rank strain mean/stddev log10(P(R > R_A)) R / R_A R / R_A 95% ci lower R / R_A 95% ci upper confirmed cases / day confirmed cases total birthday mutations 1 BA.2 117.609 3006.03 8.88418 8.57826 9.201 132437 1.14025e+07 2021-12-01 ORF1a:P927L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 2 BA.1.1 83.1029 1501.96 7.46776 7.13564 7.81535 1.48776e+06 9.66077e+07 2021-11-20 ORF14:A38V,ORF1a:T265I,ORF1b:P314L,ORF1b:S961L,ORF1b:T2548I,ORF3a:Q57H,ORF8:S24L,S:D614G 3 BA.1 16.8544 63.3128 6.7954 5.48987 8.4114 3.93487e+06 2.52941e+08 2021-11-11 ORF1a:P1541S,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 4 BA.3 443.296 42674.9 6.67236 6.61899 6.72616 2721.21 309854 2021-11-25 ORF1a:A1397V,ORF1a:R3993H,ORF1a:T265I,ORF1b:L1245S,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,ORF9b:P51L,S:D614G 5 B.1.1.529 1162.74 293577 5.80116 5.78479 5.81757 0.130243 1346.64 2021-11-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 6 AY.127.1 256.87 14330.6 3.26284 3.23555 3.29037 120147 5.3665e+06 2021-09-20 ORF1a:I2501T,ORF1b:H1213Y,ORF1b:P314L,S:D614G,S:N439K 7 AY.4.2.1 75.7211 1247.33 3.1875 3.09982 3.27765 33364.3 3.34935e+06 2021-07-29 N:S194L,ORF14:Q41STOP,ORF1a:V3449F,ORF1b:P314L,S:D614G 8 AY.4.2.2 79.2636 1366.57 3.11681 3.03654 3.1992 15058 1.46272e+06 2021-08-08 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:A1078S,S:D614G 9 AY.4.2.3 49.1668 527.016 3.052 2.92874 3.18044 44558 4.02902e+06 2021-08-12 N:S194L,ORF14:Q41STOP,ORF1a:T1444N,ORF1b:K1873N,ORF1b:P314L,S:D614G 10 AY.4.2 81.6923 1451.47 3.04131 2.96703 3.11745 90376.4 7.61256e+06 2021-06-22 N:S194L,ORF14:Q41STOP,ORF1a:K1077N,ORF1a:T2158I,ORF1b:K82R,ORF1b:P314L,ORF1b:Q1441H,S:D614G 11 AY.3.3 70.4513 1080.03 3.03045 2.94508 3.11829 518.299 62683.2 2021-09-18 ORF1b:P314L,S:D614G 12 AY.121.1 58.2001 737.696 3.00025 2.89923 3.10479 33282.9 2.40554e+06 2021-09-14 N:R203M,ORF14:G50W,ORF1b:P314L,S:D614G,S:L452R,S:P681R 13 AY.123 94.9239 1958.99 2.99569 2.93353 3.05917 90061.7 7.71581e+06 2021-08-24 ORF1b:P314L,S:D614G 14 AY.127 20.6585 94.3881 2.99103 2.7167 3.29307 179684 1.62064e+07 2021-04-10 ORF1a:G400D,ORF1a:I2501T,ORF1b:H1213Y,ORF1b:P1001L,ORF1b:P314L,ORF1b:S1779I,S:C1253F,S:D614G,S:N439K,S:P25S 15 AY.43.3 67.2424 984.067 2.97564 2.88941 3.06443 172176 1.30063e+07 2021-09-23 N:S194L,ORF14:Q41STOP,ORF1b:A2168T,ORF1b:P314L,S:D614G 16 AY.131 116.195 2934.24 2.97172 2.92165 3.02266 57237.8 3.08291e+06 2021-10-23 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 17 AY.36 17.2906 66.5577 2.97103 2.65046 3.33039 103132 1.36005e+07 2020-12-18 ORF1a:S2517F,ORF1b:P314L,S:D614G 18 AY.123.1 99.1867 2138.69 2.96937 2.91088 3.02903 42088.6 3.34488e+06 2021-10-20 ORF1b:H1213Y,ORF1b:P314L,S:D614G 19 XC 322.385 22571.5 2.96105 2.94304 2.97918 1.00997 588.027 2021-06-01 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:V62L,S:D614G 20 AY.34.2 113.792 2814.2 2.94235 2.89223 2.99334 63182 5.91133e+06 2021-07-22 ORF1b:P314L,S:D614G 21 B.1.640.1 65.8455 943.687 2.9384 2.85255 3.02684 2432.81 340098 2021-10-14 N:G204R,N:R203K,ORF14:G50N,ORF1a:K1817N,ORF1a:T2836I,ORF1b:P314L,S:D614G 22 AY.4.10 83.423 1513.54 2.92111 2.85393 2.98987 5787.45 449291 2021-09-30 N:S194L,ORF14:Q41STOP,ORF1b:L629F,ORF1b:P314L,S:D253G,S:D614G 23 AY.29 64.1358 895.419 2.89661 2.81099 2.98485 420549 4.84507e+07 2021-06-01 N:S194L,ORF14:Q41STOP,ORF1a:K3353R,ORF1b:P314L,S:D614G 24 AY.29.1 56.914 705.539 2.88525 2.7897 2.98408 31250.7 3.09644e+06 2021-07-13 N:M234I,N:S194L,ORF14:Q41STOP,ORF1a:I1912V,ORF1a:K3353R,ORF1a:V751L,ORF1b:P314L,ORF3a:I62T,S:D138Y,S:D614G 25 AY.43.4 36.5732 292.418 2.87204 2.72607 3.02583 11788 2.4894e+06 2021-08-31 N:S194L,ORF14:Q41STOP,ORF1a:A1679V,ORF1a:H110Y,ORF1a:T727I,ORF1b:A2168T,ORF1b:P314L,ORF8:A65S,S:D614G 26 AY.4.8 127.895 3554.39 2.86533 2.823 2.90828 2955.51 406104 2021-07-29 N:S194L,ORF14:Q41STOP,ORF1a:G2118D,ORF1b:P314L,S:D614G,S:P681H 27 AY.46.3 215.561 10092.9 2.84213 2.81735 2.86712 6022.4 598842 2021-07-12 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 28 AY.122.3 72.7113 1150.3 2.83983 2.76713 2.91444 405.86 26461.3 2021-10-18 ORF1b:P314L,ORF1b:Q2425K,S:D614G 29 AY.26.1 374.668 30485.2 2.83467 2.82046 2.84894 2063.12 216649 2021-09-02 ORF1a:A1049V,ORF1a:P1207L,ORF1b:H1213Y,ORF1b:P314L,S:D614G 30 AY.126 35.812 280.445 2.82926 2.68469 2.98162 284237 2.69417e+07 2021-03-09 ORF1a:G400D,ORF1a:G603S,ORF1a:I2501T,ORF1a:M1769I,ORF1b:H1213Y,ORF1b:P314L,ORF9b:G31V,S:D614G,S:N439K 31 AY.43.6 106.943 2485.9 2.82688 2.77771 2.87693 935.529 79822.5 2021-09-14 N:S194L,ORF14:Q41STOP,ORF1a:P3359L,ORF1a:T614I,ORF1a:V306F,ORF1a:V3892I,ORF1b:A2168T,ORF1b:P314L,S:D614G,S:E484K 32 AY.121 29.8281 195.073 2.82525 2.65307 3.00861 192473 1.62734e+07 2021-03-09 N:S194L,ORF14:Q41STOP,ORF1a:T2016I,ORF1a:T2791I,ORF1a:T3287A,ORF1b:L1351F,ORF1b:P314L,S:A701V,S:D614G 33 AY.4.6 57.8563 729.029 2.81713 2.72754 2.90967 12781 2.05294e+06 2021-07-01 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G,S:P681H 34 AY.4.9 67.688 997.126 2.8125 2.73599 2.89114 10530.3 1.60296e+06 2021-07-31 N:S194L,ORF14:Q41STOP,ORF1a:G2118D,ORF1a:N2523T,ORF1a:V438A,ORF1b:P314L,S:D614G,S:P681H 35 AY.4.5 54.2827 641.982 2.80879 2.71397 2.90693 370182 2.46833e+07 2021-06-22 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 36 AY.109 69.6813 1056.6 2.80729 2.73323 2.88336 3756.69 1.31935e+06 2021-07-01 M:I82T,N:M234I,N:S202N,ORF14:G50E,ORF14:V49I,ORF1a:A3837V,ORF1a:D1639E,ORF1a:E102K,ORF1a:E452G,ORF1a:M3655I,ORF1a:N2370K,ORF1a:P1213L,ORF1a:T2283I,ORF1b:F1422L,ORF1b:T730I,ORF1b:V1814F,ORF8:E92K,ORF8:L84S,S:D215G,S:D80Y,S:E484K,S:H655Y,S:P681H,S:Q957H,S:R346K,S:T478R 37 AY.119.2 69.7774 1059.51 2.80644 2.73252 2.88236 2530.22 774511 2021-06-28 ORF1b:P314L 38 AY.43 34.6637 262.857 2.8017 2.65539 2.95607 1.80679e+06 2.62029e+08 2021-06-01 N:S194L,ORF14:Q41STOP,ORF1b:P314L,ORF1b:V1092I,S:D614G 39 AY.119.1 70.3477 1076.86 2.80141 2.72835 2.87643 52490.6 5.06321e+06 2021-10-04 ORF1b:P314L 40 AY.83 194.796 8242.45 2.79866 2.77211 2.82547 274.823 28943.5 2021-07-06 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF9b:R32L,S:A222V,S:A262S,S:D614G,S:P272L 41 AY.4.3 80.7273 1417.43 2.79315 2.72976 2.85801 20883 2.7874e+06 2021-06-09 N:S194L,ORF14:Q41STOP,ORF1a:P1158L,ORF1b:P314L,S:D614G,S:P681R 42 AY.34.1.1 83.1626 1504.11 2.78238 2.72131 2.84482 15808.7 1.75335e+06 2021-07-16 ORF1a:V2047F,ORF1b:P314L,ORF9b:R32L,S:D614G 43 AY.4 37.9084 314.029 2.77599 2.64438 2.91414 998008 1.5307e+08 2021-05-02 N:S194L,ORF14:Q41STOP,ORF1a:S2493I,ORF1b:P314L,S:D614G 44 AY.34.1 65.2442 926.567 2.77452 2.69736 2.85388 51300.1 7.85339e+06 2021-06-09 ORF1b:P314L,S:D614G 45 AY.46.5 72.5378 1144.83 2.77282 2.70341 2.84401 2846.73 460859 2021-06-17 N:S194L,ORF14:Q41STOP,ORF1a:V1291I,ORF1b:P314L,S:D614G,S:T95I 46 AY.25.1.1 416.75 37717.2 2.77208 2.75988 2.78434 10225.8 757429 2021-08-25 ORF1a:E3764D,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,ORF3a:A72S,S:D614G,S:N439K 47 AY.39.1 57.8641 729.226 2.76994 2.6834 2.85928 55684.4 1.21822e+07 2021-06-11 N:S194L,ORF10:I4V,ORF14:Q41STOP,ORF1a:L3086I,ORF1a:P309L,ORF1b:P314L,S:D614G 48 AY.39.2 60.9875 809.86 2.76758 2.68554 2.85212 100718 7.13187e+06 2021-08-17 N:S194L,N:T271I,ORF14:Q41STOP,ORF1a:Q663K,ORF1a:V3660L,ORF1b:P314L,ORF3a:A110S,ORF7a:H47Y,S:D614G 49 B.1.640 141.422 4345.56 2.76579 2.73016 2.80189 15.4581 7186.47 2021-10-14 N:D377Y,N:G204R,N:P383L,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:E180G 50 AY.43.5 88.4747 1702.13 2.76245 2.70586 2.82024 138.087 29009.1 2021-11-01 N:S194L,ORF14:Q41STOP,ORF1a:P3359L,ORF1a:V306F,ORF1a:V3892I,ORF1b:A2168T,ORF1b:P314L,S:D614G 51 AY.43.1 114.632 2855.9 2.75969 2.71599 2.80409 5461.35 539401 2021-07-28 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G,S:T307I 52 AY.43.2 131.534 3759.45 2.75952 2.7214 2.79817 1571.88 265650 2021-07-26 N:S194L,ORF14:Q41STOP,ORF1a:K290N,ORF1b:P314L,S:D614G 53 AY.43.7 128.726 3600.71 2.75855 2.71964 2.79802 65.4673 21822.1 2021-09-06 N:S194L,ORF14:Q41STOP,ORF1a:L1748M,ORF1b:P314L,S:D614G,S:L18F 54 AY.39 35.3821 273.793 2.75464 2.61608 2.90053 13021.5 2.58059e+06 2021-05-13 N:S194L,ORF14:Q41STOP,ORF1a:D1088N,ORF1a:N1871S,ORF1a:V1584M,ORF1b:P314L,ORF3a:D155Y,ORF3a:L108F,ORF7a:T14I,S:D614G 55 AY.4.1 159.173 5504.23 2.75125 2.71991 2.78295 154.293 63987.9 2021-06-22 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 56 AY.4.4 98.3091 2101.05 2.74941 2.69891 2.80085 65579.6 1.11102e+07 2021-07-12 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 57 AY.46.6 39.0573 333.242 2.74839 2.62316 2.87961 124408 1.75804e+07 2021-05-04 N:S194L,N:T334K,ORF14:Q41STOP,ORF1b:P314L,S:D614G 58 AY.111 25.4461 142.409 2.74668 2.55705 2.95036 8243 912054 2021-04-21 N:S202N,ORF14:V49I,ORF1a:L3667F,ORF1a:M3655I,ORF1a:M3752I,ORF8:E92K,ORF8:L84S,ORF9b:R32P,S:F157L,S:P681R,S:Q613H 59 AY.46 60.2749 791.088 2.74654 2.66484 2.83074 188724 2.93631e+07 2021-03-09 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 60 AY.129 21.5246 102.34 2.74104 2.51923 2.98237 51371.2 8.16902e+06 2021-07-01 ORF1a:A2320V,ORF1a:D2819N,ORF1a:I2501T,ORF1a:T1543I,ORF1b:H1213Y,ORF1b:P314L,S:D614G,S:N439K 61 AY.103 37.2064 302.571 2.74019 2.60968 2.87723 105342 1.77319e+07 2021-06-03 N:S202N,ORF14:V49I,ORF1a:T945N,ORF8:L84S 62 AY.39.1.1 170.553 6319.1 2.74008 2.71107 2.76941 74873 1.31792e+07 2021-08-08 N:S194L,ORF14:Q41STOP,ORF1a:K2059R,ORF1a:V665I,ORF1b:P314L,S:D614G 63 AY.39.1.2 162.646 5746.93 2.73974 2.70933 2.77049 154.962 806856 2021-07-31 N:S194L,N:T391I,ORF14:Q41STOP,ORF1a:D2980G,ORF1a:K2059R,ORF1a:V665I,ORF1b:P314L,S:D614G 64 AY.117 23.9646 126.488 2.73869 2.53898 2.95412 2658.38 725682 2021-05-14 N:S202N,ORF14:V49I,ORF8:L84S 65 AY.39.1.3 131.243 3742.81 2.73799 2.7004 2.7761 3.69702 1.08349e+06 2021-07-30 N:D371Y,N:S194L,N:T391I,ORF14:Q41STOP,ORF1a:D2980G,ORF1a:K2059R,ORF1a:V665I,ORF1b:P314L,S:D614G 66 AY.100 39.1668 335.104 2.73006 2.60687 2.85906 138517 1.67957e+07 2021-06-11 ORF1a:D75E,ORF1a:M4071I,ORF1a:P971L,ORF1b:F1757L,ORF8:L84S,ORF8:V62L 67 AY.46.2 60.3172 792.196 2.72013 2.6401 2.80259 2134.66 304069 2021-06-22 N:S194L,N:T205I,ORF14:L52F,ORF14:Q41STOP,ORF1b:P314L,S:D614G 68 AY.130 306.433 20393.3 2.71915 2.70322 2.73517 27.9684 25979.8 2021-10-14 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 69 AY.46.1 71.8988 1124.79 2.71668 2.64956 2.7855 93.4501 23556.1 2021-07-16 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 70 AY.34 65.6047 936.813 2.71646 2.643 2.79197 129199 1.26862e+07 2021-06-01 ORF1a:T4217I,ORF1b:P314L,S:D614G 71 AY.46.4 67.7008 997.502 2.71565 2.64447 2.78874 8991.08 1.38201e+06 2021-05-31 N:S194L,ORF14:Q41STOP,ORF1b:P314L,ORF3a:N119H,S:D614G,S:E654K 72 AY.46.6.1 116.254 2937.21 2.71348 2.67187 2.75574 187.637 22503.1 2021-11-11 N:S194L,ORF14:Q41STOP,ORF1a:C1847R,ORF1a:P1862S,ORF1a:T2007I,ORF1b:P314L,ORF8:V32L,ORF9b:P3L,S:D614G 73 AY.1 73.3109 1169.32 2.70241 2.63728 2.76915 8275.89 2.61831e+06 2021-04-12 N:M234I,N:P365S,N:P383L,N:S197L,ORF14:Q44STOP,ORF1a:F3071Y,ORF1a:H3580Q,ORF1a:K1657E,ORF1a:L4F,ORF1a:T3255I,ORF1b:M620T,ORF1b:P1000L,ORF3a:G196V,ORF3a:S74F,ORF7a:A105S,ORF8:L84S,S:D614G,S:L452R 74 AY.122 29.6033 192.169 2.6998 2.54169 2.86776 1.48406e+06 2.04952e+08 2021-03-09 ORF1b:P314L,S:D614G 75 AY.119 47.7254 496.677 2.69862 2.59951 2.8015 132146 8.30967e+06 2021-05-17 ORF1b:P1427L,ORF1b:Y1464C,ORF8:L84S 76 B.1.633 220.917 10600.4 2.69581 2.67414 2.71767 2.53189 19710.8 2021-04-03 E:T9I,M:A63T,M:Q19E,N:G204R,N:P13L,N:R203K,N:S413R,ORF14:G50N,ORF1a:A3657V,ORF1a:G1307S,ORF1a:P3395H,ORF1a:S135R,ORF1a:T3090I,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:T223I,ORF9b:P10S,S:A67V,S:D405N,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371F,S:S373P,S:S375F,S:S477N,S:T478K,S:T95I,S:Y505H 77 AY.113 40.6623 361.044 2.69367 2.57816 2.81435 31237 4.3831e+06 2021-06-24 N:S202N,ORF14:V49I,ORF1a:Q990L,ORF8:L84S,S:D614G 78 AY.132 47.5249 492.528 2.69317 2.59407 2.79606 270.687 10111.3 2021-11-09 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 79 AY.98 27.2594 163.192 2.69232 2.52203 2.87411 15814 2.21404e+06 2021-05-11 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 80 AY.128 78.6618 1345.93 2.69106 2.63085 2.75266 23618.6 1.20606e+06 2021-07-13 ORF1a:D930N,ORF1a:I2501T,ORF1a:P3371S,ORF1b:H1213Y,ORF1b:P314L,S:D614G,S:N439K,S:V1228L 81 AY.92 39.7535 345.166 2.68517 2.56786 2.80785 109510 1.28246e+07 2021-05-18 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 82 AY.25.1 46.392 469.414 2.68479 2.58398 2.78955 124502 1.64028e+07 2021-06-14 ORF1a:E3764D,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 83 AY.33.1 113.89 2819.06 2.68337 2.64188 2.72551 29042.7 882756 2021-10-26 N:S187L,ORF14:H34Y,ORF1b:P314L,S:D614G 84 AY.120.1 122.525 3262.38 2.68027 2.64178 2.71932 152.906 482880 2021-05-26 ORF1b:P314L,S:D614G 85 AY.124.1 66.2054 954.011 2.67901 2.60828 2.75166 13352.2 723340 2021-07-05 N:S193I,ORF14:V40F,ORF1a:E37D,ORF1a:I2501T,ORF1a:S3732A,ORF1b:G1583S,ORF1b:H1213Y,ORF1b:P314L,S:D614G,S:N439K 86 AY.125 60.8567 806.396 2.67781 2.60102 2.75686 160222 3.149e+07 2021-06-22 ORF1a:G400D,ORF1a:I2501T,ORF1a:M1769I,ORF1b:H1213Y,ORF1b:P314L,ORF9b:G31V,S:D614G,S:N439K 87 AY.133 71.6316 1116.46 2.67724 2.6119 2.74423 423.112 160484 2021-11-02 ORF1a:I2501T,ORF1a:L4064F,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 88 AY.120 76.7455 1281.25 2.67543 2.61447 2.7378 18597.2 5.10026e+06 2021-04-15 ORF1b:P314L 89 AY.91 80.8427 1421.48 2.67153 2.61381 2.73053 16122.4 3.67796e+06 2021-05-27 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 90 AY.41 126.797 3493.67 2.67036 2.63344 2.70779 14398.7 4.35612e+06 2021-06-01 N:S194L,ORF14:Q41STOP,ORF1a:A181T,ORF1a:D1625E,ORF1b:P314L,S:D614G,S:Q675H 91 AY.3 43.1746 406.807 2.66844 2.56163 2.7797 30011.4 1.0831e+07 2021-05-28 N:M234I,N:S194L,ORF14:Q41STOP,ORF1a:I1912V,ORF1a:K3353R,ORF1a:V751L,ORF1b:P314L,ORF3a:I62T,S:D138Y,S:D614G 92 AY.91.1 266.179 15388 2.66789 2.65027 2.68562 29.1158 32460.1 2021-06-23 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 93 AY.124 75.1388 1228.25 2.66441 2.6027 2.72758 14972.8 3.29837e+06 2021-05-11 ORF1a:I2501T,ORF1b:H1213Y,ORF1b:P314L,S:D614G,S:N439K 94 AY.99.2 96.7465 2034.86 2.66092 2.613 2.70972 156001 2.02068e+07 2021-06-21 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A2554V,ORF1b:P314L,S:A222V,S:D614G 95 AY.98.1 45.0879 443.496 2.65953 2.55788 2.76523 64513.8 1.98488e+07 2021-03-16 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:V163I,S:A222V,S:D614G 96 AY.33 42.412 392.627 2.65937 2.55145 2.77185 72768.1 1.81218e+07 2021-03-09 N:S187L,ORF14:H34Y,ORF1a:L454F,ORF1b:P314L,S:D614G 97 AY.25 43.3266 409.664 2.65668 2.55122 2.7665 111145 1.46493e+07 2021-05-10 ORF1a:I2501T,ORF1a:M4241I,ORF1a:T1637I,ORF1b:A1521S,ORF1b:E1977D,ORF1b:H1213Y,ORF1b:P1570L,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,ORF8:E64STOP,S:D614G,S:L189F,S:N439K,S:V772I 98 AY.116.1 79.7794 1384.39 2.65425 2.59656 2.71323 219.868 84108.8 2021-07-01 E:V62F,N:S202N,ORF14:V49I,ORF1a:M3655I,ORF1b:P2162S,ORF8:L84S 99 AY.107 78.3595 1335.62 2.65325 2.59457 2.71326 17716.4 1.69175e+06 2021-05-20 N:S202N,ORF14:V49I,ORF1a:M3655I,ORF8:E92K,ORF8:L84S 100 AY.44 29.6475 192.739 2.65236 2.50017 2.8138 40477.4 1.46082e+07 2021-04-30 N:S194L,ORF14:Q41STOP,ORF1a:L1748M,ORF1b:P314L,ORF1b:T1774I,ORF1b:V2061L,ORF1b:V2564A,S:D614G 