Gene_ID,baseMean,F13-ILEUM_S2-Uninfected-PBS,F14-ILEUM_S4-Uninfected-PBS,F15-ILEUM_S6-Uninfected-PBS,F22-ILEUM_S20-Infected-PBS,F23-ILEUM_S22-Infected-PBS,F24-ILEUM_S24-Infected-PBS,log2FoldChange,lfcSE,stat,pvalue,padj
2310047K21Rik,69.70205445,34.18,42.91,29.07,102.35,87.54,177.56,2.127251473,0.405724971,5.243087371,1.58E-07,2.09E-05
2310069B03Rik,202.9838921,87,50,32,396,288,472,3.107399719,0.70625542,4.399824246,1.08E-05,0.000563834
2310069B03Rik_1,21.09544258,0,50,32,0,0,0,-19.40017588,4.073450814,-4.762589944,1.91E-06,0.000142494
9130204K15Rik,49.19919792,16,30,10,47,56,164,2.667560157,0.607228226,4.393010807,1.12E-05,0.000575377
9130209A04Rik,13.89702034,2,11,4,25,22,20,2.213247837,0.651143876,3.399015054,0.00067629,0.013405191
Aadac,176.3799437,292,534,272,67,105,34,-2.268239209,0.671033961,-3.380215222,0.000724291,0.013995502
Abcb11,21.78708244,12,5,7,33,29,47,2.429650867,0.513953849,4.727371674,2.27E-06,0.000164825
Acaa1b,82.38283016,201.28,161.88,147.83,34.57,66.21,5.49,-2.203681005,0.419946458,-5.247528496,1.54E-07,2.05E-05
Adamts4,143.7322458,56,77,64,225,205,291.95,2.155573166,0.326571055,6.600625287,4.09E-11,2.56E-08
Adgrf1,24.89320892,11,9,4,25,18,84,3.044992689,0.739693251,4.116561405,3.85E-05,0.00143358
Ak4,947.5981965,356,121,197,924,1033,2717,3.201535398,0.656903469,4.87367711,1.10E-06,9.10E-05
Akp3,11.74237513,29,36,20,6,4,1,-2.76266045,0.666529086,-4.144846049,3.40E-05,0.0013052
Alox15,48.71729606,29.81,24.67,21.59,38.11,59.61,53.52,2.240821435,0.646865825,3.464120916,0.000531967,0.01115469
Alox15_1,23.39196007,2.19,14.33,4.41,12.89,42.39,45.48,2.612979122,0.819594743,3.188135534,0.001431934,0.022978165
B3galt5,14289.84114,6288,3717,4671,19803,22448,23582,2.428528456,0.322542522,7.529328034,5.10E-14,1.03E-10
BC040756,16.62642104,29,33,54,2,18,1,-2.424254161,0.759492605,-3.191939126,0.001413211,0.0227786
Cass4,35.63419616,23,24,12,57,83,84,2.168279773,0.405163126,5.351621688,8.72E-08,1.27E-05
Ccl17,45.26930251,20,43,13,100,88,89,2.141143393,0.485500349,4.410178898,1.03E-05,0.000543959
Ccl8,86.57675358,30,78,40,245,216,101,2.100072763,0.471992116,4.449381019,8.61E-06,0.00047136
Cd300lb,16.12818379,2,13,5,26,29,31,2.307875449,0.698313365,3.304928083,0.000950008,0.016940246
Cdh20,13.40115546,37,9,14,5,4,2,-2.15784442,0.739462164,-2.918126883,0.00352141,0.04464478
Cfh,2950.458416,933.83,825.55,1034.34,4735.77,4068.85,2861.93,2.252583023,0.687789391,3.2751058,0.001056224,0.018287989
Clca4c-ps,7.22092673,3,1,2,4,6,29,3.145700154,1.067798998,2.945966572,0.003219472,0.041692046
Cnga3,23.03773326,10,11,3,22,20,42,2.082658936,0.577493619,3.606375669,0.000310504,0.007328137
Cxcl3,6.27917579,1,5,0.5,10,15,15,3.010868143,0.927891843,3.244848163,0.001175133,0.019767761
