegheny County Pittsburgh NA 40.44 -79.97 University of Pittsburgh Escherichia coli NA NA NA NA NA NA NA PRJNA475751 SRP150360 NA SAMN09400797 SRS3409600 18/11/19 24/6/19 ESC_PA2031AA Assembled 112 271686 5170413 Escherichia coli / Shigella;98.3% 88 21079 4.1 ESC_GB5978AA_AS 121123 121123 121123 121123 121123 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 17_fastbaps A ESC_GB9956AA_AS No ESC_PA3586AA ECOL-19-VL-WA-MO-0014 SRR10535894;ILLUMINA;Paired;500;SRX7219694 Canine 2019 Faecal Companion Animal Canine Anus (Canis lupus familiaris) 2019 4 NA NA North America United States Missouri NA NA NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA481346 SRP224664 NA SAMN13392146 SRS5721998 30/11/19 29/11/19 ESC_PA3586AA Assembled 60 268775 5221139 Escherichia coli / Shigella;93.11% 74 7401 4.1 ESC_GB9956AA_AS 123098 123098 123098 123098 123098 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B- 06_fastbaps 22_fastbaps B ESC_GB9758AA_AS No ESC_PA3782AA N17-00941 SRR10505784;ILLUMINA;Paired;;SRX7194722 Human 2016 UPEC Human Human Homo sapiens; Age: 1; female; urine 2016 1 NA NA North America Canada Ontario NA NA NA NA NA National Microbiology Laboratory Escherichia coli NA NA NA NA NA NA NA PRJNA564992 SRP221408 NA SAMN12731729 SRS5700564 30/11/19 22/11/19 ESC_PA3782AA Assembled 188 268796 5140076 Escherichia coli / Shigella;95.45% 86 14111 4.1 ESC_GB9758AA_AS 122941 122941 122941 122941 8712 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 231 03_fastbaps 08_fastbaps E ESC_HB0486AA_AS No ESC_PA4951AA d063-15 traces-0GiGOHD;ILLUMINA;Paired;;NA Human 2013 UPEC Human Human Urine 2013 5 NA NA North America United States Washington King Seattle NA NA NA Evgeni Sokurenko Escherichia coli NA NA NA NA NA NA NA NA NA NA NA NA 2/12/19 2/12/19 ESC_PA4951AA Assembled 93 282515 5263693 Escherichia coli / Shigella;98.36% 78 16096 4.1 ESC_HB0486AA_AS 122806 92820 92820 92820 92820 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_HB8577AA_AS No ESC_PA6646AA CVM N19EC0248 SRR10687920;ILLUMINA;Paired;;SRX7364601 Poultry 2019 RMAE Poultry Avian ground turkey 2019 NA NA NA North America United States Georgia NA NA NA NA NA FDA-CVM Escherichia coli NA NA NA NA NA NA NA PRJNA292663 SRP161673 NA SAMN12943596 SRS5823345 1/1/20 14/12/19 ESC_PA6646AA Assembled 125 200988 5257126 Escherichia coli / Shigella;100.0% 176 40513 4.1 ESC_HB8577AA_AS 125160 125160 123575 123575 123575 123575 27328 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F34:B1 02_fastbaps 04_fastbaps D ESC_IB8355AA_AS No ESC_QA1957AA GC162_a SRR10985376;ILLUMINA;Paired;;SRX7647711 Human 2018 Faecal Human Human Homo sapiens; Stool_15 2018 10 NA NA North America Canada Alberta NA Calgary NA NA NA McMaster University Escherichia fergusonii NA NA NA NA NA NA NA PRJNA603771 SRP245891 NA SAMN13940737 SRS6077345 14/2/20 29/1/20 ESC_QA1957AA Assembled 435 244081 5193118 Escherichia coli / Shigella;96.15% 110 12530 4.1 ESC_IB8355AA_AS 131202 131202 131202 131202 131202 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB8255AA_AS No ESC_QA2057AA O2:H7 SRR10970065;ILLUMINA;Paired;;SRX7635571 Human 2005 NA Human Human Homo sapiens 2005 NA NA NA North America Canada Alberta NA Calgary NA NA NA National Microbiology Laboratory Escherichia coli NA O2:H7 NA NA NA NA NA PRJNA273513 SRP100528 NA SAMN13927616 SRS6066298 14/2/20 27/1/20 ESC_QA2057AA Assembled 59 283232 5039520 Escherichia coli / Shigella;97.73% 58 9792 4.1 ESC_IB8255AA_AS 131083 131083 131083 131083 131083 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_IB6619AA_AS No ESC_QA2590AA ECOL-19-VL-LA-KS-0014 SRR10947541;ILLUMINA;Paired;500;SRX7614620 Canine 2019 UPEC Companion Animal Canine Urine (Canis lupus familiaris) 2019 4 NA NA North America United States Nebraska Lancaster Lincoln NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA324573 SRP121361 NA SAMN13898672 SRS6048146 14/2/20 22/1/20 ESC_QA2590AA Assembled 103 282220 5240157 Escherichia coli / Shigella;100.0% 68 17889 4.1 ESC_IB6619AA_AS 129776 129776 129776 129776 129776 129776 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 18_fastbaps A ESC_IB6001AA_AS No ESC_QA3148AA B092X SRR10859146;ILLUMINA;Paired;500;SRX7529243 Human 2017 Faecal Human Human stool; Homo sapiens 2017 8 NA NA Asia Sri Lanka Western Colombo District Colombo Division NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA293225 SRP103093 NA SAMN11637048 SRS5968554 14/2/20 9/1/20 ESC_QA3148AA Assembled 148 183235 5166890 Escherichia coli / Shigella;98.61% 102 23108 4.1 ESC_IB6001AA_AS 129255 81282 81282 81282 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sri-lanka.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_IB6595AA_AS No ESC_QA3289AA unkown SRR10383456;ILLUMINA;Paired;;SRX7084261 Human 2017 SEPEC Human Human Homo sapiens; blood 2017 2 NA NA North America United States Ohio Hamilton Cincinnati NA 39.1412722 -84.5021165 Cincinnati Children's Hospital Medical Center Escherichia coli NA NA NA NA NA NA NA PRJNA587095 SRP227930 NA SAMN13176257 SRS5599227 14/2/20 31/1/20 ESC_QA3289AA Assembled 330 203914 5095163 Escherichia coli / Shigella;98.39% 81 18609 4.1 ESC_IB6595AA_AS 129723 129723 129723 129723 129723 8387 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7745AA_AS No ESC_QA4396AA ecoli_344 SRR8541595;ILLUMINA;Paired;;SRX5343916 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 4 NA NA North America Canada Ontario NA Toronto NA 43.6629 -79.3957 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821669 SRS4336527 14/2/20 24/1/20 ESC_QA4396AA Assembled 278 194589 5198748 Escherichia coli / Shigella;100.0% 104 25679 4.1 ESC_IB7745AA_AS 130745 130745 130745 130745 130745 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_IB7742AA_AS No ESC_QA4399AA ecoli_439 SRR8541598;ILLUMINA;Paired;;SRX5343913 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 3 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821664 SRS4336524 14/2/20 24/1/20 ESC_QA4399AA Assembled 252 195426 5085062 Escherichia coli / Shigella;100.0% 72 13982 4.1 ESC_IB7742AA_AS 130716 130716 130716 130716 130716 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7738AA_AS No ESC_QA4403AA ecoli_485 SRR8541602;ILLUMINA;Paired;;SRX5343909 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 4 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821672 SRS4336520 14/2/20 24/1/20 ESC_QA4403AA Assembled 216 360285 5080873 Escherichia coli / Shigella;100.0% 49 12671 4.1 ESC_IB7738AA_AS 130718 130718 130718 90411 90411 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7732AA_AS No ESC_QA4409AA ecoli_269 SRR8541608;ILLUMINA;Paired;;SRX5343903 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 9 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821595 SRS4336513 14/2/20 24/1/20 ESC_QA4409AA Assembled 212 207626 5068254 Escherichia coli / Shigella;97.18% 89 25742 4.1 ESC_IB7732AA_AS 130724 130724 130724 130724 130724 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 11_fastbaps E ESC_IB7731AA_AS No ESC_QA4410AA HVH_118_4_7345399_ SRR8541609;ILLUMINA;Paired;;SRX5343902 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 9 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821598 SRS4336514 14/2/20 24/1/20 ESC_QA4410AA Assembled 199 281177 5329031 Escherichia coli / Shigella;96.78% 109 15855 4.1 ESC_IB7731AA_AS 130725 130725 130725 130725 130725 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH234 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7726AA_AS No ESC_QA4415AA HVH_104_4_6977960_ SRR8541614;ILLUMINA;Paired;;SRX5343897 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 10 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821601 SRS4337102 14/2/20 24/1/20 ESC_QA4415AA Assembled 212 204006 5182235 Escherichia coli / Shigella;100.0% 71 19144 4.1 ESC_IB7726AA_AS 130730 130730 130730 130730 86250 1104 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 1104 fimH27 O25 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B- 08_fastbaps 35_fastbaps C ESC_IB7723AA_AS No ESC_QA4418AA HVH_32_4_3773988_ SRR8541617;ILLUMINA;Paired;;SRX5343894 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 11 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821458 SRS4337099 14/2/20 24/1/20 ESC_QA4418AA Assembled 104 238257 5234331 Escherichia coli / Shigella;98.9% 141 13818 4.1 ESC_IB7723AA_AS 130734 130734 130734 130734 130734 130734 27328 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 02_fastbaps 04_fastbaps D ESC_IB7720AA_AS No ESC_QA4421AA UMEA_3834_1 SRR8541620;ILLUMINA;Paired;;SRX5343891 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 3 