101 AY.112 52.7602 606.581 2.652 2.5654 2.74152 15085 5.87039e+06 2021-02-09 N:S202N,ORF14:V49I,ORF1a:L3667F,ORF1a:M3655I,ORF8:E92K,ORF8:L84S,ORF9b:R32P,S:F157L,S:Q613H 102 AY.3.2 224.887 10984.8 2.64571 2.62524 2.66634 3655.46 350164 2021-09-13 N:P344L,ORF1b:P314L,S:D614G,S:S939F 103 AY.72 54.9193 657.083 2.64214 2.55954 2.7274 2173.04 912932 2021-07-30 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF8:H40Y,S:A222V,S:D614G,S:S256L 104 AY.22 223.362 10836.4 2.64158 2.62103 2.66228 58.776 51205.2 2021-06-08 N:T334I,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,S:D614G,S:L189F,S:N439K,S:V772I 105 AY.3.1 98.0528 2090.12 2.63694 2.59055 2.68416 1434.48 841782 2021-06-02 N:S194L,ORF14:Q41STOP,ORF1a:A3615V,ORF1a:I4127V,ORF1a:K3353R,ORF1a:M1769I,ORF1a:M2259I,ORF1a:T484A,ORF1b:K1873N,ORF1b:P314L,S:D614G,S:S477N 106 AY.9.2 30.2032 199.968 2.63456 2.48719 2.79067 150391 6.81731e+07 2021-03-16 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:E910G,ORF1a:T2800I,ORF1b:P314L,S:A222V,S:D614G 107 AY.112.1 355.992 27522.1 2.63404 2.62121 2.64693 8.0935 48963.4 2021-08-25 N:S202N,ORF14:V49I,ORF1b:V972I,ORF8:L84S 108 AY.6 56.5815 697.34 2.634 2.55431 2.71617 33535 5.51514e+06 2021-04-25 ORF1b:P314L,S:D614G 109 AY.5.4 45.558 452.754 2.62823 2.53008 2.73018 16299.4 5.08282e+06 2021-07-01 ORF1b:P314L,ORF3a:V13L,S:D614G 110 AY.114 119.137 3084.58 2.62765 2.5897 2.66617 378.322 372440 2021-06-03 N:S202N,ORF14:V49I,ORF8:L84S,S:D614G 111 AY.118 73.8582 1186.81 2.62641 2.56551 2.68874 18260.6 2.82176e+06 2021-06-07 ORF8:L84S 112 AY.122.1 151.054 4957.3 2.62463 2.59472 2.65488 14672.8 1.8494e+06 2021-06-16 ORF1b:P314L,S:D614G 113 AY.9.2.2 59.1342 761.502 2.62362 2.54795 2.70153 2704.11 798707 2021-08-23 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 114 AY.84 58.8987 755.464 2.62349 2.54754 2.70171 1552.09 594955 2021-08-06 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:P272L 115 AY.116 53.9882 635.057 2.62303 2.54031 2.70844 85807.2 2.20384e+07 2021-05-07 N:A35V,N:S202N,ORF14:V49I,ORF1a:A3529T,ORF1a:V86F,ORF1b:A975V,ORF1b:D1183Y,ORF3a:S171L,ORF8:L84S,ORF9b:R32C,S:H655Y,S:N501T 116 AY.20.1 90.5786 1783.94 2.6214 2.57184 2.67192 465.938 128402 2021-09-20 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,S:D614G,S:L189F,S:N439K,S:V772I 117 AY.5.3 65.576 935.995 2.62063 2.55247 2.69062 120.998 67636.5 2021-07-07 M:A63T,N:D81Y,N:G215V,ORF14:V62L,ORF1a:Y3722C,ORF1b:P314L,ORF1b:S1023G,ORF9b:Q77H,S:D614G,S:H49Y,S:N450K,S:S477N,S:T19I,S:T259R 118 AY.108 65.9498 946.674 2.6206 2.55282 2.69018 2794.71 1.37566e+06 2021-07-01 N:S202N,ORF14:V49I,ORF1a:M3655I,ORF1b:P1727L,ORF8:E92K,ORF8:L84S 119 AY.20 67.5253 992.348 2.61995 2.55376 2.68785 68303.3 1.31428e+07 2021-05-21 N:A182S,ORF14:K28N,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 120 AY.106 89.4676 1740.49 2.61994 2.56983 2.67102 29517.2 5.84757e+06 2021-04-24 N:S202N,ORF14:V49I,ORF1a:M3655I,ORF8:E92K,ORF8:L84S 121 AY.99.1 73.9731 1190.5 2.61977 2.55929 2.68167 3384.88 790663 2021-07-15 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:V1760I,ORF3a:V163I,S:A222V,S:D614G 122 AY.101 80.1863 1398.52 2.61908 2.56327 2.6761 78351.1 7.77098e+06 2021-05-01 N:S202N,ORF14:V49I,ORF8:L84S 123 AY.80 72.4263 1141.32 2.61908 2.55736 2.68228 76.3636 53312.9 2021-07-15 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:P272L 124 AY.85 91.6251 1825.35 2.61888 2.56998 2.66871 298132 2.25319e+07 2021-06-10 N:A220V,N:H145Y,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:P272L 125 AY.5.2 104.032 2352.5 2.61816 2.57507 2.66197 32416.6 2.55273e+06 2021-06-09 ORF1b:P314L,S:D614G 126 AY.105 100.553 2197.98 2.61815 2.57358 2.66349 225.962 111224 2021-06-14 N:S202N,ORF14:V49I,ORF1a:M3655I,ORF1a:T1760I,ORF8:E92K,ORF8:L84S 127 AY.79 85.3629 1584.64 2.61813 2.56571 2.67162 148707 1.40603e+07 2021-06-06 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:G519S,ORF1b:P314L,ORF3a:T223N,S:A222V,S:D614G,S:Q1071L 128 AY.104 105.713 2429.08 2.61766 2.57526 2.66075 2525.51 698636 2021-07-19 N:S202N,ORF14:V49I,ORF1a:M3655I,ORF8:E92K,ORF8:L84S 129 AY.88 90.2752 1772.02 2.61763 2.56806 2.66816 10554.5 2.07556e+06 2021-06-15 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:P959S,ORF1b:D1973G,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:E484K,S:L1063F,S:P272L,S:T572I 130 AY.102 137.421 4103.24 2.61707 2.58442 2.65014 138893 8.55054e+06 2021-06-17 N:G18V,N:S202N,ORF14:V49I,ORF8:L84S,ORF9b:V15L 131 AY.32 137.652 4117.09 2.61678 2.58418 2.64978 2041.42 1.15289e+06 2021-06-01 ORF1b:M657I,ORF1b:P314L,S:D614G 132 AY.87 148.217 4772.89 2.61654 2.58626 2.64717 1288.55 90991 2021-05-21 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:P272L 133 AY.90 156.413 5315.08 2.61644 2.58774 2.64546 51.7778 15804.4 2021-05-29 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF8:V62L,S:A222V,S:D614G,S:L54F 134 AY.78 187.786 7660.07 2.61637 2.59245 2.64052 49.917 47509.8 2021-07-12 N:A220V,N:A252S,ORF10:V30L,ORF14:L67F,ORF1a:L3338F,ORF1a:M3655V,ORF1b:P314L,S:A222V,S:D614G 135 AY.99 93.5163 1901.39 2.61617 2.56836 2.66487 599.947 457448 2021-05-04 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:V163I,S:A222V,S:D614G 136 AY.76 229.741 11464 2.61594 2.59638 2.63565 3321.94 749768 2021-06-17 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 137 AY.93 149.556 4859.54 2.61593 2.58594 2.64627 18.2875 86470.2 2021-06-07 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:S2406L,ORF1b:P314L,ORF1b:R2257S,S:A222V,S:D614G 138 AY.94 131.73 3770.63 2.61563 2.58161 2.65009 41911.7 3.60919e+06 2021-05-24 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:S2406L,ORF1b:P314L,ORF1b:R2257S,S:A222V,S:D614G 139 AY.73 59.5117 771.231 2.61549 2.54079 2.69239 10059.7 1.73633e+06 2021-07-12 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:S961L,S:A222V,S:D614G,S:P1162S 140 AY.102.2 278.706 16870.2 2.61546 2.59933 2.63169 6235.77 456267 2021-08-09 N:S202N,ORF14:V49I,ORF1a:V3718F,ORF3a:A99S,ORF8:L84S,S:D614N 141 AY.5.5 107.829 2527.22 2.61514 2.57366 2.6573 253.498 378483 2021-06-02 ORF1b:D1292G,ORF1b:P314L,ORF3a:V13L,S:D614G 142 AY.86 153.708 5132.91 2.61479 2.58563 2.64428 1.46791 55540.4 2021-05-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:V1110L,S:A222V,S:D614G,S:P272L 143 AY.82 243.016 12826.8 2.6146 2.59612 2.63321 301.236 2.74222e+06 2021-05-10 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:T2376I,ORF3a:R68I,S:A222V,S:A262S,S:D614G,S:P272L 144 AY.102.1 260.869 14780.2 2.61438 2.59716 2.63171 6695.91 508732 2021-08-14 N:S202N,ORF14:V49I,ORF8:L84S 145 AY.81 145.435 4595.5 2.61419 2.5834 2.64535 6.62756 24798.1 2021-06-11 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:P272L 146 AY.45 127.3 3521.42 2.61354 2.5784 2.64915 50000.9 1.02286e+07 2021-05-20 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 147 AY.5.1 248.703 13434.1 2.61353 2.59549 2.6317 12.3916 15241.9 2021-06-11 N:S194L,ORF14:Q41STOP,ORF1a:K2511N,ORF1b:P314L,S:D614G 148 AY.21 130.46 3698.34 2.6125 2.57824 2.64722 10762.2 1.2976e+06 2021-06-09 N:T334I,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,S:D614G,S:G1219V,S:L189F,S:N439K,S:V772I 149 AY.5 50.5993 558.064 2.61193 2.52455 2.70234 122517 2.4866e+07 2021-04-25 N:S194L,N:T393I,ORF14:Q41STOP,ORF1b:P314L,S:D614G 150 AY.110 93.4163 1897.33 2.61074 2.56308 2.65927 201.82 165114 2021-05-18 N:S202N,ORF14:V49I,ORF1a:L3667F,ORF1a:M3655I,ORF8:E92K,ORF8:L84S,S:F157L,S:P681R,S:Q613H 151 AY.120.2.1 130.803 3717.8 2.60453 2.57058 2.63892 698.588 708544 2021-06-18 ORF1a:G894S,ORF1b:P314L,S:D1146H,S:D614G 152 AY.120.2 151.42 4981.32 2.60452 2.57517 2.63421 0.185759 43811.1 2021-05-17 N:G18C,ORF1b:P314L,ORF9b:L14F,S:D614G 153 AY.122.2 82.4779 1479.48 2.59058 2.53756 2.64471 1320.12 1.34123e+06 2021-07-07 ORF1b:P314L,S:D614G 154 AY.23.2 135.687 4000.44 2.5894 2.55707 2.62214 187.364 228822 2021-08-03 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:E1977D,ORF1b:H1213Y,ORF1b:P1570L,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,S:D614G,S:L189F,S:N439K,S:V772I 155 AY.23.1 120.042 3131.59 2.58918 2.55267 2.6262 314.003 535783 2021-08-24 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:E1977D,ORF1b:H1213Y,ORF1b:P1570L,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,S:D614G,S:L189F,S:N439K,S:V772I 156 AY.23 95.8005 1995.3 2.58901 2.54335 2.63548 459397 5.12206e+07 2021-01-08 N:P67S,N:T334I,ORF1a:I2501T,ORF1a:M4241I,ORF1a:R73C,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,ORF8:L60F,S:D614G,S:L189F,S:N439K,S:V772I 157 AY.7.2 70.1952 1072.21 2.58846 2.52638 2.65206 1441.97 1.54153e+06 2021-07-01 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:M2667I,ORF1b:P314L,S:A222V,S:D614G 158 AY.7.1 87.6395 1670.18 2.58418 2.53451 2.63482 4398.25 1.66714e+06 2021-06-23 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 159 AY.7 167.513 6095.94 2.58409 2.55799 2.61046 820.136 498041 2021-05-07 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:I1539T,ORF1b:P314L,S:A222V,S:D614G 160 AY.42 22.6987 113.637 2.58088 2.39483 2.78138 69216.3 2.0782e+07 2021-01-15 N:S194L,ORF14:Q41STOP,ORF1b:P314L,ORF1b:T1511I,S:D614G,S:E484K,S:V213G 161 B.1.640.2 105.434 2416.28 2.57702 2.53592 2.61879 0.719243 474.636 2021-11-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 162 AY.9.2.1 268.445 15651 2.56902 2.5529 2.58523 1.68696 18845.8 2021-07-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:M1237I 163 AY.77 170.505 6315.55 2.56696 2.54168 2.5925 7.44895 28980.5 2021-06-11 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:V2073L,S:A222V,S:D614G 164 AY.95 105.75 2430.79 2.56389 2.52335 2.60507 28362 3.83719e+06 2021-05-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:Q3777R,ORF1a:S2406L,ORF1b:P314L,ORF1b:R2257S,S:A222V,S:D614G 165 AY.51 47.5095 492.211 2.53113 2.44421 2.62114 616.374 542615 2021-07-15 ORF1b:P314L,ORF1b:V2691F,ORF3a:V13L,S:D614G,S:G257D 166 AY.47 69.5309 1052.05 2.53074 2.47105 2.59188 7401.63 2.15799e+06 2021-06-06 N:S194L,ORF14:Q41STOP,ORF1a:D4165G,ORF1b:A1609S,ORF1b:P314L,S:D614G 167 AY.26 59.3347 766.664 2.51283 2.44408 2.58351 22171.5 1.21353e+07 2021-04-21 N:G34W,ORF1a:I2501T,ORF1a:L320F,ORF1a:M4241I,ORF1a:V365F,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V2172I,ORF1b:V711I,S:D614G,S:N439K 168 AY.96 198.837 8587.89 2.50232 2.4818 2.52302 202.536 3.05358e+07 2021-07-02 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:F3957L,ORF1b:P314L,S:A222V,S:D614G 169 AY.35 84.2402 1543.29 2.48889 2.44128 2.53744 217.703 137415 2021-06-11 ORF1b:L1220P,ORF1b:P314L,S:D614G 170 AY.42.1 121.451 3205.49 2.47067 2.43808 2.5037 4581.31 600686 2021-07-19 N:S194L,ORF14:Q41STOP,ORF1a:A566T,ORF1a:T3032I,ORF1b:P314L,S:D614G 171 AY.65 53.7809 630.204 2.45999 2.38769 2.53447 768.562 2.06013e+06 2021-05-10 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:Y1920H,ORF1b:P314L,ORF1b:V2178F,S:A222V,S:D614G 172 AY.9 29.2681 187.879 2.45994 2.32874 2.59854 4787.65 7.54344e+06 2021-04-15 N:A220V,N:D377Y,ORF10:V30L,ORF14:L67F,ORF1a:R24C,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:P272L 173 AY.27 35.5157 275.852 2.45 2.34232 2.56263 268.569 450090 2021-04-21 ORF1a:I2010T,ORF1b:P314L,S:D614G 174 AY.2 137.356 4099.39 2.4468 2.41858 2.47536 11.8757 128839 2021-05-22 ORF1a:I2501T,ORF1a:M4241I,ORF1a:T4088I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,ORF8:I9T,S:D614G,S:N439K 175 B.1.617.2 8.05595 15.4041 2.4406 2.00377 2.97266 948452 2.50579e+08 2020-12-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2554V,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 176 AY.60 68.7058 1027.28 2.43835 2.38268 2.49533 591.628 1.54781e+06 2021-07-02 N:A220V,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 177 AY.28 99.0231 2131.65 2.42355 2.3853 2.4624 1528.52 517898 2021-06-22 ORF1b:P314L,S:D614G 178 AY.74 85.3929 1585.76 2.41783 2.37378 2.46271 158.308 436859 2021-04-28 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 179 AY.75 44.9072 439.963 2.41432 2.3315 2.50008 5984.41 3.64613e+06 2021-04-08 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1a:S166G,ORF1b:P314L,S:A222V,S:D614G 180 AY.56 158.609 5465.34 2.40931 2.38568 2.43318 2.58897 7892.46 2021-06-08 N:S190G,ORF1b:P314L,ORF3a:V13L,S:D614G 181 AY.64 59.8333 779.568 2.40426 2.34242 2.46775 11.9422 81359.8 2021-05-24 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:L820F,ORF1b:P314L,S:A222V,S:D614G 182 AY.4.7 64.5245 906.282 2.40297 2.34563 2.46171 1352.44 3.36242e+06 2021-07-01 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G,S:P681H 183 AY.37 67.6761 996.775 2.40259 2.34791 2.45854 18930.7 2.50674e+06 2021-05-31 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 184 AY.69 120.887 3175.82 2.4015 2.37076 2.43263 36210.1 1.96146e+06 2021-06-17 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 185 AY.70 86.5098 1627.45 2.39541 2.35281 2.43877 2354.78 6.73866e+06 2021-04-24 N:A220V,N:P365S,ORF10:R24L,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:K1045N 186 AY.57 68.6427 1025.39 2.39339 2.33993 2.44806 41383.8 7.36772e+06 2021-05-01 ORF1a:K292N,ORF1b:P314L,ORF3a:V13L,S:D614G 187 AY.61 69.4381 1049.25 2.39273 2.33991 2.44674 120.402 616485 2021-05-26 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 188 AY.19 310.073 20880.6 2.3927 2.38077 2.40469 28.3982 67840.2 2021-05-30 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K 189 AY.59 64.0736 893.689 2.39268 2.3355 2.45126 114385 5.51437e+07 2021-05-13 N:D401Y,ORF1a:G442S,ORF1b:P314L,ORF3a:V13L,S:D614G 190 AY.71 69.8682 1062.26 2.39225 2.33978 2.4459 488.433 739591 2021-05-04 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1a:E754D,ORF1b:P314L,S:A222V,S:D614G 191 AY.62 78.9593 1356.12 2.39214 2.34566 2.43955 31.6612 104609 2021-05-18 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 192 AY.66 86.7016 1634.67 2.39124 2.34891 2.43434 648.656 4.36999e+06 2021-05-07 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D1163Y,S:D614G,S:G1167V 193 AY.58 101.128 2223.15 2.39089 2.35456 2.42778 45.367 247119 2021-03-16 ORF1b:P314L,ORF3a:V13L,ORF8:A51V,S:D614G 194 AY.75.3 98.5321 2110.58 2.39027 2.35302 2.42812 8.3125 102751 2021-06-07 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1a:N3937S,ORF1a:T1543I,ORF1b:P314L,ORF1b:S2198I,S:A222V,S:D614G 195 AY.75.2 153.571 5123.79 2.39003 2.36606 2.41424 14068.8 2.30589e+06 2021-06-30 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:R122I,S:A222V,S:D614G 196 AY.67 133.701 3884.23 2.38984 2.36234 2.41767 12.4432 117344 2021-05-18 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1a:A3571V,ORF1b:P314L,S:A222V,S:D1163Y,S:D614G,S:G1167V 197 AY.38 104.913 2392.52 2.38967 2.35468 2.42517 23089.5 5.07044e+06 2021-04-03 N:E367D,N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 198 AY.63 235.148 12009.8 2.38905 2.37338 2.40482 235.709 1.89285e+07 2021-06-25 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 199 AY.24 110.287 2643.66 2.38894 2.35567 2.42268 37429.8 9.73513e+06 2021-05-03 N:M234I,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:E1977D,ORF1b:H1213Y,ORF1b:P1570L,ORF1b:P314L,ORF1b:P976L,ORF1b:V711I,ORF3a:Q185H,ORF8:E64STOP,S:D614G,S:L189F,S:N439K,S:V772I 200 AY.11 309.688 20828.7 2.38867 2.37677 2.40063 1.77431 10005.8 2021-05-03 