Cxcl3_1,6.27917579,1,5,0.5,10,15,15,3.010868143,0.927891843,3.244848163,0.001175133,0.019767761
Cxcl5,88.89900292,0,30,21,143,146,325,3.911081723,0.960312627,4.072717167,4.65E-05,0.0016572
Cxcr2,16.41231664,3,22,1,23,47,47,2.463921651,0.804783482,3.061595706,0.002201606,0.031566485
Cyp11b1,25.41388729,6,2,5,45.59,19,43.92,3.360336878,0.622093386,5.401659865,6.60E-08,1.01E-05
Cyp1a1,13.76288697,63,17,25,3,4,2,-3.329140243,0.892978476,-3.728130444,0.000192906,0.005087146
Cyp2b10,28.29881788,105,38,78,11,35,2,-2.138899458,0.660369737,-3.238942275,0.001199739,0.020091301
Cyp2c55,711.7294647,837,971,729,160,186,42,-2.592796934,0.712718378,-3.637898243,0.000274872,0.006728756
Cyp2d26,1951.365163,4106,4629,3909,762,1784,232,-2.121628162,0.463727865,-4.575157805,4.76E-06,0.000289301
Cyp2d40,7.502736699,20,16,9,1,0,0,-5.13698821,1.373014984,-3.74139268,0.000183003,0.004901348
Cyp4a29,29.13050277,15,16,6,84,135,7,2.689008562,0.716405599,3.753472287,0.000174402,0.004722926
Dhrs9,455.0911839,152,242,148,563,440,954.84,2.195710057,0.375560328,5.846490947,5.02E-09,1.21E-06
Dmrt3,7.947561597,16,8,14,3,2,0,-2.768189318,0.913637139,-3.029856384,0.002446701,0.034123844
Dnah12,8.008959003,4.5,3,3,12,16.13,13.5,2.257585462,0.770454651,2.930199019,0.00338745,0.043216477
Epop,261.0712262,143,77,81,266,307,644,2.384304679,0.411020908,5.800932826,6.59E-09,1.49E-06
Erich2,11.84302703,5,6,6,23,22,15,2.089600696,0.631208085,3.310478342,0.000931367,0.016723061
Fam162a,4212.037097,1756,2333,1485,4736,4486,8735,2.037567245,0.474406847,4.294978578,1.75E-05,0.000798329
Fat3,12.94551413,23,21,20,7,4,0,-2.248004194,0.69199443,-3.248587121,0.001159797,0.019574449
Fosl1,13.2299321,0,7.08,2.22,11.71,5.95,40.76,3.144204623,1.006001406,3.125447543,0.001775347,0.026825661
Foxn1,8.853393223,4,3,1,8,6,28,2.850242357,0.907654205,3.140229331,0.001688156,0.025941252
Fut2,14116.24089,5077.91,4996.95,4267.83,20442.76,19550.85,31682.39,2.634811005,0.320109409,8.2309702,1.86E-16,4.81E-13
Gja6,6.709274581,3,1,2,8,13,19,3.035846633,0.896681338,3.385647168,0.000710106,0.013833327
Glycam1,27.2375263,56,111,26,4,24,6,-2.343774688,0.671131658,-3.49227258,0.000478929,0.010292718
Gm21814,214.1747437,314,412,492,96,127.03,16,-2.283718177,0.45046331,-5.069709618,3.98E-07,4.25E-05
Gm30159,8.958418862,20,11,19,2,4,1,-2.675054989,0.836369685,-3.198412181,0.001381866,0.022453156
Gm30262,20.86026108,14,8,1,20,21,38,2.297274453,0.736553806,3.118949944,0.001814968,0.027265152
Gm31075,9.221790373,4,1,5,24,14,18,2.665303164,0.707200357,3.768809131,0.000164028,0.004514893
Gm32263,28.87110451,10,11,18,41,38,58,2.081181108,0.475436517,4.377411144,1.20E-05,0.000605211