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821386 SRS4336908 14/2/20 24/1/20 ESC_QA4421AA Assembled 101 263880 5178289 Escherichia coli / Shigella;100.0% 117 14474 4.1 ESC_IB7720AA_AS 130735 130735 130735 130735 130735 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB7718AA_AS No ESC_QA4423AA ecoli_435 SRR8541622;ILLUMINA;Paired;;SRX5343889 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 8 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821574 SRS4336906 14/2/20 24/1/20 ESC_QA4423AA Assembled 217 604564 5121162 Escherichia coli / Shigella;100.0% 39 6388 4.1 ESC_IB7718AA_AS 130739 130739 130739 130739 130512 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 18_fastbaps A ESC_IB7713AA_AS No ESC_QA4428AA HVH_199_4_5670322_ SRR8541627;ILLUMINA;Paired;;SRX5343884 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 9 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821579 SRS4336510 14/2/20 24/1/20 ESC_QA4428AA Assembled 354 360565 5169946 Escherichia coli / Shigella;100.0% 98 9593 4.1 ESC_IB7713AA_AS 130684 130684 130684 130684 130684 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_IB7712AA_AS No ESC_QA4429AA H252 SRR8541628;ILLUMINA;Paired;;SRX5343883 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 9 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821580 SRS4336901 14/2/20 24/1/20 ESC_QA4429AA Assembled 253 360220 5124022 Escherichia coli / Shigella;100.0% 61 17181 4.1 ESC_IB7712AA_AS 130683 130683 130683 130683 130683 130683 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 F24:B- 10_fastbaps 43_fastbaps I ESC_IB7708AA_AS No ESC_QA4433AA ecoli_425 SRR8541632;ILLUMINA;Paired;;SRX5343879 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 11 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821465 SRS4336507 14/2/20 24/1/20 ESC_QA4433AA Assembled 352 458122 5121579 Escherichia coli / Shigella;100.0% 55 6956 4.1 ESC_IB7708AA_AS 130689 130689 130689 130689 130689 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7693AA_AS No ESC_QA4448AA UMEA_3834_1 SRR8541647;ILLUMINA;Paired;;SRX5343864 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 6 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821565 SRS4336899 14/2/20 24/1/20 ESC_QA4448AA Assembled 186 266464 5161451 Escherichia coli / Shigella;100.0% 77 11032 4.1 ESC_IB7693AA_AS 130702 130702 130702 130702 130702 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB7686AA_AS No ESC_QA4455AA ecoli_088 SRR8541268;ILLUMINA;Paired;;SRX5343857 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 12 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821483 SRS4336490 14/2/20 24/1/20 ESC_QA4455AA Assembled 46 399979 5054259 Escherichia coli / Shigella;97.78% 70 10277 4.1 ESC_IB7686AA_AS 130671 130671 130671 130671 130621 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7683AA_AS No ESC_QA4458AA UTI89 SRR8541271;ILLUMINA;Paired;;SRX5343854 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 12 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821486 SRS4336487 14/2/20 24/1/20 ESC_QA4458AA Assembled 78 340069 5294558 Escherichia coli / Shigella;95.66% 61 9803 4.1 ESC_IB7683AA_AS 130672 130672 130672 130672 130672 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 06_fastbaps 22_fastbaps B ESC_IB7682AA_AS No ESC_QA4459AA HVH_199_4_5670322_ SRR8541272;ILLUMINA;Paired;;SRX5343853 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 11 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821631 SRS4336489 14/2/20 24/1/20 ESC_QA4459AA Assembled 104 360153 5125131 Escherichia coli / Shigella;100.0% 57 7660 4.1 ESC_IB7682AA_AS 130673 130673 130673 130673 130673 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_IB7676AA_AS No ESC_QA4465AA ecoli_030 SRR8541278;ILLUMINA;Paired;;SRX5343847 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 11 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821344 SRS4336481 14/2/20 24/1/20 ESC_QA4465AA Assembled 35 326028 5083124 Escherichia coli / Shigella;98.11% 70 10396 4.1 ESC_IB7676AA_AS 130681 130681 130681 130681 130681 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7673AA_AS No ESC_QA4468AA ecoli_403 SRR8541281;ILLUMINA;Paired;;SRX5343844 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 11 NA NA North America Canada Ontario NA Toronto NA 43.6629 -79.3957 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821347 SRS4336478 14/2/20 24/1/20 ESC_QA4468AA Assembled 266 279456 5259670 Escherichia coli / Shigella;100.0% 98 14359 4.1 ESC_IB7673AA_AS 130664 130664 130664 130664 130664 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB7669AA_AS No ESC_QA4472AA KTE55 SRR8541285;ILLUMINA;Paired;;SRX5343840 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 11 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821351 SRS4336474 14/2/20 24/1/20 ESC_QA4472AA Assembled 346 230297 5119661 Escherichia coli / Shigella;100.0% 77 20479 4.1 ESC_IB7669AA_AS 130668 130668 130668 130668 130668 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7668AA_AS No ESC_QA4473AA HVH_199_4_5670322_ SRR8541286;ILLUMINA;Paired;;SRX5343839 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 12 NA NA North America Canada Ontario NA Toronto NA 43.6629 -79.3957 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821352 SRS4336473 14/2/20 24/1/20 ESC_QA4473AA Assembled 250 360347 5041867 Escherichia coli / Shigella;100.0% 47 6648 4.1 ESC_IB7668AA_AS 130665 130665 130665 130665 130665 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH? O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_IB7656AA_AS No ESC_QA4485AA ecoli_253 SRR8541298;ILLUMINA;Paired;;SRX5343827 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 3 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821387 SRS4336461 14/2/20 24/1/20 ESC_QA4485AA Assembled 77 346030 5070164 Escherichia coli / Shigella;100.0% 80 7960 4.1 ESC_IB7656AA_AS 130636 130636 130636 130636 130636 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7649AA_AS No ESC_QA4492AA HVH_199_4_5670322_ SRR8541305;ILLUMINA;Paired;;SRX5343820 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 3 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821528 SRS4336454 14/2/20 24/1/20 ESC_QA4492AA Assembled 191 360571 5143693 Escherichia coli / Shigella;100.0% 61 6885 4.1 ESC_IB7649AA_AS 130638 130638 130638 130638 130638 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_IB7639AA_AS No ESC_QA4502AA HVH_203_4_3126218_ SRR8541315;ILLUMINA;Paired;;SRX5343810 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 11 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821629 SRS4336444 14/2/20 24/1/20 ESC_QA4502AA Assembled 125 182464 5156188 Escherichia coli / Shigella;97.67% 115 35595 4.1 ESC_IB7639AA_AS 130650 130650 130650 130650 26607 26607 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_IB7635AA_AS No ESC_QA4506AA KTE55 SRR8541319;ILLUMINA;Paired;;SRX5343806 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 8 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821418 SRS4336440 14/2/20 24/1/20 ESC_QA4506AA Assembled 274 268775 5093420 Escherichia coli / Shigella;98.0% 61 6598 4.1 ESC_IB7635AA_AS 130602 130602 130602 130602 130602 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7632AA_AS No ESC_QA4509AA UMEA_3834_1 SRR8541322;ILLUMINA;Paired;;SRX5343803 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 9 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821419 SRS4336438 14/2/20 24/1/20 ESC_QA4509AA Assembled 80 191762 5247884 Escherichia coli / Shigella;100.0% 158 17058 4.1 ESC_IB7632AA_AS 130607 130607 130607 130607 130607 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB7630AA_AS No ESC_QA4511AA BIDMC_65 SRR8541324;ILLUMINA;Paired;;SRX5343801 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 7 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821413 SRS4336434 14/2/20 24/1/20 ESC_QA4511AA Assembled 36 281911 5046839 Escherichia coli / Shigella;100.0% 55 8276 4.1 ESC_IB7630AA_AS 130609 130609 130609 130609 130609 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B- 05_fastbaps 18_fastbaps A ESC_IB7625AA_AS No ESC_QA4516AA KTE240 SRR8541329;ILLUMINA;Paired;;SRX5343796 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 11 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821309 SRS4336430 14/2/20 24/1/20 ESC_QA4516AA Assembled 377 204003 4969358 Escherichia coli / Shigella;98.22% 78 12681 4.1 ESC_IB7625AA_AS 130612 130612 130612 130612 130612 130612 130612 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 03_fastbaps 10_fastbaps E ESC_IB7615AA_AS No ESC_QA4526AA ecoli_396 SRR8541339;ILLUMINA;Paired;;SRX5343786 