M:I82S,N:D22Y,N:S202N,ORF14:V49I,ORF1a:A3209V,ORF1a:M3655I,ORF1a:V86F,ORF1b:I1987V,ORF1b:M1499I,ORF7a:V71L,ORF8:E92K,ORF8:L84S,ORF9b:Q18H,S:F565L,S:H655Y,S:N501Y,S:Y449H 201 AY.68 99.4737 2151.07 2.38839 2.35155 2.42581 80649.2 1.05602e+07 2021-06-16 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 202 AY.55 158.213 5438.07 2.38793 2.36471 2.41138 1599.82 484162 2021-04-23 N:S194L,ORF14:Q41STOP,ORF1a:K1655N,ORF1a:R3480S,ORF1b:P314L,ORF3a:T175I,ORF3a:V13L,ORF3a:V202I,S:D614G 203 AY.14 66.7922 970.96 2.38476 2.33029 2.44051 63526.1 1.14615e+07 2021-04-22 ORF1a:I2501T,ORF1a:L4064F,ORF1a:M4241I,ORF1a:S1733F,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K,S:V143F 204 AY.10 95.881 1998.65 2.37028 2.33272 2.40844 0.499718 89989.6 2021-04-16 ORF1a:D75E,ORF1a:P971L,ORF1b:F1757L,ORF8:L84S,ORF8:V62L 205 AY.17 216.678 10197.7 2.36914 2.35247 2.38594 1.05252 15830.9 2021-05-12 ORF1a:I2501T,ORF1a:M4241I,ORF1a:S2552A,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,S:D614G,S:N439K,S:V70I 206 AY.54 64.9685 918.771 2.33035 2.27723 2.38471 199.934 896506 2021-05-21 M:I52T,ORF1a:N3537D,ORF1b:P314L,ORF3a:T175I,ORF3a:V13L,S:D614G 207 AY.15 131.781 3773.56 2.32577 2.29955 2.3523 2.95671 42222.6 2021-05-01 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V1706I,ORF1b:V711I,S:D614G,S:N439K 208 AY.50 177.479 6842.5 2.30987 2.29068 2.32922 42.5629 586320 2021-06-09 ORF1b:P314L,ORF1b:V1271L,ORF3a:V13L,S:D614G 209 B.1.243.2 194.341 8203.96 2.30749 2.29 2.32511 0.60238 8762.69 2021-05-25 M:T175M,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 210 AY.49 184.083 7361.02 2.30579 2.28736 2.32437 2.26018 43280.8 2021-05-17 M:A2V,N:S194L,ORF14:Q41STOP,ORF1a:A2388V,ORF1a:E754D,ORF1b:P314L,S:D614G 211 AY.16 41.3802 373.842 2.30271 2.22209 2.38626 8719.7 5.41242e+06 2021-04-08 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,ORF3a:G172D,ORF3a:K67N,S:D614G,S:N439K 212 AY.16.1 82.0517 1464.25 2.29815 2.25732 2.33972 17.7489 117229 2021-07-01 ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V711I,ORF7b:A15S,S:D614G,S:G1223S,S:N439K,S:V70I 213 AY.13 84.3905 1548.79 2.29805 2.25834 2.33845 14.6652 235831 2021-04-30 N:S194L,ORF14:Q41STOP,ORF1a:I2501T,ORF1b:H1213Y,ORF1b:M1573I,ORF1b:P314L,S:D614G,S:N439K 214 AY.53 111.441 2699.2 2.29591 2.26584 2.32637 200.473 4.59988e+06 2021-05-08 ORF1b:A88V,ORF1b:P314L,ORF3a:V13L,S:D614G 215 AY.52 155.728 5268.71 2.29565 2.2741 2.31741 0.219584 25153.3 2021-05-29 ORF1b:A941V,ORF1b:P314L,ORF3a:V13L,S:D614G 216 AY.8 229.973 11487.1 2.29523 2.28062 2.30993 0.0015705 1322.05 2021-04-22 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:I2273S,ORF1b:P314L,ORF1b:V1271L,ORF7a:E121V,S:A222V,S:D614G 217 AY.18 157.03 5357.1 2.29454 2.2732 2.31609 0.000426027 1358.95 2021-05-01 ORF1a:A702S,ORF1a:I2501T,ORF1a:M4241I,ORF1b:A1521S,ORF1b:H1213Y,ORF1b:P314L,ORF1b:V1320M,ORF1b:V711I,S:D614G,S:N439K 218 C.1.2 71.6943 1118.41 2.25385 2.20926 2.29935 28.1014 232018 2021-06-07 ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 219 BB.1 64.5081 905.822 2.22741 2.17926 2.27661 2565.92 1.37138e+06 2021-06-13 E:V49L,ORF1a:M902V,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 220 B.1.621.2 268.062 15606.4 2.22379 2.21215 2.23548 7.64006 6711.47 2021-07-15 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G496S,S:H655Y,S:L452R,S:L981F,S:N501Y,S:N679K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 221 AY.48 56.0822 685.123 2.1899 2.13681 2.24431 3.02126 81248.2 2021-05-19 N:S194L,ORF14:Q41STOP,ORF1b:P314L,S:D614G 222 B.1.637.1 52.6965 605.122 2.18315 2.12712 2.24066 0.0366823 855.149 2021-11-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 223 AY.40 113.471 2798.39 2.15449 2.12912 2.18017 17634.2 5.76315e+06 2021-07-13 N:P13L,N:S194L,N:S202G,ORF14:Q41STOP,ORF1a:A181T,ORF1a:A2344V,ORF1a:D3222N,ORF1a:G3971S,ORF1a:H1500Y,ORF1a:K3353R,ORF1a:Q3777R,ORF1a:S2926F,ORF1a:T3646A,ORF1b:E1728D,ORF1b:P314L,ORF3a:S171L,ORF9b:P10S,S:D614G,S:D936H,S:N501T,S:N679K,S:N751K,S:T478K 224 AY.30 75.1509 1228.65 2.11797 2.08135 2.15524 17193.9 1.06486e+07 2021-05-13 ORF1a:T1840I,ORF1b:P314L,ORF8:P30L,S:D614G 225 AY.31 179.422 6993.13 2.11481 2.09945 2.13028 10.298 105003 2021-07-01 N:T366R,ORF1b:P314L,S:D614G 226 P.1.12.1 90.6699 1787.53 2.08474 2.05552 2.11437 60.729 257410 2021-08-03 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:P314L,ORF1b:T76I,ORF3a:Q57H,ORF6:M19I,S:D614G,S:T1116N 227 B.1.621 48.4459 511.731 2.05693 2.00439 2.11085 7010.97 1.48067e+07 2021-02-26 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G496S,S:H655Y,S:L981F,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 228 B.1.621.1 78.4334 1338.14 2.04113 2.00915 2.07361 10275.4 1.03313e+06 2021-04-24 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G496S,S:H655Y,S:L452R,S:L981F,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 229 BB.2 113.286 2789.24 2.03181 2.00988 2.05398 3.11209 10079.8 2021-06-26 ORF1a:T265I,ORF1b:K1447N,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 230 B.1.632 84.5072 1553.08 2.0126 1.98397 2.04165 0.190993 91752.5 2021-06-05 E:T9I,M:A63T,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:G1307S,ORF1a:P3395H,ORF1a:S135R,ORF1a:T3090I,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:T223I,ORF9b:P10S,S:D405N,S:D614G,S:D796Y,S:E484A,S:G339D,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371F,S:S373P,S:S375F,S:S477N,S:T19I,S:T478K,S:V213G,S:Y505H 231 P.1.7.1 57.4448 718.724 1.92914 1.89163 1.96739 191.99 3.23742e+06 2021-04-05 N:M234I,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R 232 P.1.9 106.265 2454.52 1.92499 1.90474 1.94545 0.7291 19014.3 2021-05-11 N:M234I,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P104L,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R,S:T859N 233 P.1.8 72.5346 1144.73 1.90474 1.876 1.93393 0.0489229 20990.7 2021-06-11 N:M234I,N:T205I,ORF14:L52F,ORF1a:A1679S,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P104L,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R,S:T859N 234 XB 31.8513 222.199 1.87954 1.81706 1.94416 0.335866 770997 2021-02-27 ORF1a:E1209D,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 235 B.1.639 118.029 3027.54 1.87404 1.85712 1.89113 5.75886e-05 1918.65 2021-02-08 N:D377Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:H1141Y,ORF1a:P1054L,ORF1b:P314L,S:D614G,S:G1171V 236 P.1.7 51.9377 587.875 1.87132 1.83323 1.91021 59.7353 1.95137e+06 2021-04-06 N:M234I,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R 237 P.1.4 90.783 1791.99 1.87089 1.84901 1.89302 18.7052 249111 2021-04-18 N:P199L,ORF14:Q46STOP,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 238 P.1.5 307.918 20591.4 1.86984 1.86337 1.87633 0.00275666 2706.43 2021-04-16 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF3a:P42L,ORF3a:Q57H,S:A701V,S:D614G 239 P.1.6 121.05 3184.38 1.8685 1.85213 1.88502 5.403 92366 2021-04-29 N:M234I,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:D614G 240 B.1.630 74.44 1205.55 1.86423 1.83785 1.89099 17.4108 195431 2021-05-07 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 241 P.1.10.1 232.158 11706.4 1.85247 1.84413 1.86086 0.00163948 6183.66 2021-05-10 N:T24I,ORF1a:K798N,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:D936Y 242 C.36.3.1 72.5949 1146.63 1.84658 1.82026 1.87328 0.0466376 4.06163e+06 2021-04-15 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 243 C.37.1 64.2993 899.982 1.84519 1.81557 1.8753 0.0144678 28135.6 2021-04-08 ORF1a:T265I,ORF1b:A2431V,ORF1b:P314L,ORF1b:Q813H,ORF3a:Q57H,S:D614G 244 P.1.11 119.367 3096.5 1.84478 1.82878 1.86093 0.000386755 10395 2021-06-21 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:D936Y 245 B.1.631 73.2961 1168.85 1.83895 1.81319 1.86508 0.0143541 32970.8 2021-04-19 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:G339D,S:G446S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T547K,S:T95I 246 P.1.2 58.2771 739.645 1.8381 1.8058 1.87097 2778.99 2.89799e+06 2021-02-09 N:S190I,ORF14:V37F,ORF1a:D147G,ORF1a:G400S,ORF1a:K3353R,ORF1a:T265I,ORF1a:V3718F,ORF1b:K2538R,ORF1b:P1567L,ORF1b:P314L,ORF3a:Q57H,S:D614G 247 B.1.626 53.3205 619.492 1.82886 1.7941 1.86429 0.0159703 105330 2021-04-30 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 248 B.1.415.1 98.3754 2103.88 1.82275 1.80401 1.84168 0.00428395 29260.3 2021-05-17 N:G204R,N:I292T,N:Q70R,N:R203K,ORF14:G50N,ORF1a:P1640L,ORF1a:P3371S,ORF1a:P3395S,ORF1a:V3718A,ORF1b:P314L,ORF6:I33T,ORF9b:K67E,S:D614G,S:E484K,S:I210V,S:P9L,S:V445A 249 P.1.17.1 46.1947 465.445 1.81048 1.77158 1.85024 0.293319 126686 2021-06-25 N:S190I,ORF14:V37F,ORF1a:K3353R,ORF1a:T265I,ORF1a:V3718F,ORF1b:P314L,ORF3a:Q57H,S:D614G 250 P.1.17 40.0216 349.812 1.80132 1.75715 1.84659 0.164426 1.1139e+06 2021-03-01 N:S190I,ORF14:V37F,ORF1a:K3353R,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 251 P.1.15 35.8377 280.845 1.80106 1.75183 1.85167 1020.4 1.78318e+07 2021-03-10 ORF1a:K3353R,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 252 P.1.12 34.7215 263.729 1.80071 1.74996 1.85295 131.527 4.71125e+06 2021-02-18 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF9b:A57V,S:D614G,S:D936Y 253 P.1.3 326.401 23137.3 1.79766 1.79222 1.80312 0.00404322 10981.6 2021-04-26 N:S190I,ORF14:V37F,ORF1a:K3353R,ORF1a:L4064I,ORF1a:P971S,ORF1a:T265I,ORF1b:P314L,ORF1b:T1339I,ORF3a:G174D,ORF3a:Q57H,ORF8:G8V,S:D614G 254 P.1.10 95.69 1990.71 1.79731 1.77883 1.81598 929.115 367133 2021-02-19 ORF1a:A2345V,ORF1a:E647D,ORF1a:P2144L,ORF1a:T265I,ORF1b:P314L,ORF1b:T17I,ORF3a:Q57H,S:D614G,S:D936Y 255 P.1.10.2 333.252 24118.6 1.79694 1.79162 1.80228 0.000362685 4977.93 2021-05-23 ORF1a:Q946H,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:D75V,S:D614G,S:D936Y 256 P.1.13 139.019 4199.22 1.79689 1.78416 1.80972 0.00040442 290518 2021-03-12 ORF1a:K3353R,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 257 P.1.1 65.6379 937.76 1.79609 1.76926 1.82332 0.0165666 1.31429e+06 2021-01-20 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:V32I,S:D614G,S:D936Y 258 P.1.14 52.8375 608.353 1.79564 1.7624 1.82951 20.0459 795316 2021-01-15 E:S68F,N:I84V,N:R203S,ORF14:G50V,ORF1a:K3353R,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF3a:S40L,ORF7a:V71L,S:D614G,S:E484K,S:G1219C,S:G142C,S:H655Y,S:N440T,S:N460K,S:P681H,S:T415A,S:T859N,S:T95I,S:W64R 259 C.37 44.9322 440.451 1.78543 1.74707 1.82465 915.23 6.04144e+07 2021-01-17 N:T379I,ORF1a:L1556I,ORF1a:T265I,ORF1b:L1218I,ORF1b:L1681F,ORF1b:P314L,ORF3a:Q57H,S:D614G 260 P.1.16 46.1565 464.679 1.78203 1.74489 1.81997 10.9716 1.13603e+07 2021-02-09 N:S190I,ORF14:V37F,ORF1a:K3353R,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 261 C.36.3 36.1151 285.182 1.77855 1.73148 1.82689 77862.4 5.07546e+06 2021-02-28 N:P207S,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 262 B.1.629 124.283 3356.6 1.76203 1.74861 1.77555 0.000359663 54075.9 2021-03-15 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 263 P.1 13.1922 39.3127 1.7494 1.62956 1.87805 72156 8.69384e+07 2020-12-16 ORF1a:P3371S,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:D936Y 264 AZ.2.1 137.55 4110.95 1.73767 1.72605 1.74937 0.000764449 108302 2021-04-13 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 265 AZ.2 43.5449 413.784 1.73245 1.69634 1.76932 3949.86 2.108e+06 2021-03-05 M:D209Y,N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 266 C.38 91.1874 1807.97 1.6845 1.66865 1.7005 2589.51 579572 2021-03-29 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 267 Q.5 75.5808 1242.72 1.67521 1.65645 1.69418 0.000756143 15899.6 2021-06-28 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:F3677L,ORF1a:G3676S,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:E484K,S:T95I 268 B.1.634 63.8504 887.485 1.67323 1.65113 1.69562 0.000614469 133221 2021-02-27 E:T9I,M:A63T,M:Q19E,N:G204R,N:P13L,N:R203K,N:S413R,ORF14:G50N,ORF1a:G1307S,ORF1a:L3027F,ORF1a:L3201F,ORF1a:P3395H,ORF1a:S135R,ORF1a:T3090I,ORF1a:T3255I,ORF1a:T842I,ORF1b:I1566V,ORF1b:P314L,ORF1b:R1315C,ORF1b:T2163I,ORF3a:T223I,ORF6:D61L,ORF9b:P10S,S:D405N,S:D614G,S:D796Y,S:E484A,S:G339D,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R408S,S:S371F,S:S373P,S:S375F,S:S477N,S:T19I,S:T376A,S:T478K,S:V213G,S:Y505H 269 Q.7 73.5797 1177.9 1.67243 1.65326 1.69181 0.000112843 1.48879e+06 2021-02-22 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:T95I 270 Q.8 66.7829 970.692 1.65741 1.63694 1.67815 0.00375285 1.00297e+06 2021-04-17 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:S477N,S:T95I 271 B.1.619 67.4894 991.295 1.6521 1.63205 1.6724 0.00137751 811183 2021-02-11 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:G3676S,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 272 AT.1 98.5414 2110.98 1.65146 1.63772 1.66531 229.312 770905 2021-03-02 N:P13L,N:S197L,ORF14:Q44STOP,ORF1a:F3071Y,ORF3a:G196V,ORF8:L84S,ORF9b:P10S 273 AZ.1 91.981 1839.54 1.65128 1.63657 1.66612 1.03087e-05 17882.4 2021-03-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A2554V,ORF1a:T2181I,ORF1b:P314L,S:A222V,S:D614G 274 B.1.1.318 59.3009 765.791 1.65092 1.62817 1.67398 26051.6 7.70802e+06 2021-01-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 275 AZ.3 107.369 2505.72 1.65076 1.63816 1.66345 5.61909e-06 64160.8 2021-03-06 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 276 AZ.6 119.827 3120.39 1.65059 1.6393 1.66195 2.44398e-12 58.4803 2021-03-12 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 277 B.1.619.1 66.9921 976.769 1.63176 1.61239 1.65135 0.0271917 403301 2021-04-04 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,N:S33G,ORF14:G50N,ORF1a:A2710T,ORF1a:G3676S,ORF1a:I3758V,ORF1a:K856R,ORF1a:L3674F,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:E27V,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:V70I,S:Y505H 278 B.1.1.524 110.948 2675.4 1.62439 1.61286 1.63601 4735.29 1.32727e+06 2021-02-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,ORF9b:G38D,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 279 Q.2 160.667 5608.03 1.61629 1.60845 1.62416 5.5159e-06 267391 2021-01-06 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:E484K,S:T95I 280 B.1.637 11.6682 31.0331 1.61506 1.51068 1.72664 0.00892042 1.89005e+06 2020-12-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:M584V,ORF1b:P314L,S:D614G 281 P.5 127.292 3521.02 1.61343 1.6036 1.62331 1.34536e-08 4709.79 2021-03-15 N:M234I,N:T205I,ORF14:L52F,ORF1a:A1679S,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P104F,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:T11I,ORF9b:P17L,S:D614G,S:D80G,S:F157S,S:L452R,S:T859N 282 AZ.5 27.3624 164.415 1.61148 1.56647 1.65779 2781.13 5.70752e+06 2021-03-07 N:A220V,N:R319H,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:R2613N,ORF3a:A23S,S:A222V,S:D614G,S:L18F 283 B.1.1.523 34.2092 256.054 1.60629 1.57059 1.6428 11434 3.15321e+06 2021-03-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 284 Q.3 16.3606 59.7379 1.60569 1.53204 1.68287 4.88584e-05 291621 2021-01-07 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:F3677L,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:E484K,S:T95I 285 AZ.4 114.625 2855.51 1.60389 1.59321 1.61465 1.01934e-05 200003 2021-02-19 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:P2018S,ORF1b:P314L,S:A222V,S:D614G,S:L18F,S:Q23H 286 Q.1 70.5837 1084.09 1.60322 1.58594 1.6207 18936.5 6.44848e+06 2021-02-19 