Gm32801,48.39233892,78,94,100,25,25,5,-2.169930024,0.395702925,-5.48373512,4.16E-08,6.92E-06
Gm32930,35.96760886,8,4,9,28,38,80,3.100590696,0.614125196,5.048792517,4.45E-07,4.48E-05
Gm33901,10.61658373,4,6,2,12,11.72,24,2.32717191,0.729683095,3.189291249,0.001426221,0.022927105
Gm34790,17.1124818,31,24,46,5,8,6,-2.219602351,0.602901233,-3.681535599,0.000231833,0.005948665
Gm35739,12.87124286,17,15,47,4,2,1,-3.362894423,0.879499701,-3.823644761,0.000131493,0.003757515
Gm36393,59.11988209,16,20,14,88,40,144.16,2.942591959,0.468487196,6.281050979,3.36E-10,1.42E-07
Gm36482,20.71544278,49,47,45,9,15,1,-2.364371503,0.535458283,-4.415603565,1.01E-05,0.000536735
Gm38679,9.765808857,18,11,40,3,3,2,-2.958191502,0.892481123,-3.314570389,0.000917841,0.016661843
Gm39008,845.8649945,271.06,187.02,268.14,1453.2,628.09,1517.54,2.624612779,0.355129,7.390589831,1.46E-13,2.21E-10
Gm40468,132.8971093,297.6,134.8,274.44,68.09,73.19,42.25,-2.032006283,0.41125799,-4.940952716,7.77E-07,7.08E-05
Gm4070,233.0787595,196.86,97.35,99.44,287.8,784.75,325.7,2.007562475,0.631818231,3.177436764,0.001485831,0.023696125
Gm44764,16.64875974,15,24,39,9,5,3,-2.030055107,0.647373509,-3.135832833,0.001713669,0.026204053
Gm51914,12.56068757,8,1,3,16,22,25,2.691958642,0.662759218,4.061744548,4.87E-05,0.001723498
Gm52677,8.416219304,2,2,0,10,13,33,4.195229084,1.039886423,4.0343147,5.48E-05,0.001882583
Gm9195,76.59556874,47,35,23,121,73,163,2.110934505,0.542318813,3.892423525,9.92E-05,0.003000273
Gml,3634.98109,1115.69,1354.38,945.59,5339.88,4831.42,7450,2.629322764,0.317773144,8.274213265,1.29E-16,3.90E-13
Gml2,1074.746365,415.31,361.62,278.41,1407.12,1388.58,2355,2.635989239,0.467891609,5.633760446,1.76E-08,3.55E-06
Gnb1l_1,9.062110801,25.89,15.15,0,0,0,0,-5.933454851,1.588022674,-3.736379177,0.000186689,0.004944804
Gp2,83.37938893,436,305,49,27,33,13,-3.203793986,0.563472308,-5.685805563,1.30E-08,2.81E-06
Gzmc,15.44362302,8,9,1,29,27,40,2.739344202,0.677849931,4.041225172,5.32E-05,0.001852556
H19,54.91849911,10,84,17,160,160,73,2.000929697,0.634212425,3.15498344,0.001605072,0.025068183
Ifi205,78.80317929,31.67,68.87,16.27,138.56,181.93,102.5,2.068235751,0.454790278,4.547669225,5.42E-06,0.000325406
Ifng,12.81534867,8,10,0,27,24,40,2.685798739,0.75244417,3.569432583,0.000357755,0.008132311
Il10,16.3630687,12,9,7,28,66,30,2.333621875,0.53722664,4.343831268,1.40E-05,0.000670553
Il1f9,6.581668367,1,5,0,3,19,26,3.35738568,1.158549621,2.897921347,0.003756448,0.046773584
Il1rl1,625.2366239,179,304,202,807,672,1505,2.459617325,0.50068186,4.912535331,8.99E-07,7.95E-05
Il1rn,742.4350438,307,301,243,685,993,1721,2.341789742,0.34911745,6.707741884,1.98E-11,1.49E-08
Klhdc7b,31.55385154,65,19,56,5,18,4,-2.246363591,0.596365337,-3.766757475,0.000165382,0.004539723