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 2 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821654 SRS4336420 14/2/20 24/1/20 ESC_QA4526AA Assembled 314 360223 5064212 Escherichia coli / Shigella;100.0% 46 6671 4.1 ESC_IB7615AA_AS 130621 130621 130621 130621 130621 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7611AA_AS No ESC_QA4530AA ecoli_202 SRR8541343;ILLUMINA;Paired;;SRX5343782 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 3 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821658 SRS4336893 14/2/20 24/1/20 ESC_QA4530AA Assembled 171 267675 5164597 Escherichia coli / Shigella;98.18% 73 8762 4.1 ESC_IB7611AA_AS 130625 130625 130625 130625 130625 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7609AA_AS No ESC_QA4532AA ecoli_203 SRR8541345;ILLUMINA;Paired;;SRX5343780 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 3 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821662 SRS4336890 14/2/20 24/1/20 ESC_QA4532AA Assembled 41 310329 5072649 Escherichia coli / Shigella;100.0% 52 13750 4.1 ESC_IB7609AA_AS 130628 130628 130628 130628 130628 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7604AA_AS No ESC_QA4537AA RS218 SRR8541350;ILLUMINA;Paired;;SRX5343775 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 6 NA NA North America Canada Ontario NA Toronto NA 43.6629 -79.3957 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821410 SRS4336885 14/2/20 24/1/20 ESC_QA4537AA Assembled 281 268734 5132661 Escherichia coli / Shigella;98.44% 87 8552 4.1 ESC_IB7604AA_AS 130631 130631 130631 130631 130631 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7597AA_AS No ESC_QA4544AA PMV_1 SRR8541357;ILLUMINA;Paired;;SRX5343768 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 9 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821588 SRS4336878 14/2/20 24/1/20 ESC_QA4544AA Assembled 80 276892 5109376 Escherichia coli / Shigella;100.0% 131 13881 4.1 ESC_IB7597AA_AS 130590 130590 130590 130590 130590 130590 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH? O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 06_fastbaps 23_fastbaps B ESC_IB7591AA_AS No ESC_QA4550AA RS218 SRR8541363;ILLUMINA;Paired;;SRX5343762 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 1 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821501 SRS4336872 14/2/20 24/1/20 ESC_QA4550AA Assembled 63 235251 5095516 Escherichia coli / Shigella;98.46% 83 8174 4.1 ESC_IB7591AA_AS 130545 130545 130545 130545 130545 87098 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7582AA_AS No ESC_QA4559AA RS218 SRR8541372;ILLUMINA;Paired;;SRX5343753 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 11 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821461 SRS4336863 14/2/20 24/1/20 ESC_QA4559AA Assembled 195 240772 5175136 Escherichia coli / Shigella;98.7% 107 7200 4.1 ESC_IB7582AA_AS 130555 130555 130555 130555 90531 1680 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7576AA_AS No ESC_QA4565AA UTI89 SRR8541378;ILLUMINA;Paired;;SRX5343747 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 1 NA NA North America Canada Ontario NA Toronto NA 44.6316 -63.5822 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821500 SRS4336414 14/2/20 24/1/20 ESC_QA4565AA Assembled 53 240494 5110649 Escherichia coli / Shigella;100.0% 103 16081 4.1 ESC_IB7576AA_AS 130561 130561 130561 130561 130561 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB7574AA_AS No ESC_QA4567AA ecoli_411 SRR8541380;ILLUMINA;Paired;;SRX5343745 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 3 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821392 SRS4336412 14/2/20 24/1/20 ESC_QA4567AA Assembled 284 360383 5089200 Escherichia coli / Shigella;100.0% 62 7581 4.1 ESC_IB7574AA_AS 130564 130564 130564 130564 130564 9916 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7572AA_AS No ESC_QA4569AA ecoli_085 SRR8541382;ILLUMINA;Paired;;SRX5343743 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 12 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821481 SRS4336410 14/2/20 24/1/20 ESC_QA4569AA Assembled 28 405870 5108166 Escherichia coli / Shigella;100.0% 56 18871 4.1 ESC_IB7572AA_AS 130566 130566 130564 130564 130564 9916 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F-:B10 05_fastbaps 18_fastbaps A ESC_IB7571AA_AS No ESC_QA4570AA KTE229 SRR8541383;ILLUMINA;Paired;;SRX5343742 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 11 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821476 SRS4336409 14/2/20 24/1/20 ESC_QA4570AA Assembled 81 358209 5534358 Escherichia coli / Shigella;96.88% 94 20968 4.1 ESC_IB7571AA_AS 130565 130565 130565 130565 130565 130565 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 33_fastbaps H ESC_IB7561AA_AS No ESC_QA4580AA ecoli_447 SRR8541393;ILLUMINA;Paired;;SRX5343732 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 2 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821519 SRS4336399 14/2/20 24/1/20 ESC_QA4580AA Assembled 291 360398 5107031 Escherichia coli / Shigella;100.0% 44 7879 4.1 ESC_IB7561AA_AS 130576 130576 130385 130385 130385 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 05_fastbaps 18_fastbaps A ESC_IB7548AA_AS No ESC_QA4593AA ecoli_041 SRR8541406;ILLUMINA;Paired;;SRX5343719 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 12 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821355 SRS4336392 14/2/20 24/1/20 ESC_QA4593AA Assembled 42 357984 5054227 Escherichia coli / Shigella;100.0% 71 10815 4.1 ESC_IB7548AA_AS 130584 130584 130584 130584 130584 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7542AA_AS No ESC_QA4599AA KTE118 SRR8541412;ILLUMINA;Paired;;SRX5343713 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 4 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821549 SRS4336390 14/2/20 24/1/20 ESC_QA4599AA Assembled 244 358039 5207125 Escherichia coli / Shigella;97.87% 63 6897 4.1 ESC_IB7542AA_AS 130529 130529 130529 130529 130529 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7532AA_AS No ESC_QA4609AA ecoli_356 SRR8541422;ILLUMINA;Paired;;SRX5343703 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 10 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821615 SRS4336376 14/2/20 24/1/20 ESC_QA4609AA Assembled 404 282235 5199001 Escherichia coli / Shigella;98.34% 88 12876 4.1 ESC_IB7532AA_AS 130522 130522 130522 11885 11885 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7531AA_AS No ESC_QA4610AA ecoli_313 SRR8541423;ILLUMINA;Paired;;SRX5343702 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 10 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821614 SRS4336375 14/2/20 24/1/20 ESC_QA4610AA Assembled 301 458414 5064029 Escherichia coli / Shigella;100.0% 52 6847 4.1 ESC_IB7531AA_AS 130521 130521 130521 130521 130521 9592 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH250 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7529AA_AS No ESC_QA4612AA IHE3034 SRR8541425;ILLUMINA;Paired;;SRX5343700 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 11 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821622 SRS4336373 14/2/20 24/1/20 ESC_QA4612AA Assembled 335 320537 5181040 Escherichia coli / Shigella;100.0% 93 6738 4.1 ESC_IB7529AA_AS 130539 130539 130539 130539 130539 130539 130539 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_IB7528AA_AS No ESC_QA4613AA ecoli_299 SRR8541426;ILLUMINA;Paired;;SRX5343699 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 11 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821621 SRS4336372 14/2/20 24/1/20 ESC_QA4613AA Assembled 304 458337 5181549 Escherichia coli / Shigella;100.0% 47 7441 4.1 ESC_IB7528AA_AS 130540 130540 130385 130385 130385 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7523AA_AS No ESC_QA4618AA ecoli_213 SRR8541431;ILLUMINA;Paired;;SRX5343694 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 9 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821445 SRS4336367 14/2/20 24/1/20 ESC_QA4618AA Assembled 91 360269 5200894 Escherichia coli / Shigella;100.0% 72 9361 4.1 ESC_IB7523AA_AS 130508 130508 130508 130508 130508 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7519AA_AS No ESC_QA4622AA RS218 SRR8541435;ILLUMINA;Paired;;SRX5343690 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 10 NA NA North America Canada Ontario NA Toronto NA 43.6629 -79.3957 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821449 SRS4336364 14/2/20 24/1/20 ESC_QA4622AA Assembled 417 353923 5119518 Escherichia coli / Shigella;97.73% 55 6388 4.1 ESC_IB7519AA_AS 130510 130510 130510 130510 130510 