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,S:A701V,S:D253G,S:D614G,S:T95I 287 B.1.1.7 12.7183 36.6311 1.60054 1.50749 1.69935 440456 1.15654e+09 2020-11-02 N:D3L,N:G204R,N:L139F,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G1125C,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4265I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 288 Q.6 50.4982 555.842 1.5971 1.57332 1.62124 0.000147757 137195 2021-03-16 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:F3677L,ORF1a:G3676S,ORF1a:L3201P,ORF1a:S3675T,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:E484K,S:T95I 289 A.30 118.529 3053.18 1.59377 1.58367 1.60393 1.16204e-07 926.604 2021-02-13 ORF10:R24C,ORF3a:G251V 290 B.1.575.2 65.3349 929.14 1.58306 1.56523 1.6011 0.011784 22903.2 2021-05-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:E386K,ORF1b:P314L,S:D614G 291 A.2.5.3 61.0671 811.969 1.57824 1.55938 1.59733 0.0965822 1.00583e+06 2021-05-01 ORF3a:G251V 292 B.1.351.5 27.2759 163.388 1.56669 1.52588 1.60859 0.00592727 241778 2021-05-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T794I,S:D614G 293 B.1.638 145.136 4576.68 1.56495 1.55723 1.57271 8.17933e-10 5213.17 2021-06-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:N704H,ORF1b:P314L,S:D614G 294 AV.1 46.8409 478.506 1.55351 1.53036 1.57702 5.56372e-08 14760 2021-04-26 N:M234I,N:P365S,N:P383L,N:S197L,ORF14:Q44STOP,ORF1a:A486V,ORF1a:F3071Y,ORF1a:H3580Q,ORF1a:K1657E,ORF1a:L4F,ORF1a:T3255I,ORF1b:P1000L,ORF3a:G196V,ORF3a:S74F,ORF8:L84S,S:D614G,S:L452R 295 B.1.351.3 34.7234 263.757 1.54939 1.51855 1.58086 0.00145348 6.99411e+06 2021-02-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:T1240I,ORF1b:P314L,ORF1b:Q813H,S:D614G 296 B.1.526 7.57449 13.7441 1.54638 1.41092 1.69484 42.241 1.79875e+07 2020-12-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1a:K2511N,ORF1b:P314L,S:D614G 297 XA 143.466 4471.99 1.54442 1.53699 1.55188 1.87583e-16 54.1737 2020-11-02 ORF1a:T265I,ORF1b:P314L,ORF3a:A99V,ORF3a:Q57H,S:D614G 298 B.1.617.1 15.0129 50.5195 1.53827 1.46976 1.60999 0.000425827 3.73816e+06 2020-09-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 299 B.1.625 33.4534 244.94 1.53296 1.50224 1.56431 65.2132 540705 2021-03-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1a:Y947H,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 300 B.1.351.2 56.6214 698.322 1.5267 1.50876 1.54485 43568.2 5.14143e+07 2021-01-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 301 A.2.5 27.8107 169.794 1.51985 1.48418 1.55638 27432.9 1.44345e+07 2020-07-02 ORF1a:L3338F 302 A.2.5.2 36.0241 283.755 1.5196 1.49201 1.5477 1438.97 1.49765e+06 2021-01-04 ORF3a:G251V 303 A.2.5.1 63.6786 882.726 1.5185 1.50287 1.53429 12069.3 1.587e+06 2021-01-24 304 B.1.525 13.7742 42.7392 1.51629 1.44578 1.59023 7376.21 1.65015e+07 2020-12-15 N:G204R,N:M210I,N:R203K,ORF14:G50N,ORF14:W57L,ORF1a:I300F,ORF1b:L1099F,ORF1b:P314L,ORF1b:R2257S,ORF3a:S171L,S:D614G 305 Q.4 24.4271 131.356 1.51436 1.47439 1.55541 2103.45 2.55125e+07 2020-11-12 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:E484K,S:T95I 306 B.1.620 16.2002 58.6 1.50277 1.44471 1.56316 13840 4.48587e+06 2020-05-09 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 307 B.1.351 11.813 31.7769 1.50026 1.42174 1.58311 5523.05 1.40986e+08 2020-08-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1283V,ORF1a:T1881I,ORF1b:P314L,S:D138H,S:D614G 308 B.1.627 52.0221 589.782 1.49646 1.47844 1.51469 0.000253941 112195 2021-02-03 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:P67S,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 309 C.39 66.3756 958.912 1.4815 1.46794 1.49518 5.57638e-05 270657 2021-02-25 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 310 N.10 111.896 2721.3 1.47486 1.46695 1.48281 2.99159e-08 44384.4 2021-01-04 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:P314L,ORF3a:I158V,ORF3a:Q57H,ORF3a:S177I,S:D614G 311 AU.3 95.2418 1972.12 1.46521 1.45618 1.47429 29870.8 1.95108e+06 2021-02-26 N:M234I,N:P365S,N:P383L,N:S197L,ORF14:Q44STOP,ORF1a:A967V,ORF1a:F3071Y,ORF1a:H3580Q,ORF1a:K1657E,ORF1a:L4F,ORF1a:T3255I,ORF1b:P1000L,ORF3a:G196V,ORF3a:S74F,ORF8:L84S,S:D614G,S:L452R 312 B.1.1 0.660986 0.467194 1.45161 0.61245 3.44057 57367 2.12901e+08 2020-02-26 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:L3711F,ORF1b:P314L,S:A222V,S:D215H,S:D614G,S:L18F 313 P.3 27.2479 163.055 1.44557 1.41605 1.47571 4.50039 1.70861e+06 2021-01-31 N:M234I,N:T205I,ORF14:L52F,ORF1a:A1679S,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P104L,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R,S:T859N 314 B.1.214.3 65.8579 944.044 1.43832 1.42631 1.45044 1.31569e-06 159156 2021-01-20 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:A3209V,ORF1a:I1259V,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P1727L,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:Q675H,S:R190S,S:T1027I,S:T20N,S:V1176F 315 B.1.617 42.7295 398.5 1.43262 1.41448 1.451 0.00160498 314366 2020-09-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 316 B.1.617.3 46.3132 467.828 1.42843 1.4119 1.44514 3.71553e-07 183181 2021-02-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 317 B.1.575.1 63.7484 884.659 1.42257 1.41077 1.43446 1.02819 356550 2020-12-20 N:G204R,N:R203K,N:S327L,ORF14:G50N,ORF1a:A2344V,ORF1b:K2063R,ORF1b:P314L,ORF3a:V13L,ORF8:T87I,S:D614G 318 B.1.575 40.155 352.137 1.42256 1.40388 1.44148 0.0990056 727119 2020-12-02 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 319 B.1.1.519 27.7283 168.798 1.39805 1.37323 1.42332 0.111522 2.15469e+07 2020-11-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P2612L,ORF1b:P314L,ORF1b:R2613N,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 320 B.1.466.2 4.47852 5.42503 1.38967 1.24706 1.5486 118.311 1.64229e+07 2020-12-08 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 321 B.1.1.528 26.2133 151.028 1.3864 1.36123 1.41204 2.68262e-07 253213 2021-03-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 322 B.1.214.4 91.3819 1815.68 1.37995 1.37285 1.38708 2.77354e-13 692.779 2021-02-01 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:A3209V,ORF1a:I1259V,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S216L,ORF3a:S253P,ORF8:E92K,ORF8:G8STOP,ORF9b:Q77E,S:C1235F,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:P681R,S:R190S,S:T1027I,S:T20N,S:T470N,S:V1176F 323 B.1.429.1 63.5121 878.127 1.3782 1.36807 1.38841 1.25706e-14 46397.4 2020-12-30 N:G204R,N:R203K,ORF10:S23F,ORF14:G50N,ORF1a:T814I,ORF1b:P314L,S:D614G,S:G769V 324 R.1 18.1226 72.9759 1.37469 1.33996 1.41032 0.000305506 7.83345e+06 2020-11-02 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:P3504S,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:S477N,S:T95I 325 P.6 67.5326 992.563 1.33875 1.33062 1.34694 4.60162 739162 2021-01-03 N:M234I,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R,S:T859N 326 C.17 1.44376 1.09483 1.33407 1.00781 1.76595 78.3379 2.84936e+06 2020-05-27 N:D401Y,N:M234I,ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF1b:T2081I,ORF3a:D155Y,ORF3a:Q57H,ORF8:S24L,S:D614G,S:T20I 327 C.40 34.0578 253.807 1.33118 1.31561 1.34693 2.07945e-05 379679 2021-04-06 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R 328 AU.1 41.2887 372.198 1.32243 1.31007 1.3349 665.111 434749 2021-02-05 N:S197L,ORF14:Q44STOP,ORF1a:F3071Y,ORF3a:G196V,ORF8:L84S 329 B.1.604 66.1934 953.665 1.31356 1.30614 1.32101 1.59482e-13 964.433 2021-01-29 E:T9I,M:A63T,M:D3G,M:Q19E,N:D343G,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:L106F,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 330 A.28 21.6274 103.304 1.31165 1.2893 1.33439 0.0358441 1.35763e+06 2021-01-01 ORF3a:G251V 331 B.1.427 24.2403 129.378 1.30602 1.2866 1.32574 1.38717e-05 3.46899e+06 2020-10-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 332 B.1.429 6.87414 11.5061 1.30355 1.23712 1.37355 0.000539017 9.4379e+06 2020-10-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:G769V 333 B.1.36.31 25.2927 140.717 1.29991 1.28184 1.31824 7.84514e-10 152813 2020-11-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 334 P.4 24.4277 131.362 1.29751 1.27903 1.31626 4.41299e-08 25704.8 2021-03-18 N:M234I,N:T205I,ORF14:L52F,ORF1a:A1679S,ORF1a:A3209V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P104L,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:F120L,ORF8:I121L,ORF8:L118V,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R,S:T859N 335 B.1.636 26.665 156.222 1.29723 1.28031 1.31437 8.88608e-10 29173.9 2021-02-25 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 336 B.1.36.9 31.5011 217.377 1.29549 1.28129 1.30986 4.62579e-15 721.639 2020-09-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 337 A.27 20.5363 93.2925 1.28978 1.26868 1.31123 16229.6 3.26412e+06 2020-12-22 ORF3a:G251V 338 B.1.1.348 16.0849 57.7884 1.28616 1.25979 1.31309 0.00181665 1.19354e+07 2020-11-18 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:N460Y,ORF1a:T1001I,ORF1b:P314L,ORF8:F120L,ORF8:I121L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 339 B.1.623 13.388 40.4492 1.28427 1.25297 1.31636 5.88474e-09 138556 2021-01-05 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 340 P.2 22.5326 112.003 1.28239 1.26389 1.30116 0.000299609 8.04877e+06 2020-08-21 M:I82T,N:M234I,N:P13L,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:I114T,ORF1a:K3162E,ORF1a:L3201P,ORF1a:T1395I,ORF1a:T265I,ORF1a:T3255I,ORF1a:V2027A,ORF1a:V3847I,ORF1b:P314L,ORF1b:Y23C,ORF3a:L15F,ORF3a:P104L,ORF3a:P42L,ORF3a:Q57H,ORF3a:S171L,ORF8:A51S,ORF8:T11I,ORF9b:P10S,S:A264V,S:D614G,S:D80G,S:F157S,S:G446R,S:L452R,S:P681R,S:T478R,S:T859N 341 B.1.618 70.6756 1086.91 1.27808 1.27229 1.28389 1.31556e-12 21940.9 2021-01-15 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 342 AA.6 92.1125 1844.79 1.27474 1.27037 1.27911 3.31952e-15 392.322 2020-12-03 ORF1a:I1525V 343 B.1.243.1 94.1469 1927.09 1.27423 1.26998 1.2785 1.02567e-11 8066.45 2021-02-01 M:T175M,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:Y189C,S:D614G 344 B.1.1.525 35.962 282.784 1.27283 1.26181 1.28395 0.00978638 2.24814e+06 2021-02-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 345 B.1.549 25.623 144.374 1.26244 1.24791 1.27715 4.91339e-11 2.28158e+06 2020-10-21 N:G204R,N:R203K,N:T166I,ORF14:G50N,ORF14:H13Y,ORF1b:L1351F,ORF1b:P314L,ORF1b:T2084I,S:D614G 346 B.1.177.88 101.785 2252.1 1.26109 1.25744 1.26474 9.50993e-15 189.72 2021-01-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1a:A3143V,ORF1b:P314L,S:D614G 347 R.2 36.5809 292.542 1.25783 1.24791 1.26783 1.8531e-13 29303.5 2021-01-08 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:L3201P,ORF1a:P3504S,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,ORF9b:T83I,S:A701V,S:D253G,S:D614G,S:S477N,S:T95I 348 B.1.1.374 23.5996 122.711 1.25501 1.23994 1.27027 0.018486 585289 2021-01-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 349 B.1.1.393 75.4881 1239.68 1.25309 1.24842 1.25779 3.96244e-16 2326.29 2021-01-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 350 N.9 48.695 516.987 1.25293 1.2457 1.26021 5.48188e-11 584791 2020-11-11 N:T366I,ORF1a:D935G,ORF1a:G3676S,ORF1a:T265I,ORF1a:T403I,ORF1b:P314L,ORF1b:Q1204H,ORF3a:Q57H,S:D614G 351 B.1.466.1 32.2694 228.027 1.24819 1.23762 1.25886 8.53829e-05 121442 2020-12-08 N:G204R,N:R195I,N:R203K,ORF14:E42STOP,ORF14:G50N,ORF1a:A1151T,ORF1a:A3615V,ORF1b:P314L,ORF3a:D155Y,ORF3a:Q38P,S:D614G 352 AA.7 52.0948 591.425 1.24576 1.2393 1.25225 1.08066e-24 117.683 2020-12-14 N:S194L,ORF14:Q41STOP 353 AA.8 69.5217 1051.77 1.24556 1.24073 1.25042 1.79054e-24 117.763 2020-12-10 N:S194L,ORF14:Q41STOP 354 AA.5 75.2704 1232.55 1.24542 1.24096 1.2499 5.78666e-25 117.844 2020-12-14 ORF1a:S318L 355 AA.4 66.9902 976.715 1.24538 1.24037 1.25041 0 117.868 2020-12-01 ORF1a:F617L 356 AA.2 106.387 2460.12 1.24534 1.24218 1.2485 0 117.867 2020-12-01 ORF3a:G251V 357 AA.3 95.4337 1980.07 1.24531 1.24179 1.24884 0 117.861 2020-11-14 N:D22G,ORF1b:D54Y,ORF3a:G251V,ORF9b:I19V 358 AA.1 31.7986 221.471 1.24507 1.23456 1.25567 1433.12 1.14369e+06 2020-10-08 ORF1a:N1324S,ORF3a:G251V,ORF3a:V88A 359 B.1.177.15 30.5551 204.616 1.24506 1.23413 1.2561 4.42517e-15 5664.46 2020-09-10 N:A211V,N:G204R,N:R203K,ORF14:G50N,ORF1a:P3395S,ORF1b:P314L,S:D614G,S:L54F 360 P.7 30.8085 207.997 1.24345 1.23272 1.25427 0.00394537 621060 2020-10-07 N:M234I,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:K3162E,ORF1a:L3201P,ORF1a:P3359S,ORF1a:T265I,ORF1a:V3847I,ORF1b:P314L,ORF3a:P42L,ORF3a:Q57H,ORF8:A51S,ORF8:T11I,S:D614G,S:D80G,S:F157S,S:L452R,S:T791I,S:T859N 361 B.1.474 19.5325 84.5366 1.23947 1.22303 1.25613 6.20296e-07 379725 2020-10-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:G442V,ORF1a:I3619V,ORF1b:P314L,ORF3a:K75N,S:D614G 362 B.1.1.420 9.27845 20.0656 1.23215 1.19951 1.26569 12701.5 8.64176e+06 2020-10-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:S2114F,ORF1a:T1001I,ORF1b:P314L,ORF1b:T1555I,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 363 B.1.160.21 44.9243 440.298 1.23075 1.224 1.23753 7.53267e-17 741.145 2020-12-02 M:I82T,N:A152S,N:G204R,N:N213I,N:P344S,N:R203K,ORF14:G50N,ORF14:M60L,ORF14:V49L,ORF1a:M3087I,ORF1a:Q1201H,ORF1a:R3164H,ORF1a:T395I,ORF1b:G1129V,ORF1b:P314L,S:D138Y,S:D614G,S:N450K,S:P681R 364 A.29 9.61459 21.4598 1.22764 1.19713 1.25892 0.00206216 225729 2021-02-01 ORF1a:H417R,ORF3a:G251V 365 B.1.214.1 73.8399 1186.23 1.22655 1.22257 1.23055 1.17565e-14 168948 2020-12-14 N:D402Y,N:G204R,N:P80R,N:R203K,N:S413I,ORF14:G50N,ORF14:V49L,ORF1a:A2001T,ORF1a:I2786T,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T78A,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 366 B.1.517.1 33.0295 238.814 1.22345 1.21477 1.2322 1.45022e-13 14023.1 2020-12-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:D3728N,ORF1b:P314L,S:D614G,S:T29I 367 B.1.400.1 63.4603 876.698 1.22265 1.21815 1.22717 1.33952e-15 6372.43 2020-12-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3143V,ORF1b:P314L,ORF1b:S997P,S:D614G 368 B.1.127 20.6499 94.3109 1.21855 1.20521 1.23204 5.04262e-15 139559 2020-11-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F343L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 369 AB.1 52.8412 608.439 1.21729 1.21211 1.22249 1.19438e-15 1282.94 2020-12-21 ORF1b:A88V 370 AF.1 43.666 416.078 1.21383 1.20774 1.21996 8.90913e-15 27025.7 2020-11-14 371 B.1.160.33 34.127 254.833 1.21291 1.20517 1.22069 1.63072e-27 137.088 2020-11-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3846S,ORF1b:P314L,ORF3a:A54S,S:D614G 372 B.1.160.7 28.5141 178.407 1.21282 1.20358 1.22214 1.30411e-17 377.348 2020-10-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3333T,ORF1b:P314L,S:D614G,S:T478I 373 B.1.36.23 13.1362 38.9907 1.21279 1.19282 1.2331 1.85149e-14 10711.1 2020-08-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:E913D,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T1542I,ORF1b:P314L,S:D614G,S:K1073N,S:S255F 374 B.1.635 26.0967 149.702 1.21206 1.20203 1.22218 4.8499e-09 72716.1 2021-01-28 E:T9I,M:A63T,M:Q19E,N:G204R,N:P13L,N:R203K,N:S413R,ORF14:G50N,ORF1a:G1307S,ORF1a:L3027F,ORF1a:L3201F,ORF1a:P3395H,ORF1a:S135R,ORF1a:T3090I,ORF1a:T3255I,ORF1a:T842I,ORF1b:I1566V,ORF1b:P314L,ORF1b:R1315C,ORF1b:T2163I,ORF3a:T223I,ORF6:D61L,ORF9b:P10S,S:D405N,S:D614G,S:D796Y,S:E484A,S:G339D,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R408S,S:S371F,S:S373P,S:S375F,S:S477N,S:T19I,S:T376A,S:T478K,S:V213G,S:Y505H 