Klkb1,51.10797208,114,49,199,12,33,2,-2.925316798,0.681147617,-4.294688442,1.75E-05,0.000798329
Krt13,9.583954699,2,1,4,6,10,20,2.546231203,0.859105071,2.96381815,0.003038478,0.040093302
Krt80,59.98179468,14,36,20,87,101,137,2.490082484,0.439059151,5.671405503,1.42E-08,3.02E-06
Krt84,797.8739166,224,112,159,985,832,2131,3.367451915,0.55196249,6.100870943,1.05E-09,3.41E-07
Lce3b,10.31060423,1,3,1,15,19,26,3.885078935,0.929896983,4.177967029,2.94E-05,0.001160934
Lrg1,1913.583849,290,296,174,2644,1635,6966,4.320288619,0.837965797,5.155686108,2.53E-07,3.05E-05
Lrrc4,33.417998,9,16,14,36,32,72,2.16729054,0.514277397,4.214244205,2.51E-05,0.001031911
Ly6a,7753.223192,1302,5142,1107,7273,6760,12960,2.197298074,0.685339262,3.206146496,0.001345255,0.021936977
Ly6d,5384.622771,1562,826,805,5348,4229,16304,3.46137121,0.672486673,5.147122386,2.65E-07,3.14E-05
Ly6f,14.78747471,10,1,7,18,27,35,2.424981513,0.777762251,3.117895615,0.001821473,0.027294977
Ly6g,10.32811402,1,0,1,11,12,34,5.177204885,1.399850997,3.698397113,0.000216965,0.005623404
Lypd3,16.58659361,3,10,3,19,26,65,3.165418326,0.784773352,4.033544615,5.49E-05,0.001885189
M5C1000I18Rik,7.211730087,0,2.19,1,15.36,10.22,12.44,3.865022295,1.043832522,3.702722624,0.000213298,0.005552185
Naip5_2,7.96595268,26.17,10.05,11.36,0,0,0,-6.163374612,1.52909877,-4.030723674,5.56E-05,0.001902691
Nlrp10,157.3806133,56,56,44,214,295,242,2.505823645,0.382918223,6.544017738,5.99E-11,3.50E-08
Nr0b2,26.04518834,31,89,36,2,3,4,-3.865645464,0.768015405,-5.033291568,4.82E-07,4.83E-05
Nrg1,228.3427864,92.26,97,79,182,166,576,2.130897542,0.65878181,3.234602884,0.00121812,0.020339801
Nt5c1a,15.53698031,6,10,3,18,40,26,2.534469433,0.579578292,4.372954383,1.23E-05,0.000610087
Olfr165,380.1270493,815,476,820,154,244,49,-2.153488529,0.351911886,-6.119396977,9.39E-10,3.09E-07
Paqr8,2356.251944,769,739,694,1945,1591,5054,2.35068389,0.53547382,4.389913758,1.13E-05,0.00058198
Pbld1,56.92196055,129,78.02,135.08,25.01,37,4,-2.279214569,0.450892952,-5.05489065,4.31E-07,4.48E-05
Pla2g2e,55.67982333,12,11,6,58,50,135,3.42860632,0.532585256,6.437666611,1.21E-10,5.70E-08
Pla2g4c,1512.550495,239,1346,346,2488,6094,2667,2.753270903,0.778029742,3.538773331,0.000401991,0.008958018
Plaur,847.3222401,348,353,279,789,705,1738,2.087944368,0.483704765,4.316567706,1.58E-05,0.000738066
Plet1,11090.79702,2200.93,222,611,14066.97,8675.94,35611.95,4.720648938,1.059099884,4.45722732,8.30E-06,0.000459998
Ppef1,148.5746442,11,16,15,211,334,484,4.8901211,0.706546028,6.921164231,4.48E-12,4.27E-09
Prl6a1,13.7583606,7,6,4,15,13,28,2.044136118,0.652999453,3.130379526,0.001745806,0.026489754