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7517AA_AS No ESC_QA4624AA ecoli_326 SRR8541437;ILLUMINA;Paired;;SRX5343688 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 8 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821572 SRS4336361 14/2/20 24/1/20 ESC_QA4624AA Assembled 191 278345 5105039 Escherichia coli / Shigella;98.0% 62 10097 4.1 ESC_IB7517AA_AS 130512 130512 130512 130512 130512 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7516AA_AS No ESC_QA4625AA ecoli_349 SRR8541438;ILLUMINA;Paired;;SRX5343687 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 11 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821314 SRS4336359 14/2/20 24/1/20 ESC_QA4625AA Assembled 223 284271 5205044 Escherichia coli / Shigella;98.55% 112 16832 4.1 ESC_IB7516AA_AS 130513 130513 130513 130513 130513 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_IB7499AA_AS No ESC_QA4642AA UMEA_3632_1 SRR8541455;ILLUMINA;Paired;;SRX5343670 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 4 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821397 SRS4336343 14/2/20 24/1/20 ESC_QA4642AA Assembled 324 211154 5215522 Escherichia coli / Shigella;98.63% 90 33246 4.1 ESC_IB7499AA_AS 130463 130463 130463 130463 130463 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other NA NA NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_IB7490AA_AS No ESC_QA4651AA HVH_199_4_5670322_ SRR8541464;ILLUMINA;Paired;;SRX5343661 Human 2012 UPEC Human Human Homo_sapiens; female; urine 2012 10 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821299 SRS4336334 14/2/20 24/1/20 ESC_QA4651AA Assembled 191 332120 5156365 Escherichia coli / Shigella;97.96% 65 8200 4.1 ESC_IB7490AA_AS 130474 130474 130474 130474 130474 4847 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 17_fastbaps A ESC_IB7486AA_AS No ESC_QA4655AA ecoli_369 SRR8541468;ILLUMINA;Paired;;SRX5343657 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 1 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821510 SRS4336330 14/2/20 24/1/20 ESC_QA4655AA Assembled 349 353640 5086160 Escherichia coli / Shigella;98.12% 67 7244 4.1 ESC_IB7486AA_AS 130520 130520 130520 130520 130520 2219 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 Other fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 06_fastbaps 22_fastbaps B ESC_IB7473AA_AS No ESC_QA4668AA ecoli_523 SRR8541481;ILLUMINA;Paired;;SRX5343644 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 2 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821646 SRS4336317 14/2/20 24/1/20 ESC_QA4668AA Assembled 191 458337 5185177 Escherichia coli / Shigella;97.73% 57 7313 4.1 ESC_IB7473AA_AS 130489 130489 130385 130385 130385 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7469AA_AS No ESC_QA4672AA HVH_3_4_7276001_ SRR8541485;ILLUMINA;Paired;;SRX5343640 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 9 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821433 SRS4336313 14/2/20 24/1/20 ESC_QA4672AA Assembled 96 269271 5035311 Escherichia coli / Shigella;100.0% 76 10014 4.1 ESC_IB7469AA_AS 130493 130493 130493 130493 130493 4283 4283 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH? O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B- 07_fastbaps 27_fastbaps H ESC_IB7465AA_AS No ESC_QA4676AA KTE240 SRR8541489;ILLUMINA;Paired;;SRX5343636 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 2 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821375 SRS4336310 14/2/20 24/1/20 ESC_QA4676AA Assembled 254 180782 5225825 Escherichia coli / Shigella;97.26% 145 31113 4.1 ESC_IB7465AA_AS 130496 130496 130496 130496 25354 9859 9859 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 1 C4:B1 03_fastbaps 09_fastbaps E ESC_IB7463AA_AS No ESC_QA4678AA UMEA_3632_1 SRR8541491;ILLUMINA;Paired;;SRX5343634 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 2 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821373 SRS4336307 14/2/20 24/1/20 ESC_QA4678AA Assembled 26 263476 5213634 Escherichia coli / Shigella;96.62% 73 41806 4.1 ESC_IB7463AA_AS 130499 130499 130463 130463 130463 28118 12576 8655 44 44 44 1 1 NA NA NA NA NA NA Other 8655 12576 Other fimH16 O1 H1 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 09_fastbaps 38_fastbaps G ESC_IB7459AA_AS No ESC_QA4682AA ecoli_473 SRR8541495;ILLUMINA;Paired;;SRX5343630 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 1 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821377 SRS4336303 14/2/20 24/1/20 ESC_QA4682AA Assembled 287 360226 5127174 Escherichia coli / Shigella;100.0% 59 6967 4.1 ESC_IB7459AA_AS 130502 130502 130502 130502 130502 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7449AA_AS No ESC_QA4692AA HVH_199_4_5670322_ SRR8541505;ILLUMINA;Paired;;SRX5343620 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 1 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821366 SRS4336293 14/2/20 24/1/20 ESC_QA4692AA Assembled 90 360157 5075680 Escherichia coli / Shigella;100.0% 83 8859 4.1 ESC_IB7449AA_AS 130452 130452 130452 130452 130452 3702 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 3702 fimH41 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_IB7443AA_AS No ESC_QA4698AA HVH_104_4_6977960_ SRR8541511;ILLUMINA;Paired;;SRX5343614 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 4 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821675 SRS4336287 14/2/20 24/1/20 ESC_QA4698AA Assembled 106 355937 5212586 Escherichia coli / Shigella;100.0% 101 7972 4.1 ESC_IB7443AA_AS 130431 130431 130431 130431 31995 9381 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A5:B1 10_fastbaps 41_fastbaps I ESC_IB7438AA_AS No ESC_QA4703AA ecoli_367 SRR8541516;ILLUMINA;Paired;;SRX5343609 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 10 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821603 SRS4336282 14/2/20 24/1/20 ESC_QA4703AA Assembled 275 482202 5121367 Escherichia coli / Shigella;100.0% 40 9133 4.1 ESC_IB7438AA_AS 130437 130437 130437 130437 130437 130437 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 05_fastbaps 18_fastbaps A ESC_IB7433AA_AS No ESC_QA4708AA ecoli_311 SRR8541521;ILLUMINA;Paired;;SRX5343604 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 10 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821608 SRS4336277 14/2/20 24/1/20 ESC_QA4708AA Assembled 326 360398 5221853 Escherichia coli / Shigella;100.0% 61 7804 4.1 ESC_IB7433AA_AS 130385 130385 130385 130385 130385 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7431AA_AS No ESC_QA4710AA KTE118 SRR8541523;ILLUMINA;Paired;;SRX5343602 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 10 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821611 SRS4336275 14/2/20 24/1/20 ESC_QA4710AA Assembled 99 358036 5154926 Escherichia coli / Shigella;97.96% 72 8636 4.1 ESC_IB7431AA_AS 130387 130387 130387 130387 130387 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB7420AA_AS No ESC_QA4721AA UMEA_3834_1 SRR8541534;ILLUMINA;Paired;;SRX5343591 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 5 NA NA North America Canada Ontario NA Toronto NA 49.2606 -123.246 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821559 SRS4336264 14/2/20 24/1/20 ESC_QA4721AA Assembled 96 267675 5220187 Escherichia coli / Shigella;100.0% 117 13594 4.1 ESC_IB7420AA_AS 130392 130392 130392 130392 130392 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B ESC_IB7413AA_AS No ESC_QA4728AA KTE240 SRR8541541;ILLUMINA;Paired;;SRX5343584 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 4 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821554 SRS4336257 14/2/20 24/1/20 ESC_QA4728AA Assembled 329 268788 5015902 Escherichia coli / Shigella;98.28% 76 7843 4.1 ESC_IB7413AA_AS 130402 130402 130402 130402 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_IB7386AA_AS No ESC_QA4755AA ecoli_513 SRR8541568;ILLUMINA;Paired;;SRX5343557 Human 2015 UPEC Human Human Homo_sapiens; female; urine 2015 1 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821642 SRS4336839 14/2/20 24/1/20 ESC_QA4755AA Assembled 233 261732 5096020 Escherichia coli / Shigella;100.0% 96 28201 4.1 ESC_IB7386AA_AS 130425 130425 130425 130425 130425 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 03_fastbaps 11_fastbaps E ESC_IB7375AA_AS No ESC_QA4766AA BIDMC_49a SRR8541576;ILLUMINA;Paired;;SRX5343549 Human 2014 UPEC Human Human Homo_sapiens; female; urine 2014 12 NA NA North America Canada Ontario NA Toronto NA 45.5048 -73.5772 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821634 SRS4336243 14/2/20 24/1/20 ESC_QA4766AA Assembled 458 268937 4970332 Escherichia coli / Shigella;100.0% 76 13331 4.1 ESC_IB7375AA_AS 130382 130382 130382 130382 130382 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_IB7362AA_AS No ESC_QA4779AA ecoli_246 SRR8541589;ILLUMINA;Paired;;SRX5343536 Human 2013 UPEC Human Human Homo_sapiens; female; urine 2013 9 NA NA North America Canada Ontario NA Toronto NA 43.5329 -80.2262 The University of British Columbia Escherichia coli NA NA NA NA NA NA NA PRJNA516477 SRP184283 NA SAMN10821426 SRS4336230 14/2/20 24/1/20 ESC_QA4779AA Assembled 102 355098 5197909 Escherichia coli / Shigella;100.0% 77 44693 4.1 ESC_IB7362AA_AS 130346 130346 130346 130346 130346 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_IB6797AA_AS No ESC_QA5510AA EC12-7389 SRR3110019;ILLUMINA;Paired;;SRX1538482 Human 2012 Faecal Human Human Homo sapiens; Age: 11; male; feces; Solid - Stool; Clinical; human (Homo Sapiens); animal - feces 2012 10 NA NA North America Canada Quebec NA NA NA 45.4039 -73.9525 National Microbiology Laboratory Escherichia coli NA O2:H Non-Motile NA NA NA NA NA PRJNA301341 SRP068668 NA SAMN04254595 SRS1254974 14/2/20 12/1/17 ESC_QA5510AA Assembled 162 204008 5268732 Escherichia coli / Shigella;97.67% 132 32265 4.1 ESC_IB6797AA_AS 129890 129890 129890 129890 129890 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/canada.