375 AU.2 12.4995 35.4255 1.2118 1.19099 1.23297 0.000713276 739060 2021-01-15 N:M234I,N:P365S,N:P383L,N:S197L,ORF14:Q44STOP,ORF1a:F3071Y,ORF1a:H3580Q,ORF1a:K1657E,ORF1a:L4F,ORF1a:T3255I,ORF1b:P1000L,ORF3a:G196V,ORF3a:S74F,ORF8:L84S,S:D614G,S:L452R 376 N.5 16.2361 58.8539 1.21083 1.1949 1.22696 4.50453e-05 9.98253e+06 2020-05-25 M:I82S,N:D3Y,N:T205I,ORF10:R24C,ORF14:L52F,ORF1a:A3548V,ORF1a:R550H,ORF1a:S3384L,ORF1a:T265I,ORF1a:T4249I,ORF1a:V3653F,ORF1b:P1165L,ORF1b:P314L,ORF3a:Q57H,ORF3a:S40L,ORF3a:T64I,ORF7a:T14I,S:D614G,S:E484K,S:F490S,S:G257S,S:L18F,S:N501T,S:T859N 377 B.1.258.17 4.64118 5.76142 1.2108 1.15602 1.26818 9.87488e-05 1.10202e+07 2020-09-24 N:A12G,N:G204R,N:R203K,ORF14:G50N,ORF1a:A903V,ORF1b:A2282V,ORF1b:P314L,ORF9b:H9D,S:D614G,S:S12F 378 B.1.596.1 31.9721 223.875 1.2105 1.20241 1.21864 2.05032e-11 380740 2020-10-23 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 379 B.1.1.332 63.2723 871.524 1.20914 1.20509 1.2132 6.813e-13 84683.4 2020-11-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 380 B.1.1.222 0.840592 0.601278 1.20797 0.940605 1.55132 1.18732e-07 5.51146e+06 2020-05-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1b:P314L,S:D614G,S:N501Y 381 B.1.177.62 16.8444 63.2394 1.20448 1.18994 1.2192 1.48508e-12 680878 2020-11-13 M:A2S,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 382 B.1.530 39.7276 344.719 1.20301 1.1969 1.20915 9.68892e-11 1.21012e+06 2020-10-20 M:A2V,N:D377Y,N:G204R,N:R203K,N:R40C,ORF14:F8S,ORF14:G50N,ORF1a:P4312T,ORF1a:Q1021R,ORF1a:S1102G,ORF1b:P314L,ORF3a:A110S,ORF8:E64STOP,S:D614G 383 C.19 35.5286 276.051 1.20178 1.19503 1.20858 8.69756e-18 1891.23 2020-12-07 ORF1a:A516V,ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 384 C.36.1 27.3106 163.799 1.20109 1.19236 1.20988 2.25007e-15 41859.6 2020-10-01 ORF1a:I4098L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 385 B.1.399 7.59926 13.8271 1.19967 1.169 1.23114 1.0752e-16 44523.3 2020-05-22 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1a:G519S,ORF1b:A1291S,ORF1b:P314L,ORF3a:W69C,S:D614G 386 Y.1 39.9809 349.105 1.19963 1.19374 1.20555 3.44065e-15 7405.67 2020-11-10 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 387 B.1.561 17.6615 69.3817 1.19936 1.18611 1.21276 1.33996e-11 485917 2020-08-02 N:A152S,N:G204R,N:P199L,N:R203K,ORF14:G50N,ORF14:Q46STOP,ORF1a:A1352V,ORF1a:A2129V,ORF1a:G3676S,ORF1a:L293F,ORF1a:P1640L,ORF1b:P314L,S:D614G,S:N439K,S:P9L,S:T859N 388 B.1.177.52 20.6894 94.6662 1.19903 1.18774 1.21042 3.05543e-06 191496 2020-09-28 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:L2039F,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G,S:Q675H 389 B.1.177.37 45.4182 449.991 1.19823 1.19311 1.20337 1.29785e-12 107058 2020-12-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF7a:P84S,S:D614G,S:E1258V 390 B.1.131 20.3112 91.2906 1.1979 1.18652 1.20939 2.01893e-13 140191 2020-10-15 N:A336V,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF14:V49L,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF1b:S1023G,ORF8:S24L,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:S98F,S:T716I 391 B.1.603 35.2055 271.085 1.19717 1.19063 1.20374 2.51743e-14 23373.3 2020-12-14 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 392 B.1.160.12 26.1794 150.642 1.19691 1.18815 1.20574 7.75138e-14 771020 2020-11-10 N:A182S,N:G204R,N:R203K,ORF14:G50N,ORF14:K28N,ORF1b:P314L,S:D614G 393 C.36.2 36.1287 285.396 1.19684 1.19049 1.20322 1.1461e-15 8405.47 2020-10-31 ORF1a:T265I,ORF1a:T551I,ORF1b:P314L,ORF3a:Q57H,S:D614G 394 B.1.1.433 32.0396 224.815 1.19681 1.18966 1.20401 3.25079e-15 24899 2020-11-30 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69Y,S:N17S,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 395 B.1.177.82 12.3095 34.3952 1.19592 1.17754 1.21458 3.0847e-08 5.40107e+06 2020-08-30 N:G204R,N:P199S,N:R203K,N:V72I,ORF14:G50N,ORF1b:P314L,S:D614G 396 B.1 0.60903 0.429204 1.19563 0.874958 1.63383 45570.2 2.28537e+08 2020-01-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:L3711F,ORF1b:P314L,S:A222V,S:D614G,S:L18F,S:S256L 397 B.1.1.345 63.9666 890.713 1.19509 1.19155 1.19863 7.65852e-17 356.584 2021-01-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 398 A.23.1 12.5532 35.7192 1.1946 1.17679 1.21267 1.92756e-06 5.41628e+06 2020-11-10 N:S190I,ORF14:V37F,ORF3a:G251V 399 B.1.160.26 22.9145 115.778 1.19424 1.18449 1.20407 1.71742e-12 576414 2020-10-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:G1069R,ORF1a:S2517F,ORF1b:P1427S,ORF1b:P1821S,ORF1b:P314L,S:D138Y,S:D614G 400 B.1.177.72 36.9395 298.271 1.19148 1.18558 1.19741 3.93082e-05 995087 2020-11-10 N:G204R,N:R203K,ORF14:G50N,ORF14:T39I,ORF1a:A2891V,ORF1a:G989C,ORF1a:M2254I,ORF1a:V3718F,ORF1b:A1798S,ORF1b:N1188S,ORF1b:P314L,ORF3a:A110S,ORF9b:G38D,S:D614G 401 C.36 15.8562 56.1959 1.19063 1.17705 1.20437 2.07885e-11 571225 2020-12-25 ORF1a:A2344S,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 402 AP.1 33.6229 247.411 1.19017 1.18377 1.1966 1.09395e-25 153.788 2020-10-08 ORF1a:L1375F,ORF1b:V2223L,ORF8:L84S,S:A829T 403 B.1.177.66 28.614 179.648 1.1888 1.18139 1.19626 1.61554e-12 54969 2020-11-02 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:T223I,S:D614G 404 B.1.466 43.2248 407.749 1.18873 1.18383 1.19366 2.0561e-11 21168.2 2020-12-08 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:Q38P,S:D614G 405 B.1.1.486 19.3045 82.6089 1.18833 1.17741 1.19935 2.55355e-14 80402.1 2020-11-03 M:A2S,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 406 B.1.177.27 19.7926 86.7638 1.18707 1.17656 1.19768 1.76587e-20 1174.61 2020-10-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:S391F,ORF1b:P314L,S:D614G 407 B.1.177.78 44.0834 424.035 1.18704 1.18231 1.19179 4.51756e-15 82629.5 2021-01-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:R2267G,ORF1b:P314L,S:D614G 408 B.1.258.14 24.8908 136.33 1.18671 1.17837 1.19511 2.73552e-13 64132.7 2020-10-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 409 B.1.160.9 31.5895 218.589 1.1855 1.179 1.19202 7.04484e-13 175252 2020-12-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:A846V,S:D614G 410 C.2.1 21.986 106.708 1.18545 1.17614 1.19484 9.42243e-13 442086 2021-01-19 N:P207S,ORF1a:F406Y,ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF1b:T1076I,ORF3a:Q57H,ORF8:S24L,S:D614G 411 B.1.404 30.4492 203.212 1.18507 1.17837 1.19182 6.44842e-15 20832.8 2020-09-30 M:H125Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:M3862I,ORF1a:T1597I,ORF1b:A440V,ORF1b:P314L,S:D1084Y,S:D614G 412 B.1.160.19 48.9294 521.958 1.18495 1.18078 1.18914 2.06498e-15 14472.6 2020-12-28 N:G204R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1b:P314L,S:D614G,S:T732A 413 B.1.1.522 20.7457 95.174 1.18489 1.17508 1.19478 4.80858e-12 778940 2021-02-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:N1662S,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 414 M.1 32.5999 232.686 1.18476 1.17851 1.19103 3.5936e-15 23027.6 2020-12-24 N:D377Y,N:M234I,N:T205I,ORF14:L52F,ORF1a:A903V,ORF1a:E2664D,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,ORF8:V100L,ORF8:V32L,S:D614G,S:L452R,S:S13I,S:W152C 415 B.1.177.86 10.427 25.0301 1.18425 1.16494 1.20388 1.50736e-06 4.75927e+06 2020-10-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1b:P314L,ORF7a:L116F,S:D614G 416 U.3 26.911 159.088 1.18401 1.1765 1.19155 1.00442e-05 155968 2021-01-23 N:P13L,N:S202R,ORF14:V49G,ORF1a:F3677L,ORF1a:G1946S,ORF1a:K798N,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF7a:L116F,ORF8:T11I,ORF9b:P10S,S:D1260N,S:D253G,S:D614G,S:Q957R,S:S477N,S:T95I 417 B.1.177.60 10.1853 23.9382 1.18362 1.16398 1.20359 0.0990635 2.30924e+07 2020-09-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:K3353R,ORF1b:P314L,S:D614G 418 U.1 28.4184 177.222 1.18347 1.17641 1.19058 1.0131e-21 159.539 2021-01-02 N:P13L,N:S202R,ORF14:V49G,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF7a:L116F,ORF8:T11I,ORF9b:P10S,S:D253G,S:D614G,S:Q957R,S:S477N,S:T95I 419 U.2 41.3411 373.139 1.18324 1.17839 1.18811 5.12708e-06 334147 2020-12-07 N:P13L,N:S202R,ORF14:V49G,ORF1a:G1946S,ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF7a:L116F,ORF8:T11I,ORF9b:P10S,S:D253G,S:D614G,S:Q957R,S:S477N,S:T95I 420 B.1.177.61 47.8611 499.495 1.18313 1.17895 1.18733 8.19581e-15 15619.5 2020-12-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 421 B.1.2 4.27358 5.01691 1.18153 1.13627 1.2286 38.2977 3.37663e+07 2020-06-13 N:G204R,N:G215C,N:R203K,ORF14:G50N,ORF1b:D1028A,ORF1b:P314L,S:D614G,S:E484K,S:H655Y 422 B.1.258.23 37.2066 302.573 1.18135 1.17607 1.18665 1.56626e-17 3565.53 2020-12-14 N:G204R,N:H145Y,N:R203K,ORF14:G50N,ORF1a:P3359S,ORF1a:W2769C,ORF1b:P314L,S:D614G,S:T1117I 423 B.1.1.413 18.2883 74.2901 1.18011 1.16954 1.19078 4.32588e-06 360305 2020-10-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 424 B.1.1.397 16.5427 61.0443 1.17869 1.16719 1.1903 0.0416093 4.64508e+06 2020-10-05 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 425 B.1.177.67 27.7451 169.001 1.17864 1.17178 1.18555 1.22888e-12 312027 2020-12-20 N:G204R,N:R203K,N:T362I,ORF14:A38V,ORF14:G50N,ORF1a:P2685T,ORF1b:A1884S,ORF1b:M2408I,ORF1b:P314L,S:D614G,S:D867G,S:V62I 426 B.1.177.58 25.3121 140.93 1.17847 1.17096 1.18603 6.80666e-13 1.01797e+06 2020-10-06 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:L85F,S:D614G 427 B.1.177.5 61.5653 825.24 1.17836 1.17527 1.18146 9.20214e-17 15455.3 2020-09-07 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 428 B.1.177.68 35.7339 279.23 1.17834 1.17302 1.18368 2.72323e-12 325669 2021-01-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:V1295F,ORF1b:P314L,S:D614G 429 B.1.177.11 18.5848 76.6714 1.17831 1.16811 1.1886 9.50102e-16 11003.3 2020-09-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:A516V,ORF1a:K3353R,ORF1a:N2603D,ORF1b:D2576G,ORF1b:P314L,S:A879S,S:D614G,S:T732A 430 B.1.177.47 47.453 491.045 1.1783 1.17429 1.18232 7.6804e-24 164.044 2020-12-12 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 431 B.1.177.59 35.3293 272.982 1.17827 1.1729 1.18367 3.78192e-13 623688 2020-09-26 N:A119S,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 432 B.1.36.29 10.8105 26.8141 1.17826 1.16079 1.19599 3.1017e-09 1.33891e+06 2020-07-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:A1078S,S:D614G 433 B.1.177.65 68.8769 1032.39 1.1782 1.17545 1.18097 1.5991e-16 2093.19 2020-10-02 N:D22G,N:G204R,N:R203K,ORF14:G50N,ORF1a:S944L,ORF1b:E1264D,ORF1b:P314L,ORF9b:I19V,S:A520S,S:D614G 434 B.1.177.63 56.2801 689.952 1.1782 1.17483 1.18159 6.79848e-26 164.142 2020-11-07 M:V70I,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 435 B.1.177.48 46.612 473.859 1.17819 1.17412 1.18228 8.76213e-19 214.005 2020-10-07 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 436 B.1.177.80 25.9269 147.78 1.17818 1.17087 1.18554 4.93703e-13 790034 2020-12-27 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 437 B.1.177.64 63.1037 866.895 1.17818 1.17517 1.18119 6.18854e-16 26668 2021-01-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:Q57H,S:D614G 438 B.1.177.8 29.7339 193.854 1.17811 1.17174 1.18452 1.48333e-12 29413.5 2020-09-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2344V,ORF1a:P1158S,ORF1a:S3884L,ORF1b:P314L,ORF8:F120L,ORF8:I121L,S:D614G 439 B.1.177.7 24.7287 134.581 1.17801 1.17036 1.18571 7.57301e-15 269070 2020-08-20 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3541R,ORF1b:C1732S,ORF1b:P314L,ORF1b:Q1546H,ORF1b:T1522I,ORF1b:V1271L,ORF3a:D173G,S:A688V,S:D614G 440 B.1.177.6 36.4035 289.727 1.178 1.1728 1.18323 6.718e-15 15039.1 2020-10-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1352T,ORF1a:S2797F,ORF1a:T4207I,ORF1b:L1203I,ORF1b:P314L,ORF1b:S1003G,ORF1b:Y2018H,S:D614G 441 B.1.177.18 28.5367 178.687 1.17789 1.17126 1.18454 1.62892e-14 85714.1 2020-09-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1049V,ORF1a:D4085G,ORF1b:P314L,S:D614G,S:Q677H,S:T732S 442 B.1.177.84 36.4565 290.566 1.17715 1.17201 1.18232 1.95945e-20 179.654 2020-09-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1b:P314L,S:D614G 443 B.1.438.1 4.76329 6.02121 1.17688 1.1382 1.21688 7.00258e-08 311714 2020-11-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:V121L,S:D614G 444 B.1.375 13.4163 40.615 1.17681 1.16294 1.19085 7.58538e-14 410830 2020-10-26 N:G204R,N:G214C,N:P13L,N:R203K,ORF14:G50N,ORF14:M60I,ORF1a:F2387V,ORF1a:F3677L,ORF1a:G3278S,ORF1a:L3201P,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:D614G,S:F490S,S:G75V,S:L452Q,S:T76I,S:T859N 445 B.1.177.30 54.4664 646.321 1.17552 1.17213 1.17891 5.92098e-20 198.241 2020-11-01 N:D377Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:S3244L,ORF1b:P314L,ORF7b:A15S,S:D614G 446 B.1.177.9 25.8105 146.472 1.17517 1.16808 1.18231 9.83515e-21 244.508 2020-09-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1a:P361L,ORF1a:R560C,ORF1b:G170C,ORF1b:P314L,S:D614G 447 B.1.1.101 23.9772 126.619 1.17513 1.1675 1.18282 2.08329e-16 36218.6 2020-06-23 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:P2260L,ORF1b:P314L,ORF3a:T64I,S:A222V,S:D614G,S:L18F 448 B.1.596 12.2186 33.9076 1.17316 1.15856 1.18794 7.2671e-13 276408 2020-08-12 E:T9I,M:A63T,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:P314L,ORF3a:S26L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:H655Y,S:K417N,S:L981F,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q498R,S:Q954H,S:S371F,S:S373P,S:S375F,S:T478K,S:T547K,S:T95I,S:Y505H 449 B.1.36.21 23.9383 126.213 1.17133 1.16402 1.17869 1.0844e-13 449930 2020-10-28 N:D3Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:L2213F,ORF1b:P314L,ORF1b:P970L,ORF1b:R2652S,S:D614G,S:K1073N 450 B.1.1.338 24.7392 134.693 1.1713 1.16423 1.17842 1.58071e-16 269496 2020-12-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:W152R 451 B.1.1.336 29.4205 189.823 1.17123 1.16528 1.1772 2.59502e-10 1.58089e+06 2020-11-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 452 AM.3 38.1613 318.209 1.17074 1.16618 1.17531 9.37277e-27 171.093 2020-11-12 N:A220V,ORF14:L67F,ORF1a:L1507F,ORF1a:V378I,ORF3a:T223A,ORF3a:V112F,ORF9b:I5T,S:D614G 453 W.1 23.5395 122.094 1.16938 1.16211 1.17668 617.518 477216 2020-10-21 N:P207L,ORF1a:T265I,ORF1b:P314L,ORF3a:L15F,ORF3a:Q57H,S:D614G,S:M153I,S:Q675H 454 B.1.36.39 28.2691 175.383 1.1687 1.1627 1.17473 1.96567e-14 7981.8 2020-10-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:E910D,ORF1a:G3278S,ORF1a:L2062F,ORF1a:T1246I,ORF1a:Y1536H,ORF1b:P1967S,ORF1b:P314L,ORF7b:L18P,S:D614G 455 B.1.1.261 5.513 7.75354 1.16761 1.13757 1.19844 4.31727e-08 424649 2020-04-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1871G,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 456 B.1.1.186 10.3614 24.7309 1.16753 1.15147 1.18382 1.44492e-14 51168 2020-07-29 M:I82T,N:M234I,N:Q28R,N:R10P,N:T205I,ORF14:L52F,ORF1a:S2396I,ORF1a:S428G,ORF1a:T1638I,ORF1a:T3255I,ORF1a:V3718F,ORF1a:Y3722C,ORF1b:P314L,ORF9b:E7Q,ORF9b:R25G,S:D253N,S:D614G,S:D796H,S:E484A,S:L452R,S:P681R,S:S939F,S:T478K,S:T572N,S:T76I,S:T859N 457 B.1.1.341 20.3101 91.2815 1.16675 1.15861 1.17495 4.30377e-30 175.008 