patient	stage	tumor_sample_barcode	CCF	TMB	meanVAF	maxVAF	CNI	CNgain Burden	CNloss Burden	CNV Burden
pt1	T1	pt1_T1_B	0.1494	5.7869	19.2657	31.66	2981.92	6	0	6
pt1	T2	pt1_T2_B	0.0193	0	0	0	492.15	0	0	0
pt10	T1	pt10_T1_B	0.0351	1.2778	1.23	1.47	74.68	1	0	1
pt10	T2	pt10_T2_B	0.0265	0	0	0	74.02	2	0	2
pt11	T1	pt11_T1_B	0.043	5.1158	6.785	12.04	378.51	4	0	4
pt11	T2	pt11_T2_B	0.0282	0	0	0	66.19	0	0	0
pt12	T1	pt12_T1_B	0.4451	8.9188	34.4667	54.09	1461.67	5	7	12
pt12	T2	pt12_T2_B	0.0216	6.3839	2.86111	5.31	101.7	0	0	0
pt13	T1	pt13_T1_B	0.0211	1.2736	1.12	1.12	125.26	0	0	0
pt13	T2	pt13_T2_B	0.0214	2.5571	0.666	1.27	71.2	1	1	2
pt14	T1	pt14_T1_B	0.0816	0	0	0	480.52	5	2	7
pt14	T2	pt14_T2_B	0.0182	0	0.38	0.38	52.08	1	1	2
pt15	T1	pt15_T1_B	0.0566	0	16.71	49.26	177.8	1	1	2
pt15	T2	pt15_T2_B	0.028	0	25.03	49.74	133.92	1	1	2
pt16	T1	pt16_T1_B	0.0539	7.6793	6.04667	7.84	140.74	0	0	0
pt16	T2	pt16_T2_B	0.1738	7.683	15.3257	27.61	713.54	7	0	7
pt17	T1	pt17_T1_B	0.0346	5.1166	5.61429	12.83	244.71	1	0	1
pt17	T2	pt17_T2_B	0.0418	3.8406	1.75	2.75	68.77	3	0	3
pt18	T1	pt18_T1_B	0.0411	0	0.623333	1.12	74.1	0	0	0
pt18	T2	pt18_T2_B	0.0471	0	0	0	29.88	1	0	1
pt19	T1	pt19_T1_B	0.0186	1.285	1.29667	1.48	46.12	0	0	0
pt19	T2	pt19_T2_B	0.0526	0	0	0	49.26	0	0	0
pt2	T1	pt2_T1_B	0.0612	7.6383	7.125	12.24	266.7	0	0	0
pt2	T2	pt2_T2_B	0.0413	5.7877	4.7375	10.8	662.99	0	0	0
pt20	T1	pt20_T1_B	0.0245	0	0	0	56.66	0	0	0
pt20	T2	pt20_T2_B	0.0319	0	0	0	34.35	0	0	0
pt21	T1	pt21_T1_B	0.8797	35.7328	24.3813	83.69	723.95	17	0	17
pt21	T2	pt21_T2_B	0.0593	28.0814	5.72125	13.62	148.36	1	0	1
pt22	T1	pt22_T1_B	0.0402	0	0.3	0.3	39.45	1	0	1
pt22	T2	pt22_T2_B	0.0352	1.273	1.43	1.43	49.25	3	0	3
pt23	T1	pt23_T1_B	0.0273	1.2808	1.28	2.41	81.99	0	0	0
pt23	T2	pt23_T2_B	0.0409	1.4353	1.01	1.52	1507.61	17	4	21
pt24	T1	pt24_T1_B	0.0225	0	0.995	1.54	106.17	0	0	0
pt24	T2	pt24_T2_B	0.0292	1.2726	2.68	3.87	92.18	0	0	0
pt25	T1	pt25_T1_B	0.6662	2.8973	40.4875	56.27	7606.57	36	47	83
pt25	T2	pt25_T2_B	0.0486	0	0.34	0.34	491.96	0	0	0
pt26	T1	pt26_T1_B	0.0293	0	0	0	18.75	1	1	2
pt26	T2	pt26_T2_B	0.0349	1.932	1.204	2.23	649.52	0	0	0
pt27	T1	pt27_T1_B	0.0353	2.8972	2.1475	4.08	483.29	0	0	0