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F4:B1 03_fastbaps 11_fastbaps E ESC_IB9074AA_AS No ESC_QA5699AA SCHI0016.S.176 SRR11094175;ILLUMINA;Paired;;SRX7733043 Human 2018 NA Human Human Homo sapiens; swab 2018 3 NA NA Oceania Australia Queensland Sunshine Coast NA NA -26.74 153.11 University of the Sunshine Coast Escherichia coli NA NA NA NA NA NA NA PRJNA606985 SRP249665 NA SAMN14118518 SRS6153421 17/2/20 17/2/20 ESC_QA5699AA Assembled 343 204004 5092100 Escherichia coli / Shigella;98.57% 81 23910 4.1 ESC_IB9074AA_AS 131481 131481 131481 131481 131481 8435 8435 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 8435 8435 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B10 03_fastbaps 11_fastbaps E ESC_JB5829AA_AS No ESC_QA7498AA MMMOSAM:c03a5bc6-25c8-47ab-9836-921a26fbf788 SRR11281519;ILLUMINA;Paired;;SRX7887771 Human 2017 NA Human Human Homo sapiens; clinical sample 2017 3 NA NA Europe United Kingdom England Oxfordshire Oxford NA NA NA "Modernising Medical Microbiology, NDM, Oxford University" Escherichia coli NA NA NA NA NA NA NA PRJNA604975 SRP247747 NA SAMN14345043 SRS6297299 11/3/20 10/3/20 ESC_QA7498AA Assembled 166 458199 5075859 Escherichia coli / Shigella;100.0% 38 6384 4.1 ESC_JB5829AA_AS 132787 132787 132787 132787 132787 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_JB8253AA_AS No ESC_QA8060AA LP250ESB SRR11341594;ILLUMINA;Paired;;SRX7944784 Environment 2019 Environmental Wild Animal Avian Eudyptula minor 2019 10 NA NA Oceania Australia South Australia NA NA NA NA NA Murdoch University Escherichia coli NA NA NA NA NA NA NA PRJNA613145 SRP253145 NA SAMN14395273 SRS6331621 20/3/20 18/3/20 ESC_QA8060AA Assembled 133 174844 5224883 Escherichia coli / Shigella;98.75% 98 25949 4.1 ESC_JB8253AA_AS 133341 133341 133341 133341 11816 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O? H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_JB8359AA_AS No ESC_QA8269AA LSQ49 SRR11354624;ILLUMINA;Paired;;SRX7956495 Human 2012 NA Human Human Homo sapiens; throat swab 2012 NA NA NA Asia China Tianjin NA Tianjin NA NA NA Nankai University Escherichia coli NA NA NA NA NA NA NA PRJNA613174 SRP253390 NA SAMN14395480 SRS6342670 20/3/20 20/3/20 ESC_QA8269AA Assembled 307 269064 5210539 Escherichia coli / Shigella;98.48% 106 12175 4.1 ESC_JB8359AA_AS 133372 133372 133372 133372 133372 31492 1104 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 1104 Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/china.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 C4:B1 10_fastbaps 43_fastbaps I ESC_JB8358AA_AS No ESC_QA8270AA LSQ48 SRR11354625;ILLUMINA;Paired;;SRX7956494 Human 2011 UPEC Human Human Homo sapiens; urine 2011 NA NA NA Asia China Tianjin NA Tianjin NA NA NA Nankai University Escherichia coli NA NA NA NA NA NA NA PRJNA613174 SRP253390 NA SAMN14395479 SRS6342669 20/3/20 20/3/20 ESC_QA8270AA Assembled 292 269072 5171122 Escherichia coli / Shigella;93.98% 118 33604 4.1 ESC_JB8358AA_AS 133379 133379 133379 133379 133379 133379 6620 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/china.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 1 0 1 0 0 1 F24:B1 07_fastbaps 29_fastbaps H ESC_JB8357AA_AS No ESC_QA8271AA LSQ47 SRR11354626;ILLUMINA;Paired;;SRX7956493 Human 2018 SEPEC Human Human Homo sapiens; blood 2018 NA NA NA Asia China Tianjin NA Tianjin NA NA NA Nankai University Escherichia coli NA NA NA NA NA NA NA PRJNA613174 SRP253390 NA SAMN14395478 SRS6342668 20/3/20 20/3/20 ESC_QA8271AA Assembled 335 229146 5195744 Escherichia coli / Shigella;96.2% 115 23754 4.1 ESC_JB8357AA_AS 133386 133386 133386 133386 133386 133379 6620 1104 44 44 44 1 1 NA NA NA NA NA NA Other 1104 Other Other fimH27 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/china.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 1 0 0 1 F24:B1 07_fastbaps 29_fastbaps H ESC_JB9585AA_AS No ESC_QA8600AA APEC_1478 SRR11410524;ILLUMINA;Paired;;SRX7989165 Environment 2012 Faecal Wild Animal Avian Anseriformes; feces 2012 NA NA NA Europe United Kingdom England NA NA NA 50.36 -3.26 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14444180 SRS6372766 25/3/20 24/3/20 ESC_QA8600AA Assembled 71 268098 5234024 Escherichia coli / Shigella;96.66% 125 24029 4.1 ESC_JB9585AA_AS 133700 133700 133700 133700 1592 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F34:B1 01_fastbaps 01_fastbaps J ESC_JB9522AA_AS No ESC_QA8654AA APEC_1614 SRR11406019;ILLUMINA;Paired;;SRX7984719 Poultry 2012 APEC Poultry Poultry Gallus gallus domesticus 2012 NA NA NA Europe United Kingdom England NA Liverpool NA 53.24 -2.57 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14441683 SRS6369365 25/3/20 24/3/20 ESC_QA8654AA Assembled 58 369411 5099106 Escherichia coli / Shigella;98.22% 79 14826 4.1 ESC_JB9522AA_AS 133658 133658 133658 133658 133658 133658 133658 133658 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH? O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 C4:B58 07_fastbaps 28_fastbaps H ESC_KB4202AA_AS No ESC_QA9682AA 912591 SRR11488048;ILLUMINA;Paired;;SRX8064025 Human 2020 NA Human Human Homo sapiens; human 2020 3 NA NA Europe United Kingdom NA NA NA NA NA NA Public Health England Escherichia coli NA Escherichia NA NA NA NA NA PRJNA315192 SRP071789 NA SAMN14544783 SRS6432422 8/4/20 7/4/20 ESC_QA9682AA Assembled 106 238152 5120756 Escherichia coli / Shigella;98.88% 170 44821 4.1 ESC_KB4202AA_AS 135349 135349 135349 135349 135349 9830 1655 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1655 Other fimH107 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:A5:B1 06_fastbaps 23_fastbaps B ESC_KB4192AA_AS No ESC_QA9692AA ECOL-19-VL-WA-NY-0045 SRR11487834;ILLUMINA;Paired;500;SRX8063811 Canine 2019 UPEC Companion Animal Canine Vaginal (Canis lupus familiaris) 2019 12 NA NA North America United States New York NA New York City NA NA NA FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA481346 SRP224664 NA SAMN14544543 SRS6432210 8/4/20 6/4/20 ESC_QA9692AA Assembled 156 268796 5077439 Escherichia coli / Shigella;93.59% 102 22844 4.1 ESC_KB4192AA_AS 135355 135355 135355 135355 8712 6748 6748 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 6748 6748 fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 F2:B1 03_fastbaps 08_fastbaps E ESC_KB4162AA_AS No ESC_QA9722AA 86.1061 SRR11484632;ILLUMINA;Paired;;SRX8060904 Poultry 1986 RMAE Poultry Poultry Meleagris gallopavo 1986 NA NA NA North America United States Iowa NA NA NA 41.87 -93.09 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503568 SRS6429555 8/4/20 6/4/20 ESC_QA9722AA Assembled 206 109583 5318138 Escherichia coli / Shigella;99.31% 166 23279 4.1 ESC_KB4162AA_AS 135327 135327 135327 135129 135129 100446 27980 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB4123AA_AS No ESC_QA9753AA 86.0801 SRR11484663;ILLUMINA;Paired;;SRX8060873 Environment 1986 Environmental Wild Animal Avian Phasianus colchicus 1986 NA NA NA North America United States Pennsylvania Philadelphia City of Philadelphia NA 41.2 -77.19 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503367 SRS6429524 8/4/20 6/4/20 ESC_QA9753AA Assembled 201 54279 5288611 Escherichia coli / Shigella;98.55% 249 44048 4.1 ESC_KB4123AA_AS 135302 135302 135302 135302 135207 135207 135207 98164 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 28_fastbaps H ESC_KB4030AA_AS No ESC_QA9837AA 90.1722 SRR11484747;ILLUMINA;Paired;;SRX8060789 Environment 1990 Environmental Wild Animal Avian Columba livia 1990 NA NA NA Asia India Maharashtra NA Mumbai NA 20.59 78.96 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503406 SRS6429440 8/4/20 6/4/20 ESC_QA9837AA Assembled 174 110069 4964569 Escherichia coli / Shigella;98.85% 104 14944 4.1 ESC_KB4030AA_AS 135218 135218 135218 135218 135218 104459 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/india.