2020-09-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E995D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF1b:Y1678H,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 458 B.1.1.207 12.5596 35.7544 1.16643 1.15335 1.17967 1.10323e-13 123988 2020-08-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:G59S,ORF1b:P314L,ORF1b:Q2247H,S:A879S,S:D614G,S:Q675R 459 AW.1 49.6752 537.934 1.16558 1.16229 1.16888 3.23794e-19 3204.2 2020-10-28 N:M234I,N:P365S,N:P383L,N:S197L,ORF14:Q44STOP,ORF1a:F3071Y,ORF1a:H3580Q,ORF1a:K1657E,ORF1a:L4F,ORF1a:T3255I,ORF1b:P1000L,ORF3a:G196V,ORF3a:S74F,ORF8:L84S,S:D614G,S:L452R,S:S477N 460 W.4 23.3747 120.412 1.16542 1.15846 1.17242 5.14706e-15 5655.65 2020-09-10 ORF1a:A1352V,ORF1a:T265I,ORF1b:P314L,ORF3a:A99V,ORF3a:Q57H,S:D614G 461 W.2 30.094 198.537 1.16518 1.15978 1.17059 3.147e-13 97816.4 2020-10-10 N:P207L,N:Q9H,N:T135I,N:T391I,ORF1a:T265I,ORF1a:T4087I,ORF1b:P314L,ORF1b:V1905L,ORF3a:Q57H,ORF9b:S6I,S:D614G 462 B.1.177.89 31.6121 218.9 1.16503 1.15991 1.17018 6.32438e-16 23222.9 2020-12-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1a:P927L,ORF1b:P314L,S:D614G 463 W.3 23.5503 122.205 1.16494 1.15808 1.17185 4.52996e-22 248.958 2020-09-10 ORF1a:T265I,ORF1b:E1288D,ORF1b:P314L,ORF3a:Q57H,ORF3a:T24I,S:D614G 464 B.1.177.53 9.74692 22.0219 1.16493 1.14841 1.18169 1.7213e-06 2.87527e+06 2020-08-13 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 465 B.1.1.317 1.98141 1.61347 1.16422 1.0859 1.2482 6787.62 1.69257e+07 2020-05-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 466 A.23 17.319 66.7721 1.16384 1.15464 1.1731 1.47789e-12 787470 2020-08-15 ORF3a:G251V 467 B.1.1.272 8.36947 16.5385 1.16307 1.14432 1.18214 2.88516e-18 4078.09 2020-08-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 468 B.1.36.27 36.9115 297.821 1.16256 1.15831 1.16683 4.08373e-13 165702 2020-09-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF1b:S1187I,ORF8:R52K,S:D614G,S:S477N 469 B.1.398 9.3101 20.1948 1.16103 1.14461 1.17769 1.75105e-13 547801 2020-01-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1b:P314L,S:D614G 470 B.1.258.5 19.5231 84.4564 1.16075 1.15292 1.16863 6.42139e-21 211.821 2020-09-25 N:D3Y,N:G204R,N:K127R,N:R203K,ORF14:G50N,ORF1a:H83R,ORF1a:Q526K,ORF1b:I235T,ORF1b:K2557R,ORF1b:P314L,ORF1b:Y1072F,ORF3a:T223I,ORF3a:Y154H,S:D614G 471 B.1.258.10 25.7905 146.247 1.16064 1.15472 1.16659 8.39306e-19 1313.04 2020-09-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1554A,ORF1b:P314L,S:D614G,S:R21I 472 B.1.438.3 37.9886 315.351 1.16051 1.1565 1.16455 7.95445e-16 251.83 2021-02-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:T999I,ORF1b:P314L,S:D614G 473 B.1.258.9 8.64208 17.5591 1.16039 1.14286 1.17819 7.28853e-18 8616.55 2020-09-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:G963S,ORF1b:P314L,S:D198G,S:D614G 474 B.1.258.4 23.9305 126.132 1.16013 1.15379 1.16651 7.75287e-17 18698.8 2020-09-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:H374Y,ORF1b:I235T,ORF1b:P314L,ORF3a:T223I,S:D1260Y,S:D614G 475 B.1.438.2 40.0088 349.59 1.16009 1.1563 1.16389 4.836e-14 120098 2021-01-08 N:G204R,N:R203K,ORF14:G50N,ORF1a:S2900L,ORF1b:P314L,S:D614G,S:G1251V 476 B.1.160.31 26.6524 156.076 1.15983 1.15417 1.16553 9.43109e-15 80342.4 2020-11-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 477 B.1.1.445 33.251 242.006 1.15976 1.15522 1.16432 2.62247e-16 5300.33 2020-12-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T214A,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 478 B.1.346 9.20884 19.783 1.1595 1.14325 1.17599 4.41842e-12 399717 2020-07-27 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 479 B.1.177.21 2.56009 2.27904 1.15907 1.10198 1.21911 4.59541e-13 1.77586e+06 2020-08-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:T1168N,ORF1a:T4364I,ORF1a:T814I,ORF1b:A2585S,ORF1b:E1288D,ORF1b:P314L,ORF1b:T2163I,ORF3a:G172C,S:D614G 480 B.1.177.12 21.5343 102.43 1.15881 1.15189 1.16576 9.77123e-14 323599 2020-09-21 N:G204R,N:R203K,ORF14:G50N,ORF1b:D2142Y,ORF1b:P314L,ORF8:D34G,ORF8:E64STOP,S:D614G,S:T732A 481 B.1.160 2.87398 2.69233 1.15776 1.10768 1.2101 13712.3 9.21268e+07 2020-01-01 N:A211V,N:G204R,N:G30R,N:R203K,ORF14:G50N,ORF1a:E352D,ORF1a:S3001N,ORF1a:T2648I,ORF1b:A434S,ORF1b:P314L,ORF3a:Q185H,ORF9b:M26I,S:D614G,S:R357K,S:T20I 482 B.1.177 3.75662 4.06489 1.15764 1.11919 1.19741 9611.6 6.79341e+07 2020-06-20 N:D288N,N:G204R,N:R203K,ORF14:G50N,ORF1a:I3618V,ORF1a:P959S,ORF1a:R1163K,ORF1a:T3255I,ORF1a:T4175I,ORF1b:P314L,ORF1b:R1518K,S:D614G,S:P681H,S:T478K,S:T732A 483 B.1.1.375 34.9718 267.521 1.15745 1.15327 1.16165 9.2101e-15 63829.9 2020-11-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 484 C.1.1 46.0853 463.251 1.15729 1.15412 1.16047 2.12439e-17 1022.64 2020-11-25 ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 485 B.1.221.4 15.7608 55.5384 1.15537 1.14639 1.16443 2.28822e-12 4.79871e+06 2020-11-18 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T2121I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 486 Z.1 27.4243 165.153 1.15502 1.14988 1.16019 1.13599e-11 66250.5 2020-10-09 N:T148S,ORF1a:E1311G,ORF1a:S674N,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 487 B.1.160.29 13.9384 43.7328 1.15448 1.14446 1.16459 3.74108e-13 255544 2020-11-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2344T,ORF1a:L3116F,ORF1b:A2431S,ORF1b:P314L,ORF3a:G224C,S:D614G 488 B.1.160.25 13.1658 39.1608 1.15438 1.14379 1.16507 1.3247e-09 542413 2021-01-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF8:D34N,ORF8:E106STOP,S:D614G 489 B.1.160.24 25.3857 141.742 1.15437 1.14886 1.1599 3.19695e-16 14929.5 2020-12-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 490 B.1.160.11 18.3644 74.8975 1.15426 1.14667 1.1619 2.35328e-14 56234.3 2020-11-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 491 B.1.160.13 33.8512 250.759 1.15413 1.15001 1.15826 7.86898e-16 47315 2020-12-11 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 492 B.1.160.28 11.2799 29.0836 1.15409 1.14179 1.16652 1.04972e-11 422068 2020-09-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3143V,ORF1b:P314L,S:D614G 493 B.1.160.8 15.0609 50.8347 1.15405 1.14483 1.16334 1.73178e-16 28197.7 2020-10-12 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:A846V,S:D614G 494 B.1.160.27 33.1564 240.64 1.15404 1.14984 1.15825 1.68521e-14 96674.1 2021-01-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 495 B.1.160.15 16.6751 62.0024 1.15399 1.14567 1.16237 5.43402e-15 157501 2020-10-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1268V,ORF1b:P255S,ORF1b:P314L,S:D614G,S:I233V 496 B.1.160.30 11.358 29.4707 1.15394 1.14175 1.16626 6.58331e-07 4.32638e+06 2020-06-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T1540I,S:D614G 497 B.1.160.17 18.1083 72.8631 1.15386 1.14621 1.16156 2.86833e-17 19671.2 2020-11-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF8:V114F,S:D614G 498 B.1.221 7.93701 14.9848 1.15385 1.13647 1.1715 0.000273619 5.76193e+07 2020-04-11 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:N2147D,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF1b:V2178F,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H49Y,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 499 B.1.160.20 20.16 89.9593 1.15378 1.14691 1.16068 1.35412e-15 118000 2020-11-01 N:G204R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:A1283V,ORF1b:P314L,ORF1b:V2475I,ORF3a:F105V,ORF8:V32L,S:D614G 500 B.1.160.18 24.5083 132.22 1.15377 1.14812 1.15945 2.27649e-11 1.81184e+06 2021-01-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T1717A,S:D614G 501 B.1.1.214 3.65381 3.88872 1.15361 1.11632 1.19215 1847.11 3.1592e+07 2020-06-20 N:G204R,N:R203K,ORF14:G50N,ORF1a:Q3777H,ORF1b:P314L,S:D614G 502 B.1.221.3 11.3316 29.3398 1.1535 1.14136 1.16576 1.59635e-15 50936.8 2020-09-14 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T3284I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:P681H,S:R190S,S:T1027I,S:T20N,S:V1176F 503 B.1.221.2 23.8165 124.948 1.15342 1.14764 1.15924 1.1914e-15 136440 2020-10-13 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:P681H,S:R190S,S:T1027I,S:T20N,S:V1176F 504 B.1.177.46 24.541 132.569 1.15333 1.14773 1.15897 3.20704e-11 312291 2021-01-02 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 505 B.1.160.32 18.0413 72.3357 1.15332 1.1457 1.16099 1.0782e-15 175855 2020-10-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:E2619Q,ORF1a:G993S,ORF1b:P314L,ORF8:E64STOP,S:D614G 506 B.1.160.10 16.8093 62.9819 1.15331 1.14514 1.16154 3.45509e-07 345710 2020-11-08 N:G204R,N:R203K,ORF14:G50N,ORF1a:L27I,ORF1a:T2777I,ORF1a:V3653F,ORF1b:P314L,ORF3a:L219V,S:D614G,S:L452Q 507 B.1.221.1 11.9465 32.4703 1.15311 1.14166 1.16468 1.06399e-15 7545.08 2020-08-26 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:P681H,S:R190S,S:T1027I,S:T20N,S:V1176F 508 C.23 16.3284 59.5088 1.1527 1.14437 1.1611 6.76333e-15 59646 2020-10-13 ORF1a:F190L,ORF1a:T2532I,ORF1a:T265I,ORF1b:F1214Y,ORF1b:P314L,ORF3a:G49S,ORF3a:Q57H,ORF8:S24L,S:A344S,S:D614G 509 B.1.563 24.6688 133.937 1.15261 1.1471 1.15816 1.10168e-16 7176.53 2020-12-10 N:G204R,N:G212C,N:R203K,ORF14:G50N,ORF1a:A2636V,ORF1a:A405D,ORF1b:P314L,ORF6:I26M,S:D614G 510 B.1.177.76 15.6586 54.8384 1.15232 1.14368 1.16103 8.23786e-16 13189.2 2020-12-14 M:H125Y,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 511 B.1.258 3.64068 3.86652 1.15212 1.11553 1.18992 0.000246876 4.41559e+07 2020-07-15 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:R21I 512 B.1.280 6.18774 9.51547 1.14915 1.12845 1.17022 8.34042e-14 115319 2020-06-29 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:K1073N 513 B.1.361 12.3912 34.8364 1.14821 1.13798 1.15853 1.64125e-15 81011.8 2020-09-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 514 B.1.177.73 6.9577 11.7621 1.14809 1.12998 1.1665 4.72889e-10 4.99924e+06 2020-10-12 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 515 B.1.177.81 5.46905 7.64546 1.1478 1.12491 1.17115 1.18835e-06 1.54823e+07 2020-08-24 N:G204R,N:P199S,N:R203K,N:V72I,ORF14:G50N,ORF1b:P314L,S:D614G 516 B.1.243 3.46019 3.56868 1.14726 1.11161 1.18405 4.21595e-08 7.41533e+06 2020-04-08 M:T175M,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 517 B.1.177.51 12.8488 37.3595 1.14717 1.13747 1.15695 1.96866e-14 568308 2020-10-11 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G,S:Q675H 518 B.1.524 7.59971 13.8286 1.14708 1.13075 1.16363 2.43531e-06 8.51855e+06 2020-09-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1a:T1055I,ORF1b:P314L,ORF1b:R2257S,ORF3a:S171L,S:D614G 519 B.1.177.32 9.20007 19.7475 1.14699 1.13351 1.16063 653.284 1.26317e+06 2020-09-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3901V,ORF1a:V3281A,ORF1b:P314L,ORF7b:N38I,S:D614G 520 B.1.177.39 17.2514 66.263 1.14679 1.1396 1.15402 1.14901e-14 119031 2020-10-14 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T2099I,S:D614G 521 B.1.177.10 10.7191 26.3832 1.14674 1.13521 1.15839 2.52886e-12 54145.5 2020-09-08 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3618V,ORF1a:P959S,ORF1a:T3255I,ORF1a:T4175I,ORF1b:P314L,ORF8:L4P,S:D614G,S:P681H,S:T478K,S:T732A 522 B.1.177.75 8.62828 17.5067 1.1467 1.1324 1.16118 3.62776e-13 2.31177e+06 2020-09-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:M657I,ORF1b:P314L,S:D614G 523 B.1.177.77 6.83878 11.3986 1.1467 1.12869 1.16499 3.47647e-08 2.39676e+07 2020-09-16 N:G204R,N:R203K,N:S2Y,N:T366I,ORF14:G50N,ORF1a:L1175F,ORF1a:V3718F,ORF1b:P314L,ORF3a:G174D,S:D614G,S:G1167A 524 B.1.177.45 29.0922 185.648 1.14667 1.14242 1.15095 5.33912e-19 8036.34 2020-09-14 N:G204R,N:R203K,ORF14:G50N,ORF1a:E3909G,ORF1a:T1581M,ORF1a:V1143F,ORF1b:A373T,ORF1b:P314L,ORF1b:T794I,ORF3a:L275F,ORF3a:T223I,ORF8:F3L,S:D614G,S:N679K,S:S477R,S:S673T 525 B.1.177.35 10.3742 24.7892 1.14652 1.13465 1.15852 1.51943e-13 599981 2020-10-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:L1434I,ORF1b:P314L,ORF1b:R2257S,ORF3a:A99S,ORF9b:R32L,S:D178N,S:D614G,S:V1104L 526 B.1.177.28 16.819 63.0524 1.14652 1.13918 1.1539 1.05393e-13 132670 2020-11-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:K3353R,ORF1b:P314L,S:D614G 527 B.1.177.38 22.1585 108.364 1.14639 1.14083 1.15197 104.81 199386 2020-10-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 528 B.1.177.85 16.5311 60.96 1.14638 1.13894 1.15388 3.25435e-15 39754.1 2020-11-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1b:P314L,S:D614G 529 B.1.177.29 33.6336 247.568 1.14638 1.14271 1.15006 2.06623e-16 9084.2 2020-12-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:K3353R,ORF1b:P314L,S:D614G 530 B.1.177.56 12.3614 34.6752 1.14638 1.13643 1.15641 1.94527e-12 401512 2020-08-21 N:A90T,N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,ORF3a:L94P,S:D614G 531 B.1.177.42 24.1221 128.135 1.14637 1.14126 1.1515 8.64874e-16 68671 2020-11-02 N:G204R,N:P151L,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1a:S1361P,ORF1a:V2604A,ORF1b:A414V,ORF1b:P314L,S:D614G 532 B.1.177.41 14.9031 49.8033 1.14637 1.13811 1.15468 9.2449e-13 232365 2020-11-30 N:G204R,N:P151L,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1a:S1361P,ORF1b:A414V,ORF1b:P314L,S:D614G,S:M153T 533 V.1 28.3354 176.199 1.14637 1.14202 1.15073 1.78743e-14 137002 2020-10-14 N:P13L,N:S202R,ORF14:V49G,ORF1a:F3770V,ORF1a:G1946S,ORF1a:K1281Q,ORF1a:L3201P,ORF1a:T265I,ORF1a:V3057A,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF7a:L116F,ORF8:T11I,ORF9b:P10S,S:D253G,S:D614G,S:L18F,S:Q957R,S:S477N,S:T95I 534 B.1.177.57 14.9246 49.9434 1.14635 1.13811 1.15466 0.00267913 1.38202e+06 2020-08-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:H1113Y,ORF1b:P314L,S:D614G 535 B.1.177.83 10.7961 26.7456 1.14634 1.13496 1.15783 9.56931e-13 1.21667e+06 2020-09-13 N:G204R,N:P199S,N:R203K,N:V72I,ORF14:G50N,ORF1b:M1765V,ORF1b:P314L,S:D614G,S:R346S 536 B.1.177.34 32.4721 230.879 1.14632 1.14253 1.15013 1.83679e-16 9227.12 2020-12-08 E:F26L,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:T747I 537 B.1.177.40 15.6273 54.6248 1.14632 1.13845 1.15424 3.93823e-12 574079 2020-10-26 N:G204R,N:P151L,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1a:S1361P,ORF1b:A414V,ORF1b:P314L,S:D614G 538 B.1.177.43 14.0234 44.2512 1.14631 1.13755 1.15514 9.45357e-13 659777 2020-09-29 M:M109I,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 539 V.2 31.5519 218.073 1.1463 1.14239 1.15021 7.51708e-18 1213.34 2020-11-05 N:M234I,N:P199L,ORF14:Q46STOP,ORF1a:F3677L,ORF1a:G1946S,ORF1a:L3201P,ORF1a:T265I,ORF1b:P2531S,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:A701V,S:D253G,S:D614G,S:T95I 540 B.1.177.20 20.6932 94.6998 1.14628 1.14034 1.15225 8.33673e-14 372491 2020-09-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 541 B.1.177.36 23.2117 118.76 1.14627 1.14097 1.1516 9.62643e-16 27151.1 2020-10-28 N:G204R,N:R203K,ORF14:G50N,ORF1a:M3539V,ORF1a:Q3332R,ORF1b:P314L,S:D614G 542 B.1.177.74 20.4073 92.1423 1.14627 1.14025 1.15233 1.12873e-13 88458 2020-12-20 N:G204R,N:R203K,ORF14:G50N,ORF1b:G2005S,ORF1b:P314L,S:D614G 543 B.1.177.16 14.5226 47.3609 1.14627 1.13781 1.15479 1.9699e-16 14282.5 2020-09-19 N:A211V,N:G204R,N:R203K,ORF14:G50N,ORF1a:D203N,ORF1a:D589G,ORF1a:G4203S,ORF1a:K2533R,ORF1a:S2396I,ORF1b:P314L,S:A522S,S:D614G,S:D936H,S:Q675R 544 B.1.177.19 22.3312 110.036 1.14626 1.14075 1.15179 1.01741e-16 25898.4 