Prrg4,68.72114254,27,30,20,101,84,139,2.343897014,0.376738903,6.221542277,4.92E-10,1.87E-07
Psg18,58.44369143,211,121,71,28,51,11,-2.022052637,0.425174893,-4.755813837,1.98E-06,0.000146754
Rab44,31.59116762,14,25,11,54,51,70,2.142043994,0.496854535,4.311209502,1.62E-05,0.000754243
Rasgef1a,23.63330525,17,10,10,25,31,63,2.028795767,0.535952226,3.785404124,0.000153459,0.004277256
Rdh7,341.9809017,1159,549.85,708,102,280.51,16,-2.54768735,0.703227266,-3.622850637,0.000291374,0.007001093
Retnlb,568.3861868,63,152,39,805,721,1139,3.727815828,0.818078431,4.55679515,5.19E-06,0.000314402
Rs1,11.10607886,7,0,2,15,13,45,3.432603757,0.935190962,3.670484316,0.000242091,0.006139341
S100a8,35.4510784,6,31,1,38,58,165,3.239800192,1.117276062,2.899731144,0.003734829,0.046670334
S100a9,65.0270612,8,76,9,91,110,267,2.740644256,0.885042756,3.096623566,0.001957383,0.028921151
S100g,301.1555649,464,428,522,126,162,30,-2.044922085,0.339210044,-6.028483289,1.66E-09,4.84E-07
Saa3,619.013778,293,270,175,818.01,927,825,2.082849138,0.225236935,9.247369411,2.30E-20,2.08E-16
Scgb3a1,20.5965039,5,10,8,27,28,47,2.448288806,0.659910301,3.710032719,0.000207232,0.005409842
Serpina3f,38.73947983,6.02,29,15,87,95,71,2.499055556,0.428037624,5.838401613,5.27E-09,1.26E-06
Slc45a3,440.2582103,141,69,103,420,282,862,2.703502842,0.595182409,4.542309719,5.56E-06,0.00033269
Slc6a20b,47.16027463,98.96,49.7,120.53,11.36,7.22,2.04,-3.606497513,0.541449294,-6.660822261,2.72E-11,1.83E-08
Socs1,195.5252847,91,103,69,222,329,455,2.246171434,0.365395019,6.147241521,7.88E-10,2.70E-07
Sprr2a3,17682.75089,5512.56,8142.44,5649.37,17315.07,29592.78,50697.32,2.685504364,0.530976142,5.057674255,4.24E-07,4.45E-05
Sprr2i,17.67821391,1,3,1,29,9,60,4.711241506,1.009439411,4.667186021,3.05E-06,0.000202981
Spry4,164.1585072,30,76,51,172,156,410,2.591963722,0.449690183,5.763887721,8.22E-09,1.82E-06
Stc1,42.76144708,13,19,9,29,40,98,2.408423667,0.589001325,4.088995327,4.33E-05,0.001560459
Tac1,3666.446085,846,587,598,5919,4799,12083,3.865025149,0.620165346,6.232249472,4.60E-10,1.85E-07
Teddm3,22.10733622,6,0,0,35.14,18,82.47,4.939815706,0.958876699,5.151669354,2.58E-07,3.10E-05
Trim10,120.4360265,35,72.5,29.5,189.5,173,283.77,2.555453593,0.412072174,6.201470896,5.59E-10,2.00E-07
Trim10_1,115.3733204,35,72.5,29.5,189.5,173,265.23,2.50693653,0.459473139,5.456111178,4.87E-08,7.94E-06
Trim30c,45.60531165,12,26,10,76,93,40,2.192700439,0.398851564,5.497535012,3.85E-08,6.46E-06
Trpc1,377.4678215,800,372,1299,103,246,37,-2.623373888,0.779863089,-3.363890309,0.000768521,0.014648372
Tuba8,15.91196177,5,7,3,15,25,32,2.554341039,0.624548012,4.089903403,4.32E-05,0.001560459
Ugt1a2,6.253273422,8.75,10.92,5.6,0,0,0,-5.322283369,1.377054808,-3.864975699,0.0001111,0.003294277