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_KB4003AA_AS No ESC_QA9864AA 88.0602 SRR11484774;ILLUMINA;Paired;;SRX8060762 Environment 1988 Environmental Wild Animal Avian Phasianus colchicus 1988 NA NA NA North America United States Pennsylvania Philadelphia City of Philadelphia NA 41.2 -77.19 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503382 SRS6429413 8/4/20 6/4/20 ESC_QA9864AA Assembled 194 155564 5272073 Escherichia coli / Shigella;98.29% 158 23680 4.1 ESC_KB4003AA_AS 135207 135207 135207 135207 135207 135207 135207 98164 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 28_fastbaps H ESC_KB3986AA_AS No ESC_QA9880AA 93.0689 SRR11484292;ILLUMINA;Paired;;SRX8060744 Poultry 1993 RMAE Poultry Poultry Meleagris gallopavo 1993 NA NA NA North America United States California NA NA NA 36.7 -119.4 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503658 SRS6429395 8/4/20 5/4/20 ESC_QA9880AA Assembled 127 127575 5014020 Escherichia coli / Shigella;99.1% 134 28920 4.1 ESC_KB3986AA_AS 135165 135165 135165 135165 135165 104459 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_KB3979AA_AS No ESC_QA9887AA 88.0208 SRR11484300;ILLUMINA;Paired;;SRX8060736 Poultry 1988 RMAE Poultry Poultry Meleagris gallopavo 1988 NA NA NA North America United States South Carolina Richland Columbia NA 35.75 -79.01 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503650 SRS6429387 8/4/20 5/4/20 ESC_QA9887AA Assembled 207 232421 5084854 Escherichia coli / Shigella;98.65% 102 16601 4.1 ESC_KB3979AA_AS 135171 135171 104459 104459 104459 104459 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 06_fastbaps D ESC_KB3965AA_AS No ESC_QA9901AA 86.1382 SRR11484314;ILLUMINA;Paired;;SRX8060722 Poultry 1986 RMAE Poultry Poultry Meleagris gallopavo 1986 NA NA NA North America United States Iowa NA NA NA 41.87 -93.09 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503638 SRS6429373 8/4/20 5/4/20 ESC_QA9901AA Assembled 294 129457 5337325 Escherichia coli / Shigella;97.96% 205 25338 4.1 ESC_KB3965AA_AS 135180 135180 135180 135180 135129 100446 27980 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3963AA_AS No ESC_QA9903AA 86.1141 SRR11484316;ILLUMINA;Paired;;SRX8060720 Poultry 1986 RMAE Poultry Poultry Meleagris gallopavo 1986 NA NA NA North America United States Iowa NA NA NA 41.87 -93.09 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503636 SRS6429371 8/4/20 5/4/20 ESC_QA9903AA Assembled 331 151497 5231787 Escherichia coli / Shigella;98.44% 179 30083 4.1 ESC_KB3963AA_AS 135129 135129 135129 135129 135129 100446 27980 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3958AA_AS No ESC_QA9908AA 85.1261 SRR11484322;ILLUMINA;Paired;;SRX8060714 Canine 1985 NA Companion Animal Canine Canis lupus familiaris 1985 NA NA NA North America United States Florida NA NA NA 27.99 -81.76 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503630 SRS6429365 8/4/20 5/4/20 ESC_QA9908AA Assembled 278 282505 5040575 Escherichia coli / Shigella;100.0% 72 22184 4.1 ESC_KB3958AA_AS 135185 135185 135185 135185 135185 28144 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 Other fimH250 O2 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 05_fastbaps 17_fastbaps A ESC_KB3935AA_AS No ESC_QA9931AA 10.2442 SRR11484345;ILLUMINA;Paired;;SRX8060691 Environment 2010 Environmental Wild Animal Avian Avian 2010 NA NA NA North America United States Arkansas NA NA NA 35.2 -91.83 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503233 SRS6429341 8/4/20 5/4/20 ESC_QA9931AA Assembled 136 135898 5153252 Escherichia coli / Shigella;93.0% 129 31890 4.1 ESC_KB3935AA_AS 135149 135149 135149 135149 135149 26607 1677 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1677 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 06_fastbaps D ESC_KB3783AA_AS No ESC_RA0082AA 7.2926 SRR11484496;ILLUMINA;Paired;;SRX8060540 Environment 2007 Environmental Wild Animal Primate Primate 2007 NA NA NA North America United States Missouri St. Louis NA NA 37.96 -91.83 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503199 SRS6429191 8/4/20 5/4/20 ESC_RA0082AA Assembled 123 101868 5262174 Escherichia coli / Shigella;99.32% 195 26092 4.1 ESC_KB3783AA_AS 135014 135014 135014 135014 135014 135014 135014 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 06_fastbaps 23_fastbaps B ESC_KB3527AA_AS No ESC_RA0190AA 97.1617 SRR11484604;ILLUMINA;Paired;;SRX8060432 Environment 1997 Environmental Wild Animal Avian Avian 1997 NA NA NA North America United States Pennsylvania Philadelphia City of Philadelphia NA 41.2 -77.19 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503506 SRS6429083 8/4/20 6/4/20 ESC_RA0190AA Assembled 307 106294 5231597 Escherichia coli / Shigella;99.31% 231 42745 4.1 ESC_KB3527AA_AS 134790 134790 134790 134790 134790 134790 134790 6624 44 44 44 1 1 NA NA NA NA NA NA Other 6624 Other Other fimH27 O2 H4 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:A6:B1 03_fastbaps 10_fastbaps E ESC_KB4146AA_AS No ESC_RA0203AA 96.0924 SRR11484617;ILLUMINA;Paired;;SRX8060419 Environment 1996 Environmental Wild Animal Primate Primate 1996 NA NA NA North America United States Florida NA NA NA 27.99 -81.76 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503494 SRS6429070 8/4/20 6/4/20 ESC_RA0203AA Assembled 296 192285 5254696 Escherichia coli / Shigella;99.01% 147 23717 4.1 ESC_KB4146AA_AS 135338 28066 28066 28066 28066 28066 28066 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 Other Other fimH15 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 06_fastbaps 21_fastbaps B ESC_KB3428AA_AS No ESC_RA0290AA APEC_9480 SRR11473202;ILLUMINA;Paired;;SRX8049562 Poultry 2016 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2016 NA NA NA Europe Sweden Stockholm Stockholm Municipality Stockholm NA 55.36 13 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530601 SRS6420783 8/4/20 4/4/20 ESC_RA0290AA Assembled 73 164568 5309836 Escherichia coli / Shigella;98.31% 176 36183 4.1 ESC_KB3428AA_AS 134668 134668 56067 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3427AA_AS No ESC_RA0291AA APEC_9479 SRR11473203;ILLUMINA;Paired;;SRX8049561 Poultry 2015 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2015 NA NA NA North America United States California NA Los Angeles NA 38.04 -84.3 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530600 SRS6420782 8/4/20 4/4/20 ESC_RA0291AA Assembled 75 101065 5425057 Escherichia coli / Shigella;98.2% 215 42539 4.1 ESC_KB3427AA_AS 134669 134533 72397 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3408AA_AS No ESC_RA0310AA APEC_9447 SRR11473222;ILLUMINA;Paired;;SRX8049542 Poultry 2016 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2016 NA NA NA North America United States California NA Los Angeles NA 38.04 -84.3 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530583 SRS6420763 8/4/20 4/4/20 ESC_RA0310AA Assembled 144 85720 5112417 Escherichia coli / Shigella;98.83% 212 45648 4.1 ESC_KB3408AA_AS 134679 134679 40562 40562 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O? H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KB3395AA_AS No ESC_RA0323AA APEC_7169 SRR11473235;ILLUMINA;Paired;;SRX8049529 Poultry 2016 APEC Poultry Poultry Gallus gallus domesticus; bone marrow 2016 NA NA NA Europe United Kingdom England Greater London London NA 55.56 -3.24 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530571 SRS6420750 8/4/20 4/4/20 ESC_RA0323AA Assembled 51 34641 5111501 Escherichia coli / Shigella;99.31% 341 49747 4.1 ESC_KB3395AA_AS 84894 84894 31211 10890 10890 9662 44 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 44 Other fimH15 O- H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 1 1 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B8 06_fastbaps 24_fastbaps B ESC_KB3369AA_AS No ESC_RA0349AA APEC_7142 SRR11473262;ILLUMINA;Paired;;SRX8049503 Poultry 2016 APEC Poultry Poultry Gallus gallus domesticus; swab 2016 NA NA NA Europe United Kingdom England Greater London London NA 55.56 -3.24 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530545 SRS6420724 8/4/20 4/4/20 