2020-09-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1049V,ORF1a:D4085G,ORF1a:K1202N,ORF1a:Q1592R,ORF1b:A302S,ORF1b:P314L,S:D614G,S:E1202Q,S:E484K,S:Q677H,S:T732S 545 B.1.177.71 22.4078 110.782 1.14622 1.14074 1.15173 9.6634e-16 42250 2020-11-13 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF9b:G38D,S:D614G 546 B.1.177.54 13.609 41.7518 1.1462 1.13718 1.15528 7.1171e-13 1.52274e+06 2020-09-16 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:Q2702H,ORF1a:S2981F,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 547 B.1.177.25 22.6871 113.522 1.14619 1.14078 1.15163 7.42192e-19 60593.2 2020-10-27 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V2117L,S:D614G 548 B.1.177.87 11.862 32.0303 1.14613 1.13581 1.15655 9.78871e-15 137264 2020-08-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1a:T2300I,ORF1b:P314L,S:D614G 549 B.1.177.2 18.2508 73.9919 1.14613 1.13941 1.15289 6.58288e-16 25895.3 2020-09-24 N:G204R,N:R203K,ORF10:Q29STOP,ORF14:G50N,ORF1b:P314L,ORF3a:G188S,ORF8:E59STOP,S:D614G 550 B.1.177.17 18.844 78.7833 1.1461 1.1396 1.15264 2.6588e-16 25196.3 2020-08-26 N:A211V,N:G204R,N:R203K,ORF14:G50N,ORF1a:D203N,ORF1a:D589G,ORF1a:K2533R,ORF1a:S2396I,ORF1b:P314L,S:A522S,S:A845S,S:D138Y,S:D614G,S:Q675R,S:S477N 551 B.1.177.50 10.754 26.5472 1.1461 1.13472 1.15758 2.40272e-15 223896 2020-09-20 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 552 B.1.177.3 15.374 52.9123 1.14609 1.13813 1.15412 1.61768e-29 198.102 2020-09-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:I2057T,ORF1a:K3353R,ORF1a:V862I,ORF1b:E735D,ORF1b:P314L,ORF8:Q27STOP,S:D614G,S:P1162S 553 B.1.177.4 17.2595 66.3238 1.14606 1.13897 1.1532 3.47638e-05 121725 2020-09-09 N:G204R,N:P151L,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1a:S1361P,ORF1b:A414V,ORF1b:P314L,S:D614G 554 B.1.177.33 13.5435 41.3634 1.14604 1.13701 1.15515 1.29047e-14 358358 2020-09-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P1666L,ORF1b:P314L,S:D614G 555 B.1.177.70 19.5553 84.7306 1.14603 1.13977 1.15233 8.92638e-19 3677.55 2020-11-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 556 B.1.177.44 6.93407 11.6894 1.14603 1.12846 1.16388 6.84683e-13 1.69447e+06 2020-08-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:M3695V,ORF1b:P314L,S:D614G 557 B.1.177.26 23.0445 117.078 1.14603 1.14071 1.15137 3.40521e-28 198.432 2020-10-16 N:G204R,N:G214S,N:R203K,N:T205A,ORF14:G50N,ORF14:M60I,ORF1a:I431M,ORF1b:P314L,S:D614G 558 B.1.177.49 35.222 271.337 1.14594 1.14247 1.14943 2.29316e-05 721965 2020-12-01 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 559 B.1.177.24 7.95525 15.0487 1.14584 1.13056 1.16132 1.05114e-14 135724 2020-08-31 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 560 B.1.1.97 8.70061 17.7824 1.1458 1.13183 1.15995 7.13252e-35 198.475 2020-07-03 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 561 B.1.177.55 14.632 48.0565 1.14573 1.13742 1.15411 2.49024e-13 438015 2020-09-10 N:A90T,N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P1567L,ORF1b:P314L,ORF1b:R2684I,S:D614G 562 B.1.539 16.6234 61.6276 1.14555 1.13825 1.1529 1.78845e-14 4473.74 2020-11-09 N:A398V,N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1a:P1786L,ORF1b:E245D,ORF1b:M2025I,ORF1b:P314L,ORF1b:T2084I,ORF3a:T223I,S:D614G 563 B.1.177.69 26.6112 155.599 1.14553 1.14097 1.15012 8.62118e-17 7188.96 2020-10-03 N:G204R,N:R203K,ORF14:G50N,ORF1a:L3644F,ORF1b:P314L,S:D614G 564 B.1.1.526 14.8438 49.4186 1.14536 1.13721 1.15357 4.30165e-16 3489.52 2020-12-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 565 D.5 16.6848 62.0726 1.14505 1.13784 1.15231 6.66623e-14 477681 2020-11-16 N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 566 B.1.177.14 4.85493 6.2203 1.14486 1.12034 1.16992 2.89545e-17 57095.3 2020-08-02 N:A211V,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 567 AM.1 26.4818 154.105 1.14477 1.14024 1.14932 3.49233e-18 339.577 2020-11-09 ORF1a:M2796I,ORF1a:R207C,ORF1a:V378I,ORF1b:D1869G,ORF8:G8STOP 568 B.1.1.303 10.7497 26.5267 1.14466 1.13355 1.15587 7.63423e-17 8268.93 2020-08-17 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 569 B.1.177.23 7.67785 14.0921 1.14457 1.12908 1.16027 1.48181e-14 1.93641e+06 2020-08-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:I4049V,ORF1b:P314L,ORF1b:T1774I,S:D614G 570 AE.5 19.3756 83.2079 1.14382 1.13773 1.14993 2.48593e-17 167179 2020-07-03 ORF1a:K3573E 571 B.1.258.16 24.0666 127.554 1.14375 1.13885 1.14866 2.09488e-16 48977.8 2020-11-30 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:S12F 572 B.1.543 12.3666 34.7033 1.14359 1.13411 1.15315 1.27242e-14 4213.23 2020-11-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:S2030L,ORF1b:P314L,ORF1b:S1089L,S:D614G,S:M153T 573 B.1.258.22 12.9284 37.8079 1.14338 1.13434 1.15249 3.13591e-14 2.03404e+06 2020-12-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209S,ORF1b:E2284G,ORF1b:P314L,S:D614G 574 B.1.258.20 17.8205 70.6111 1.14336 1.13679 1.14995 1.70403e-14 441855 2020-11-14 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:R1315C,ORF1b:S442C,S:D614G 575 B.1.222 6.65314 10.8433 1.14331 1.12583 1.16105 2.4469e-16 51574.4 2020-03-23 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:T19M,ORF14:V49L,ORF1a:D762G,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T1820I,ORF1b:E1264D,ORF1b:P314L,ORF3a:D155Y,ORF3a:L83F,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 576 B.1.258.18 33.078 239.512 1.14329 1.13975 1.14683 2.19567e-14 16707.4 2020-10-15 M:I82T,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1306S,ORF1a:P2046L,ORF1a:P2287S,ORF1a:T3255I,ORF1a:T3646A,ORF1a:V1750A,ORF1a:V2930L,ORF1b:A1918V,ORF1b:G662S,ORF1b:P1000L,ORF1b:P314L,ORF3a:S26L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:D614G,S:L452R,S:P681R,S:Q173H,S:T19R,S:T478K,S:T95I 577 B.1.1.77 12.5326 35.6063 1.14327 1.13397 1.15265 2.55972e-18 897.184 2020-05-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 578 B.1.1.219 8.34654 16.4541 1.14319 1.12927 1.15728 2.66829e-09 120909 2020-09-23 N:D3L,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 579 B.1.258.12 16.8399 63.2063 1.14312 1.13621 1.15007 9.60312e-19 2261.23 2020-10-06 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 580 B.1.258.11 13.622 41.8293 1.14312 1.13458 1.15172 4.59471e-15 114368 2020-09-21 N:G204R,N:G34W,N:R203K,ORF14:G50N,ORF1b:K2557R,ORF1b:P314L,S:D614G 581 B.1.258.6 17.2144 65.9851 1.1431 1.13634 1.1499 2.28732e-18 250.57 2020-09-24 M:R107H,N:G204L,N:R203K,ORF14:E51STOP,ORF14:G50N,ORF1a:K798N,ORF1b:I235T,ORF1b:P314L,ORF3a:T223I,ORF7a:T14I,S:D614G 582 D.4 19.4543 83.873 1.14308 1.1371 1.1491 2.69433e-17 51950.3 2020-08-15 N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 583 B.1.258.19 31.1558 212.675 1.14304 1.1393 1.14679 1.86647e-18 9122.21 2020-11-23 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 584 B.1.258.3 9.82434 22.3543 1.14288 1.13111 1.15478 3.71648e-19 323.678 2020-08-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:T223I,S:D614G 585 B.1.258.7 18.1279 73.0175 1.14286 1.13647 1.14929 9.06897e-19 226.729 2020-09-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:D935G,ORF1a:M3655I,ORF1b:P314L,ORF1b:S638I,ORF3a:T223I,ORF3a:V77I,S:D614G,S:G1251V 586 G.1 18.1491 73.1853 1.14243 1.1361 1.14881 1.64977e-18 5820.86 2020-09-18 N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 587 B.1.428.3 26.373 152.855 1.14189 1.13756 1.14623 4.3553e-16 310572 2020-06-22 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:A1078S,S:D614G,S:G769V 588 B.1.258.2 7.30092 12.8449 1.14174 1.12624 1.15745 1.01278e-15 1.80974e+06 2020-07-15 M:I82T,N:G204R,N:G212C,N:R203K,ORF14:G50N,ORF1a:M902V,ORF1a:N449D,ORF1a:R2115I,ORF1a:T4364I,ORF1a:V3566I,ORF1a:V3653F,ORF1b:P1000L,ORF1b:P314L,ORF1b:S220N,ORF3a:S171L,S:D614G,S:D839V,S:E484K,S:E780A,S:F306L,S:S494P,S:T1027I 589 B.1.610 10.9068 27.2718 1.1417 1.13131 1.15218 2.38664e-22 306.783 2020-08-04 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1a:V1887I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 590 B.1.1.384 22.554 112.213 1.14164 1.13661 1.14669 6.40191e-16 27251.1 2020-12-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:D83G,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 591 B.1.36.22 19.219 81.8912 1.1416 1.1357 1.14753 1.49622e-06 185889 2020-09-20 N:G204R,N:R203K,ORF14:G50N,ORF1a:E913D,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T1542I,ORF1b:P314L,S:D614G,S:K1073N,S:S255F 592 AS.2 16.8243 63.0914 1.14134 1.13464 1.14809 3.10982e-26 204.407 2020-10-09 N:S197L,ORF14:Q44STOP,ORF1a:F3071Y,ORF3a:G196V,ORF3a:L108F,ORF3a:Q213K,ORF8:L84S 593 B.1.551 7.74747 14.3291 1.14075 1.1264 1.15528 4.93544e-13 401949 2020-11-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:S318L,ORF1b:P314L,S:D614G 594 AQ.2 11.5378 30.3711 1.14056 1.13093 1.15026 1.91669e-26 215.379 2020-08-24 ORF1a:F3071Y,ORF8:L84S 595 B.1.36.12 8.72131 17.8617 1.14026 1.12762 1.15304 7.11816e-23 235.938 2020-07-29 N:G204R,N:G212V,N:R203K,ORF14:A59S,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T4090I,ORF1b:P314L,S:D614G,S:Q677H 596 AM.2 35.0994 269.463 1.14025 1.1371 1.14341 1.15922e-17 768.007 2020-11-01 ORF1a:M2796I,ORF1a:R207C,ORF1a:V378I,ORF1b:A1225D 597 AD.2.1 25.2101 139.809 1.14022 1.13583 1.14462 1.93591e-15 42507.7 2020-12-11 N:P13L,ORF1a:S2625F,ORF1a:T2016K,ORF1b:A88V,ORF9b:P10S 598 AD.1 24.9584 137.063 1.14012 1.1357 1.14456 2.29907e-18 6144.2 2020-11-23 N:P13L,ORF1a:S2015R,ORF1a:T2016K,ORF1b:A88V,ORF9b:P10S 599 B.1.1.315 19.9309 87.9591 1.13993 1.13441 1.14547 10.1324 144421 2020-08-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L1507F,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:A701V,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 600 B.1.1.428 16.6378 61.7318 1.1397 1.13312 1.14631 2.91266e-13 1.86626e+06 2020-11-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 601 AD.2 6.32761 9.90486 1.13969 1.12249 1.15716 7.09387e-10 682168 2020-08-02 N:P13L,ORF1a:S2015R,ORF1a:T2016K,ORF1b:A88V,ORF9b:P10S 602 B.1.1.357 23.6312 123.036 1.13949 1.13487 1.14412 3.06568e-20 411.121 2020-07-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:P3767L,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 603 B.1.591 11.1025 28.2147 1.13949 1.12969 1.14937 3.84655e-17 14468.4 2020-10-01 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:L3694F,ORF1a:T2936I,ORF1a:T3284I,ORF1b:A2513S,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 604 B.1.1.216 6.45288 10.2607 1.1394 1.12261 1.15643 7.13256e-11 2.12669e+06 2020-05-06 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:E194K,S:D614G 605 B.1.36.25 17.8066 70.5029 1.13928 1.13319 1.14541 1.92293e-17 13651.2 2020-11-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 606 B.1.580 9.2799 20.0715 1.13916 1.12751 1.15092 2.40021e-15 50761.9 2020-08-24 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 607 B.1.1.339 5.5653 7.88323 1.13883 1.1196 1.15839 0.029548 1367.27 2020-03-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF7a:Q94L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:W152R 608 B.1.433 16.6249 61.6381 1.13839 1.13197 1.14485 4.94881e-15 130175 2020-09-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:Q3859H,ORF1b:P314L,S:D614G 609 B.1.469 6.67468 10.907 1.13792 1.12214 1.15392 1.22704e-05 155691 2020-11-17 N:A35T,N:G204R,N:R203K,ORF14:G50N,ORF1a:K4039R,ORF1a:S3149F,ORF1b:P314L,ORF1b:Q866H,ORF3a:K75N,S:D614G 610 B.1.1.98 6.53552 10.499 1.13771 1.12166 1.15399 4.51741e-23 521.099 2020-04-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF7a:G38R,ORF8:F120L,ORF8:I121L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 611 AM.4 20.3177 91.348 1.13761 1.13244 1.14281 2.19293e-17 8185.37 2020-11-01 ORF8:L84S 612 B.1.1.86 6.79214 11.2577 1.13668 1.12154 1.15202 2.84105e-36 210.297 2020-05-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E2607K,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 613 B.1.409 12.151 33.5479 1.13642 1.12797 1.14492 4.37955e-15 95139.5 2020-10-20 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,ORF6:I33T,S:D614G 614 B.1.463 15.5984 54.4284 1.13619 1.12964 1.14279 2.00428e-17 2191.1 2020-09-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:K3353R,ORF1a:K623Q,ORF1b:P314L,S:D614G 615 L.3 5.84675 8.60095 1.13494 1.11797 1.15217 1.46549e-05 724784 2020-12-06 N:M234I,N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,ORF8:V100L,S:D614G,S:L452R,S:S13I,S:W152C 616 B.1.214 18.1762 73.3996 1.13486 1.12938 1.14036 7.50939e-14 620618 2020-05-06 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 617 B.1.460 30.5795 204.941 1.1341 1.13089 1.13731 4.08669e-22 226.064 2020-10-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:K1230N,ORF1b:I2273S,ORF1b:P314L,S:D614G 618 B.1.1.483 23.1945 118.587 1.13355 1.12937 1.13774 1.14477e-17 3336.14 2020-12-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 619 C.16 3.60111 3.80009 1.1334 1.10684 1.16061 0.000286165 3.0912e+06 2020-10-08 N:D401Y,N:M234I,ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF3a:D155Y,ORF3a:Q57H,ORF8:S24L,S:D614G,S:T20I 620 B.1.588 6.85439 11.446 1.13237 1.11864 1.14628 5.13407e-14 131772 2020-09-11 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:T2936I,ORF1a:T3284I,ORF1b:A2513S,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 621 B.1.588.1 19.7551 86.4404 1.13169 1.12698 1.13643 3.41443e-17 385401 2020-11-28 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:M3862T,ORF1a:T2936I,ORF1a:T3284I,ORF1b:A2513S,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 622 B.1.599 11.0085 27.7599 1.13054 1.12231 1.13884 8.50139e-16 74843.2 2020-09-14 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 623 B.1.1.174 10.367 24.7564 1.13012 1.12146 1.13884 1.64461e-06 63909.6 2020-05-20 N:A220V,N:P199S,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 624 B.1.1.351 4.98041 6.4986 1.12944 1.11177 1.1474 4.56292e-13 517289 2020-10-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:D144Y,ORF1a:I2230T,ORF1a:N460Y,ORF1a:T1001I,ORF1b:P314L,ORF8:F120L,ORF8:I121L,ORF8:K68STOP,ORF8:L118V,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 625 B.1.36.2 27.1761 162.206 1.129 1.12577 1.13224 5.95177e-26 221.618 2020-10-14 M:I82T,N:G204R,N:G212V,N:K256R,N:R203K,ORF14:A59S,ORF14:G50N,ORF1a:A859V,ORF1a:D1639N,ORF1a:D2980N,ORF1a:D3222N,ORF1a:E102K,ORF1a:G3278S,ORF1a:L3691S,ORF1a:P2287S,ORF1a:S3687L,ORF1a:T1246I,ORF1a:T4090I,ORF1b:D1028Y,ORF1b:P1452L,ORF1b:P314L,ORF3a:Y113H,ORF7b:A43S,S:A899S,S:D614G,S:L452R,S:Q677H,S:R346S,S:S12F,S:S477N,S:W152R 626 B.1.550 17.5124 68.2393 1.12879 1.12381 1.13379 9.3877e-18 5115.67 2020-10-08 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:Q57H,S:D614G 627 B.1.160.23 9.68245 21.7471 1.12849 1.11956 1.13749 4.89617e-22 239.68 2020-09-20 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 628 B.1.438 8.61863 17.4701 1.12815 1.1182 1.13818 4.86638 100726 2020-08-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:T2952I,ORF1b:P2256S,ORF1b:P314L,ORF1b:T1522I,ORF7a:Q94L,S:D614G,S:V1122L 629 B.1.616 7.14897 12.3594 1.12761 1.11578 1.13956 3.93582e-12 12956.9 2021-02-10 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:R346K,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 630 B.1.205 8.92795 18.6636 1.12666 1.1174 1.136 51403.4 3.2937e+06 2020-03-08 