pt27	T2	pt27_T2_B	0.0355	4.8258	2.45167	4.37	763.76	0	0	0
pt28	T1	pt28_T1_B	0.035	0	0	0	735.69	0	0	0
pt28	T2	pt28_T2_B	0.0256	0	0	0	697.34	0	0	0
pt29	T1	pt29_T1_B	0.0224	3.857	2.01	3.22	627.67	1	0	1
pt29	T2	pt29_T2_B	0.1313	4.8251	14.12	22.94	2313.04	2	0	2
pt3	T1	pt3_T1_B	0.0162	0	0.545	0.6	0	1	0	1
pt30	T1	pt30_T1_B	0.878	7.6366	54.7271	82.18	1962.84	36	2	38
pt30	T2	pt30_T2_B	0.5319	6.7508	33.4825	54.7	2954.72	12	1	13
pt31	T1	pt31_T1_B	0.0288	1.9314	1.5975	1.73	772.34	0	0	0
pt31	T2	pt31_T2_B	0.0232	0.9663	1.23	1.23	489.48	0	0	0
pt32	T1	pt32_T1_B	0.0132	1.9282	1.10875	3.06	763.74	0	0	0
pt33	T1	pt33_T1_B	0.1554	4.8244	17.0943	36.05	3645.44	8	1	9
pt33	T2	pt33_T2_B	0.0272	0	0	0	634.35	0	0	0
pt34	T1	pt34_T1_B	0.1134	3.8678	6.83	17.23	1003.61	1	0	1
pt34	T2	pt34_T2_B	0.1183	0	0	0	20.76	0	0	0
pt35	T1	pt35_T1_B	0.0275	0	0	0	703.03	0	0	0
pt35	T2	pt35_T2_B	0.0352	0	0	0	600.75	0	1	1
pt36	T1	pt36_T1_B	0.2594	6.7522	12.6967	17.17	745.85	0	0	0
pt36	T2	pt36_T2_B	0.0881	6.7508	16.9256	22.84	911.42	0	0	0
pt37	T1	pt37_T1_B	0.0899	1.9292	0.882	1.32	434.06	0	0	0
pt37	T2	pt37_T2_B	0.0544	0	0	0	389.59	0	0	0
pt38	T1	pt38_T1_B	0.2704	2.8947	17.2933	20.08	3932.58	9	0	9
pt38	T2	pt38_T2_B	0.032	0	0.36	0.36	348.38	0	0	0
pt39	T1	pt39_T1_B	0.1366	8.7461	19.5867	33.95	3176.45	8	0	8
pt39	T2	pt39_T2_B	0.0232	0	0	0	117.18	0	0	0
pt4	T1	pt4_T1_B	0.0411	0	0	0	31.41	0	1	1
pt4	T2	pt4_T2_B	0.023	0	0	0	514.08	0	0	0
pt40	T1	pt40_T1_B	0.224	5.7856	32.3257	59.83	6615.17	18	13	31
pt40	T2	pt40_T2_B	0.2135	5.7843	27.255	59.21	6395.31	21	10	31
pt41	T1	pt41_T1_B	0.262	3.8572	53.79	81.86	5715.16	24	15	39
pt41	T2	pt41_T2_B	0.2203	3.8489	28.728	47.56	3249.51	6	0	6
pt5	T1	pt5_T1_B	0.1657	0	0	0	35.53	0	0	0
pt5	T2	pt5_T2_B	0.0439	0	0	0	82.23	0	1	1
pt6	T1	pt6_T1_B	0.6101	5.1077	30.3533	62.7	2752.67	39	6	45
pt6	T2	pt6_T2_B	0.1824	3.8272	11.478	20.78	682.31	11	0	11
pt7	T1	pt7_T1_B	0.0268	5.1011	1.83	3.74	82.49	1	0	1
pt7	T2	pt7_T2_B	0.0303	2.5472	1.028	2.38	58.57	1	0	1
pt8	T1	pt8_T1_B	0.032	0	0	0	188.99	0	0	0
pt8	T2	pt8_T2_B	0.0173	0.9651	1.1	1.1	796.21	0	0	0
pt9	T1	pt9_T1_B	0.5599	1.288	30.47	60.63	2751.4	46	9	55
pt9	T2	pt9_T2_B	0.1516	1.278	21.04	21.04	1021.07	16	1	17