ESC_RA0349AA Assembled 105 59064 5324538 Escherichia coli / Shigella;99.1% 280 44095 4.1 ESC_KB3369AA_AS 134592 134592 4252 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O- H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3352AA_AS No ESC_RA0366AA APEC_4489 SRR11473279;ILLUMINA;Paired;;SRX8049486 Poultry 2017 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2017 NA NA NA Europe United Kingdom England Greater London London NA 55.56 -3.24 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530529 SRS6420707 8/4/20 4/4/20 ESC_RA0366AA Assembled 77 143639 5258661 Escherichia coli / Shigella;97.45% 182 28669 4.1 ESC_KB3352AA_AS 134648 4255 4255 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3281AA_AS No ESC_RA0437AA APEC_9525 SRR11473349;ILLUMINA;Paired;;SRX8049415 Poultry 2015 APEC Poultry Poultry Gallus gallus domesticus; ovaries 2015 NA NA NA Europe Sweden Stockholm Stockholm Municipality Stockholm NA 55.36 13 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530633 SRS6420636 8/4/20 4/4/20 ESC_RA0437AA Assembled 94 88770 5056973 Escherichia coli / Shigella;98.65% 192 33841 4.1 ESC_KB3281AA_AS 134573 134573 134573 84933 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KB3279AA_AS No ESC_RA0439AA APEC_9523 SRR11473351;ILLUMINA;Paired;;SRX8049413 Poultry 2015 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2015 NA NA NA Europe France Ile-de-France NA Paris NA 48.43 2.21 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530631 SRS6420634 8/4/20 4/4/20 ESC_RA0439AA Assembled 110 104044 5344768 Escherichia coli / Shigella;98.7% 215 49587 4.1 ESC_KB3279AA_AS 134575 134533 72397 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/france.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3276AA_AS No ESC_RA0442AA APEC_9516 SRR11473354;ILLUMINA;Paired;;SRX8049410 Poultry 2015 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2015 NA NA NA Europe Sweden Stockholm Stockholm Municipality Stockholm NA 55.36 13 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530628 SRS6420631 8/4/20 4/4/20 ESC_RA0442AA Assembled 117 154092 5347100 Escherichia coli / Shigella;97.76% 179 49555 4.1 ESC_KB3276AA_AS 134534 134533 72397 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3275AA_AS No ESC_RA0443AA APEC_3765 SRR11473355;ILLUMINA;Paired;;SRX8049409 Poultry 2012 APEC Poultry Poultry Gallus gallus domesticus; Yolk sac 2012 NA NA NA Europe United Kingdom England Greater London London NA 55.56 -3.24 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530475 SRS6420630 8/4/20 4/4/20 ESC_RA0443AA Assembled 71 75248 5332666 Escherichia coli / Shigella;98.34% 228 48358 4.1 ESC_KB3275AA_AS 134535 134535 134535 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3274AA_AS No ESC_RA0444AA APEC_9515 SRR11473356;ILLUMINA;Paired;;SRX8049408 Poultry 2015 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2015 NA NA NA Europe Sweden Stockholm Stockholm Municipality Stockholm NA 55.36 13 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530627 SRS6420629 8/4/20 4/4/20 ESC_RA0444AA Assembled 141 166730 5351670 Escherichia coli / Shigella;97.21% 160 40181 4.1 ESC_KB3274AA_AS 134536 134533 72397 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB3273AA_AS No ESC_RA0445AA APEC_9514 SRR11473357;ILLUMINA;Paired;;SRX8049407 Poultry 2015 APEC Poultry Poultry Gallus gallus domesticus; abdomen 2015 NA NA NA Europe Sweden Stockholm Stockholm Municipality Stockholm NA 55.36 13 University of Bath Escherichia coli NA NA NA NA NA NA NA PRJNA592536 SRP253888 NA SAMN14530626 SRS6420628 8/4/20 4/4/20 ESC_RA0445AA Assembled 70 79767 5337604 Escherichia coli / Shigella;98.37% 240 46491 4.1 ESC_KB3273AA_AS 134536 134533 72397 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/sweden.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB4692AA_AS No ESC_RA0760AA 86.075 SRR11484317;ILLUMINA;Paired;;SRX8060719 Poultry 1986 RMAE Poultry Poultry Meleagris gallopavo 1986 NA NA NA North America United States Minnesota NA NA NA 46.7 -94.6 FDA Center for Food Safety and Applied Nutrition Escherichia coli NA NA NA NA NA NA NA PRJNA357722 SRP101500 NA SAMN14503635 SRS6429370 11/4/20 10/4/20 ESC_RA0760AA Assembled 280 151390 5239622 Escherichia coli / Shigella;98.47% 184 26789 4.1 ESC_KB4692AA_AS 135503 135503 135503 135503 135129 100446 27980 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 Other Other fimH15 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/USA.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/meat.png Raw Chicken https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/raw_chicken2.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_LB2789AA_AS No ESC_RA1705AA MMMOSAM:c91a63f6-1f2c-471c-aa00-f5fc21dac413 SRR11046389;ILLUMINA;Paired;;SRX7697504 Human 2017 NA Human Human Homo sapiens; clinical sample 2017 4 NA NA NA United Kingdom England Oxfordshire Oxford NA NA NA "Modernising Medical Microbiology, NDM, Oxford University" Escherichia coli NA NA NA NA NA NA NA PRJNA604910 SRP247748 NA SAMN14048941 SRS6122170 1/5/20 17/2/20 ESC_RA1705AA Assembled 180 360299 5111263 Escherichia coli / Shigella;97.5% 54 10572 4.1 ESC_LB2789AA_AS 137047 137047 137047 137047 137047 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/United_Kindgom.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png NA https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/question.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_LB0692AA_AS Yes ESC_RA2650AA EC865 SRR8776510;ILLUMINA;Paired;;SRX5566842 Human 2018 Faecal Human Human Homo sapiens; feces 2018 4 NA NA Europe Italy NA NA NA NA 41.8719 12.5674 University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA528851 SRP189295 NA SAMN11246630 SRS4529865 1/5/20 13/4/20 ESC_RA2650AA Assembled 125 282220 5210561 Escherichia coli / Shigella;100.0% 66 13899 4.1 ESC_LB0692AA_AS 136661 136661 136661 136661 136661 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/italy.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_LB0440AA_AS Yes ESC_RA2874AA EC82 SRR8776734;ILLUMINA;Paired;;SRX5566618 Canine 2017 UPEC Companion Animal Feline cat and dog urine 2017 1 NA NA Europe Italy NA NA NA NA 41.8719 12.5674 University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA528851 SRP189295 NA SAMN11246489 SRS4529641 1/5/20 13/4/20 ESC_RA2874AA Assembled 136 134003 5422902 Escherichia coli / Shigella;98.94% 127 20233 4.1 ESC_LB0440AA_AS 138335 138335 138335 138335 138335 1592 1592 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 1592 Other fimH54 O45 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/italy.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png Urine https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/urine.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/dog.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0 1 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 1 0 0 0 0 0 0 F2:B1 4 01_fastbaps 01_fastbaps J ESC_LB0394AA_AS Yes ESC_RA2920AA EC847 SRR8776780;ILLUMINA;Paired;;SRX5566572 Human 2018 Faecal Human Human Homo sapiens; feces 2018 4 NA NA Europe Italy NA NA NA NA 41.8719 12.5674 University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA528851 SRP189295 NA SAMN11246615 SRS4529595 1/5/20 13/4/20 ESC_RA2920AA Assembled 139 356808 5073402 Escherichia coli / Shigella;97.62% 56 7190 4.1 ESC_LB0394AA_AS 138391 138391 138391 138391 138391 55 55 55 44 44 44 1 1 NA NA NA NA NA NA Other 55 55 55 fimH41 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/italy.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png Gastrointestinal https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/colon.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F29:B10 05_fastbaps 18_fastbaps A ESC_LB0314AA_AS Yes ESC_RA2990AA A M KA Ab-1 SRR8738248;ILLUMINA;Paired;;SRX5530978 Environment 2016 Environmental Environment Water/River WWTP; treated sewage 2016 11 NA NA Europe Germany NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526980 SRP188610 NA SAMN11124983 SRS4497264 1/5/20 6/4/20 ESC_RA2990AA Assembled 105 280245 5365514 Escherichia coli / Shigella;96.63% 130 29857 4.1 ESC_LB0314AA_AS 136522 136522 136522 136522 136522 70040 70040 70040 44 44 44 1 1 NA NA NA NA NA NA Other Other Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 C4:B1 02_fastbaps 06_fastbaps D ESC_LB0076AA_AS Yes ESC_RA3228AA A S T-16 SRR8738072;ILLUMINA;Paired;;SRX5530740 Environment 2016 Environmental Environment Water/River Terminal; raw sewage 2016 10 NA NA Europe Germany NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526980 SRP188610 NA SAMN11125183 SRS4497028 1/5/20 6/4/20 ESC_RA3228AA Assembled 248 269958 5223774 Escherichia coli / Shigella;97.6% 142 17310 4.1 ESC_LB0076AA_AS 136439 136439 136439 136439 11082 4076 4076 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 Other Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Germany.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png Environmental https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/earth.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F2:B1 02_fastbaps 05_fastbaps D ESC_KB9768AA_AS Yes ESC_RA3349AA FH92 SRR8733852;ILLUMINA;Paired;;SRX5526744 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104373 SRS4493304 1/5/20 10/4/20 ESC_RA3349AA Assembled 122 259922 5246112 Escherichia coli / Shigella;98.65% 95 18259 4.1 ESC_KB9768AA_AS 136276 136276 136276 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9767AA_AS Yes ESC_RA3350AA FH91 SRR8733853;ILLUMINA;Paired;;SRX5526743 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104372 SRS4493303 1/5/20 10/4/20 ESC_RA3350AA Assembled 195 259922 5246968 Escherichia coli / Shigella;98.59% 95 17848 4.1 ESC_KB9767AA_AS 136276 136276 136276 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9762AA_AS Yes ESC_RA3355AA FH89 SRR8733858;ILLUMINA;Paired;;SRX5526738 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104371 SRS4493298 1/5/20 10/4/20 ESC_RA3355AA Assembled 168 259922 5247463 Escherichia coli / Shigella;100.0% 102 18903 4.1 ESC_KB9762AA_AS 136276 136276 136276 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9751AA_AS Yes ESC_RA3368AA FH108 SRR8733871;ILLUMINA;Paired;;SRX5526725 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104382 SRS4493285 1/5/20 10/4/20 ESC_RA3368AA Assembled 200 264618 5257304 Escherichia coli / Shigella;96.4% 117 28651 4.1 ESC_KB9751AA_AS 136227 136227 136227 136227 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9735AA_AS Yes ESC_RA3369AA FH100 SRR8733872;ILLUMINA;Paired;;SRX5526724 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104377 SRS4493284 1/5/20 10/4/20 ESC_RA3369AA Assembled 133 203908 5345234 Escherichia coli / Shigella;98.85% 122 22188 4.1 ESC_KB9735AA_AS 136212 136212 136212 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9734AA_AS Yes ESC_RA3370AA FH132 SRR8733873;ILLUMINA;Paired;;SRX5526723 Poultry 2016 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2016 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104397 SRS4493283 1/5/20 10/4/20 ESC_RA3370AA Assembled 145 266325 5030552 Escherichia coli / Shigella;97.1% 109 21844 4.1 ESC_KB9734AA_AS 136213 136213 136213 136213 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KB9732AA_AS Yes ESC_RA3372AA FH82 SRR8733875;ILLUMINA;Paired;;SRX5526721 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104367 SRS4493281 1/5/20 10/4/20 ESC_RA3372AA Assembled 253 266324 5037353 Escherichia coli / Shigella;98.53% 104 20346 4.1 ESC_KB9732AA_AS 136215 136215 45021 45021 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KB9729AA_AS Yes ESC_RA3375AA FH137 SRR8733878;ILLUMINA;Paired;;SRX5526718 Poultry 2016 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2016 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104399 SRS4493278 1/5/20 10/4/20 ESC_RA3375AA Assembled 150 204007 5369411 Escherichia coli / Shigella;100.0% 153 29654 4.1 ESC_KB9729AA_AS 136217 136217 4252 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F76:B1 07_fastbaps 27_fastbaps H ESC_KB9726AA_AS Yes ESC_RA3378AA FH126 SRR8733881;ILLUMINA;Paired;;SRX5526715 Poultry 2016 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2016 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104394 SRS4493275 1/5/20 10/4/20 ESC_RA3378AA Assembled 170 266103 5201102 Escherichia coli / Shigella;98.49% 104 24636 4.1 ESC_KB9726AA_AS 136220 136213 136213 136213 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KB9725AA_AS Yes ESC_RA3379AA FH127 SRR8733882;ILLUMINA;Paired;;SRX5526714 Poultry 2016 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2016 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104395 SRS4493274 1/5/20 10/4/20 ESC_RA3379AA Assembled 170 204007 5372767 Escherichia coli / Shigella;98.21% 165 29004 4.1 ESC_KB9725AA_AS 136217 136217 4252 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 F76:B1 07_fastbaps 27_fastbaps H ESC_KB9722AA_AS Yes ESC_RA3382AA FH104 SRR8733885;ILLUMINA;Paired;;SRX5526711 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104380 SRS4493271 1/5/20 10/4/20 ESC_RA3382AA Assembled 149 212400 5340061 Escherichia coli / Shigella;95.56% 121 28565 4.1 ESC_KB9722AA_AS 136227 136227 136227 136227 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9721AA_AS Yes ESC_RA3383AA FH105 SRR8733886;ILLUMINA;Paired;;SRX5526710 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104381 SRS4493270 1/5/20 10/4/20 ESC_RA3383AA Assembled 128 264618 5267020 Escherichia coli / Shigella;97.57% 117 36680 4.1 ESC_KB9721AA_AS 136227 136227 136227 136227 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9720AA_AS Yes ESC_RA3384AA FH101 SRR8733887;ILLUMINA;Paired;;SRX5526709 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104378 SRS4493269 1/5/20 10/4/20 ESC_RA3384AA Assembled 135 207029 5339126 Escherichia coli / Shigella;97.71% 128 21931 4.1 ESC_KB9720AA_AS 136212 136212 136212 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9716AA_AS Yes ESC_RA3388AA FH93 SRR8733891;ILLUMINA;Paired;;SRX5526705 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104374 SRS4493265 1/5/20 10/4/20 ESC_RA3388AA Assembled 201 264618 5257537 Escherichia coli / Shigella;96.34% 121 28716 4.1 ESC_KB9716AA_AS 136227 136227 136227 136227 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9715AA_AS Yes ESC_RA3389AA FH96 SRR8733892;ILLUMINA;Paired;;SRX5526704 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104375 SRS4493264 1/5/20 10/4/20 ESC_RA3389AA Assembled 159 378212 5280909 Escherichia coli / Shigella;97.44% 107 31455 4.1 ESC_KB9715AA_AS 136227 136227 136227 136227 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9714AA_AS Yes ESC_RA3390AA FH99 SRR8733893;ILLUMINA;Paired;;SRX5526703 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104376 SRS4493263 1/5/20 10/4/20 ESC_RA3390AA Assembled 157 260955 5337596 Escherichia coli / Shigella;97.61% 123 22194 4.1 ESC_KB9714AA_AS 136212 136212 136212 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_KB9703AA_AS Yes ESC_RA3401AA FH81 SRR8733904;ILLUMINA;Paired;;SRX5526692 Poultry 2015 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2015 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104366 SRS4493252 1/5/20 10/4/20 ESC_RA3401AA Assembled 123 360259 5036289 Escherichia coli / Shigella;98.61% 111 19762 4.1 ESC_KB9703AA_AS 136215 136215 45021 45021 2245 2245 2245 1592 44 44 44 1 1 NA NA NA NA NA NA Other 1592 2245 Other fimH30 O1 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 F24:B1 02_fastbaps 05_fastbaps D ESC_KB9700AA_AS Yes ESC_RA3404AA FH78 SRR8733907;ILLUMINA;Paired;;SRX5526689 Poultry 2016 APEC Poultry Poultry poultry farm; Gallus gallus; extraintestinal site; extraintestinal site 2016 NA NA NA Oceania Australia NA NA NA NA NA NA University of Technology Sydney Escherichia coli NA NA NA NA NA NA NA PRJNA526575 SRP188540 NA SAMN11104365 SRS4493249 1/5/20 10/4/20 ESC_RA3404AA Assembled 86 204007 5345827 Escherichia coli / Shigella;96.73% 130 31755 4.1 ESC_KB9700AA_AS 136232 136232 70297 4252 4252 4252 4252 4252 44 44 44 1 1 NA NA NA NA NA NA Other 4252 4252 4252 fimH526 O2 H5 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/Australia.jpg https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/poultry.png 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 C4:B1 07_fastbaps 27_fastbaps H ESC_LB6010AA_AS No ESC_RA5226AA ampC_0118 SRR11871242;ILLUMINA;Paired;;SRX8420961 Human 2017 SEPEC Human Human Homo sapiens; blood 2017 NA NA NA Europe Netherlands NA NA NA NA 51.82 5.86 Radboudumc Escherichia coli NA NA NA NA NA NA NA PRJNA592140 SRP265205 NA SAMN15052601 SRS6732428 29/5/20 29/5/20 ESC_RA5226AA Assembled 174 200277 5242659 Escherichia coli / Shigella;100.0% 112 22906 4.1 ESC_LB6010AA_AS 139613 139613 139613 139613 21988 1107 1107 44 44 44 44 1 1 NA NA NA NA NA NA Other 44 1107 1107 fimH18 O18 H7 https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Flags/netherlands.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png Systemic https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/blood.png https://raw.githubusercontent.com/maxlcummins/AVC171/master/images/Icons/human.png 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 F51:B10 06_fastbaps 22_fastbaps B