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:N501Y,S:V1176F 631 B.1.311 5.44559 7.5881 1.12651 1.11142 1.14181 1.35792e-11 2.36833e+06 2020-08-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:Q57H,S:D614G 632 B.1.258.15 13.2806 39.8237 1.12646 1.12026 1.1327 4.45921e-17 4362.21 2020-11-30 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 633 B.1.1.136 15.336 52.6584 1.12635 1.12099 1.13173 8.95164e-25 269.57 2020-06-13 N:A220V,N:A55S,ORF10:V30L,ORF14:L67F,ORF1a:K2589R,ORF1a:P1640S,ORF1b:P314L,ORF7a:A66T,S:A222V,S:D614G,S:E583Q 634 B.1.517 5.57951 7.91865 1.12621 1.11158 1.14102 2.32589e-13 1.3149e+06 2020-08-25 M:A2V,N:G204R,N:M322I,N:R203K,ORF14:G50N,ORF1a:T727I,ORF1b:P314L,ORF3a:G254V,S:D614G 635 B.1.1.322 8.96814 18.8217 1.12603 1.11695 1.13519 4.7219e-15 61334.8 2020-10-05 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69Y,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 636 B.1.1.327 23.2836 119.488 1.12595 1.12245 1.12946 4.82424e-18 1461.07 2020-11-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A2345V,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 637 B.1.1.324 34.2497 256.657 1.12587 1.1235 1.12826 1.31838e-13 184583 2020-06-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:K3353R,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 638 B.1.242 10.5599 25.6409 1.12583 1.11815 1.13356 3.2816e-18 67083.3 2020-06-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:N2187S,ORF1b:P314L,S:D614G 639 B.1.421 13.0908 38.7307 1.12565 1.11948 1.13186 1.2366e-18 2465.46 2020-08-21 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1a:A2529V,ORF1a:A872T,ORF1a:F3605L,ORF1a:S2103F,ORF1b:K2063N,ORF1b:P314L,ORF6:I33T,ORF7b:E33A,ORF8:V114I,S:D614G,S:E484K 640 AS.1 16.3526 59.6813 1.12551 1.12058 1.13046 2.7788e-25 226.778 2020-11-08 ORF1a:F3071Y,ORF3a:G196V,ORF8:L84S 641 B.1.229 3.73445 4.02654 1.12543 1.10406 1.1472 1.83792e-19 11048 2020-03-31 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:H388Y,ORF1a:K1795Q,ORF1a:P1862L,ORF1a:S1188L,ORF1a:T4355I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 642 B.1.568 3.36691 3.41996 1.12539 1.10174 1.14954 1.89784e-11 104769 2020-11-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3548V,ORF1a:T1854I,ORF1b:P314L,S:D614G 643 B.45 3.30713 3.3265 1.12519 1.10124 1.14966 2.54876e-36 409.084 2020-03-21 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:L275F,ORF3a:Q57H,S:D614G 644 B.1.615 11.3252 29.3078 1.12505 1.11803 1.13212 2.85295e-22 252.594 2020-07-31 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:H374Y,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1a:V1887I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:A701V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 645 B.1.423 8.81972 18.2413 1.12496 1.11597 1.13402 2.97088e-18 7680.74 2020-11-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V1814F,S:D614G,S:P251L 646 D.2 11.6441 30.9105 1.12482 1.11803 1.13166 2.27619e-09 2.31391e+07 2020-05-25 N:T205I,ORF14:L52F,ORF1a:L3694F,ORF1a:S3158T,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF1b:P976L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 647 B.1.240.2 18.5517 76.4036 1.12478 1.12052 1.12906 2.98428e-22 245.317 2020-09-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:L4037F,ORF1b:P314L,S:D614G,S:H1101Y 648 B.12 2.54998 2.26636 1.12465 1.0941 1.15606 1.06481 15205.6 2020-02-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 649 C.28 9.54663 21.174 1.12465 1.11641 1.13295 2.54189e-20 992.668 2020-05-04 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G,S:S939F 650 B.1.1.158 6.03079 9.08843 1.12457 1.11158 1.13772 3.17302e-13 54326.2 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:S929T 651 B.1.565 5.07319 6.70862 1.12425 1.10895 1.13976 1.9624e-08 590728 2020-07-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:G1946S,ORF1a:K2622N,ORF1a:S3732A,ORF1a:V3976F,ORF1b:K709N,ORF1b:P314L,S:D614G,S:T385I 652 B.1.139 7.09166 12.1788 1.12423 1.11327 1.1353 2.24214e-14 86884.7 2020-06-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1184D,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 653 B.1.1.385 6.84606 11.4207 1.12405 1.11275 1.13547 2.27448e-13 535078 2020-09-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4087I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 654 B.1.1.487 5.27431 7.17635 1.12273 1.10858 1.13705 1.56572e-13 384875 2020-10-29 M:A2S,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 655 B.1.396 7.5893 13.7937 1.12245 1.11268 1.13231 7.34175e-14 514829 2020-06-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1b:A2132V,ORF1b:P314L,S:D614G 656 B.1.605 11.3881 29.6206 1.12185 1.11543 1.1283 1.23434e-12 86438.4 2020-11-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:D343G,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:L106F,ORF3a:S165F,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 657 B.1.1.62 12.6974 36.5148 1.12154 1.11583 1.12727 1.15824e-20 7355.31 2020-07-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:G1125C,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 658 A.21 3.4431 3.54117 1.12151 1.10062 1.1428 14.3621 2.34703e+06 2020-09-13 ORF1b:P1936S,ORF3a:G251V 659 B.1.1.425 12.5333 35.61 1.12109 1.11538 1.12682 1.33039e-20 2475.62 2020-10-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 660 B.1.411 6.40683 10.1291 1.12083 1.10977 1.13201 2.24608e-11 3.04314e+06 2020-10-23 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:S171L,ORF6:I33T,S:D614G,S:Q414R 661 B.1.531 12.5222 35.5494 1.12081 1.11514 1.12651 7.48752e-25 234.254 2021-01-02 N:G204R,N:R203K,N:T76I,ORF14:G50N,ORF1b:P314L,ORF9b:P73S,S:D614G 662 B.1.1.416 7.03271 11.9945 1.1208 1.11073 1.13097 9.58404e-15 133636 2020-08-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 663 B.1.1.394 15.3007 52.422 1.12078 1.11614 1.12544 3.18604e-20 1387.02 2020-08-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 664 B.1.1.256 4.72324 5.93531 1.12074 1.1058 1.13589 1.47352e-36 233.98 2020-06-01 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M1586I,ORF1a:T1001I,ORF1b:D2499N,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D178H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 665 B.1.36.28 12.6815 36.4268 1.1206 1.11504 1.1262 1.18864e-17 10235.5 2020-09-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3143V,ORF1a:E1013K,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T4175I,ORF1b:P314L,S:D614G,S:L452R 666 B.1.534 17.3453 66.9703 1.12059 1.11652 1.12467 4.5936e-18 3278.1 2020-11-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:T4087I,ORF1a:V1295A,ORF1b:P314L,ORF3a:W69C,S:D614G 667 B.1.234 3.93243 4.37626 1.12043 1.10266 1.13848 7.53896e-13 2.12703e+06 2020-06-21 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 668 B.1.428.2 13.0804 38.6716 1.12027 1.11492 1.12564 6.27888e-15 30215.1 2020-09-21 N:D341N,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:G769V 669 B.1.342 8.00961 15.2401 1.11986 1.11125 1.12854 1.32044e-18 24523 2020-05-23 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 670 B.1.428.1 11.0453 27.9374 1.11984 1.11359 1.12613 1.29564e-18 6660.3 2020-06-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:L2146F,ORF1a:L3951F,ORF1a:V1211F,ORF1b:P314L,S:D614G 671 B.1.160.22 8.38944 16.6122 1.11906 1.11103 1.12716 2.13414e-14 551172 2020-10-28 N:G204R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1b:P314L,ORF7a:T39I,S:D614G 672 B.1.1.405 17.6439 69.2465 1.11829 1.11455 1.12204 1.77094e-20 1640.86 2020-09-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 673 AC.1 14.7553 48.8469 1.11819 1.11373 1.12266 1.61425e-25 238.498 2020-11-09 N:P13L,ORF1a:T2016K,ORF1b:A88V,ORF9b:P10S 674 B.1.177.31 11.0765 28.0885 1.11817 1.11224 1.12413 3.3247e-16 40786.8 2021-01-18 N:G204R,N:R203K,ORF14:G22E,ORF14:G50N,ORF1a:K3353R,ORF1a:T4090I,ORF1b:I2687V,ORF1b:P314L,S:D614G 675 B.1.189 5.49055 7.69822 1.11748 1.1058 1.12929 3.10159e-14 534763 2020-04-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:S2103F,ORF1b:P314L,ORF3a:L46F,S:D614G 676 B.1.1.286 6.63889 10.8013 1.11668 1.10725 1.12618 7.43327e-19 2946.93 2020-08-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:C1833R,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 677 B.1.407 5.1173 6.80975 1.11607 1.10409 1.12817 9.4864e-35 241.716 2020-06-30 N:D144N,N:G204R,N:R203K,ORF14:G50N,ORF1b:A440V,ORF1b:P314L,S:D614G 678 B.1.523 4.59146 5.65742 1.11604 1.10272 1.12953 24.99 228002 2020-07-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1b:P314L,S:D614G,S:S477N 679 B.1.1.446 16.1032 57.9168 1.11566 1.1119 1.11945 2.83258e-19 17653.9 2020-10-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:C3423F,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L1507F,ORF1a:S3675T,ORF1a:T1001I,ORF1a:T2910I,ORF1b:P314L,ORF8:A65V,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 680 B.1.1.182 11.8381 31.9066 1.11565 1.11053 1.1208 0.781043 475.142 2020-09-14 N:T205I,ORF14:L52F,ORF1b:P314L,S:D614G 681 AK.2 13.9666 43.9045 1.11561 1.11128 1.11997 2.48247e-19 18097.8 2020-10-06 ORF1a:P271S,ORF1a:V378I,ORF8:S24L 682 B.1.1.63 1.86081 1.48942 1.11541 1.08348 1.14828 9.26144e-07 1.14701e+07 2020-07-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:G1125C,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4265I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 683 B.1.1.99 12.3568 34.6503 1.11522 1.11038 1.12008 1.85586e-17 9938.98 2020-06-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF7a:G38R,ORF8:F120S,ORF8:I121V,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 684 C.4 12.0459 32.9918 1.1148 1.10991 1.11971 5.88908e-11 1.64144e+06 2020-08-14 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R 685 B.1.1.316 3.91503 4.34487 1.11461 1.09972 1.1297 1.83962e-12 382944 2020-10-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A3143V,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:A54V,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:G1219V,S:N501Y,S:P681H,S:S494P,S:S982A,S:T716I 686 B.1.1.176 1.36057 1.02191 1.11435 1.07242 1.15792 4.37724e-15 384663 2020-03-17 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:E37K,ORF1a:T1567I,ORF1a:T1754I,ORF1a:V1339I,ORF1a:V3718F,ORF1b:P314L,ORF3a:S166L,S:A222V,S:D614G 687 B.1.529 8.63421 17.5292 1.11413 1.10747 1.12084 6.05089e-22 44320.2 2020-04-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:S1102G,ORF1b:P314L,S:D614G 688 B.1.536 10.2844 24.3829 1.11413 1.10853 1.11976 2.89323e-18 3783.15 2020-11-05 N:A398V,N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1b:E245D,ORF1b:M2025I,ORF1b:P314L,ORF1b:T2084I,ORF3a:T223I,S:D614G 689 B.1.94 4.99553 6.53257 1.11324 1.1021 1.12449 2.14656e-20 1921.78 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:L1249P,ORF1b:P314L,S:D614G 690 B.1.1.159 3.7391 4.03457 1.11241 1.09799 1.12701 1.58247e-05 594256 2020-09-25 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:E583D 691 B.1.438.4 11.6776 31.081 1.11228 1.10766 1.11691 1.45255e-16 5757.19 2020-11-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:E102K,ORF1b:P314L,ORF1b:V1493L,S:D614G,S:H207R 692 B.1.1.458 5.16416 6.91806 1.1122 1.10182 1.12267 1.10178e-15 35335.3 2020-06-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:H182Y,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 693 B.1.349 5.01046 6.56623 1.11219 1.1015 1.12299 2.3487e-15 238232 2020-07-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3392V,ORF1a:E754A,ORF1b:P314L,S:D614G,S:S1252P 694 B.1.1.111 6.85919 11.4606 1.11218 1.10437 1.12005 9.90844e-14 487251 2020-05-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 695 B.1.400 4.50637 5.48184 1.11132 1.09983 1.12293 1.56589e-13 338705 2020-05-12 N:D402Y,N:G204R,N:N8T,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1a:L1762F,ORF1b:P314L,ORF3a:T223I,ORF6:F2S,ORF9b:I5L,S:A688S,S:D614G,S:T95I 696 B.1.408 6.86807 11.4876 1.11126 1.10372 1.11884 1.85487e-08 2.51234e+06 2020-08-18 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 697 B.1.241 4.16975 4.81682 1.1111 1.09879 1.12354 1.27198e-13 780440 2020-04-24 E:E8D,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3497V,ORF1a:L3644F,ORF1b:P314L,S:D614G,S:D839Y 698 B.1.239 4.70639 5.89938 1.11109 1.10018 1.12211 1.1414e-12 271160 2020-05-12 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T951I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:N679K,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 699 B.1.417 15.6901 55.0535 1.11102 1.10775 1.11431 1.29703e-18 12847.3 2020-07-28 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:T175I,ORF6:I33T,S:D614G 700 B.1.184 12.1409 33.4941 1.11097 1.10675 1.11521 1.06615e-21 6654.63 2020-06-18 N:G204R,N:R203K,ORF14:A38V,ORF14:G50N,ORF1a:R398C,ORF1b:P314L,S:D614G,S:L176F 701 B.1.403 6.85992 11.4628 1.11094 1.10349 1.11844 1.04471e-17 284707 2020-08-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:A440V,ORF1b:P314L,S:D614G 702 B.1.1.305 3.79474 4.13133 1.11093 1.0975 1.12452 3.08599e-07 242323 2020-07-26 N:D3L,N:G204P,N:R203E,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 703 B.1.381 8.04609 15.3692 1.11088 1.10454 1.11726 3.16007e-17 75206.2 2020-05-06 N:G204R,N:R203K,ORF10:Q29STOP,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:A1609S,ORF1b:L293S,ORF1b:M657T,ORF1b:P314L,ORF3a:H78Y,ORF9b:A57V,S:D614G,S:N501T 704 B.1.554 4.70713 5.90096 1.11085 1.10004 1.12176 1.02352e-21 19747.2 2020-06-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:D3042N,ORF1b:P314L,S:D614G 705 B.1.188 7.46222 13.3712 1.1108 1.10398 1.11766 8.82279e-20 1856.79 2020-07-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:S2103F,ORF1b:P314L,ORF3a:L46F,S:D614G 706 B.1.238 3.48428 3.60766 1.1108 1.09625 1.12554 2.7744e-18 347.362 2020-05-24 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:K3573R,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 707 B.1.231 4.09774 4.68067 1.11078 1.09841 1.12329 1.54119e-35 251.03 2020-06-09 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:V3449F,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 708 B.1.556 7.21409 12.5663 1.11078 1.10373 1.11787 3.77144e-16 54690.9 2020-06-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3755S,ORF1a:D3042N,ORF1b:D1381Y,ORF1b:K469N,ORF1b:P314L,ORF3a:G224C,S:D614G 709 B.1.235 4.94829 6.42673 1.11071 1.10048 1.12103 6.21156e-23 399.214 2020-06-13 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 710 B.1.558 4.09958 4.68413 1.11069 1.09837 1.12315 2.57846e-14 357923 2020-05-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:D3042N,ORF1b:P314L,ORF3a:P104L,S:A1078T,S:D614G 711 B.1.240.1 6.79948 11.2798 1.11063 1.1032 1.1181 4.26461e-14 658642 2020-08-11 N:G204R,N:N196S,N:R203K,ORF14:G50N,ORF14:I43V,ORF1a:A3209V,ORF1a:P1640S,ORF1a:V1020F,ORF1b:P314L,ORF1b:R1736K,S:D614G 712 B.1.233 5.50094 7.72381 1.11061 1.10144 1.11985 6.65101e-20 2103.18 2020-06-24 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:S2947N,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 713 B.1.1.434 3.71883 3.99963 1.11059 1.09707 1.12429 5.48539e-10 391931 2020-08-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69S,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 714 B.1.402 6.77557 11.2079 1.11058 1.10314 1.11807 7.61491e-18 2482.62 2020-07-08 N:G204R,N:R203K,ORF14:G50N,ORF1b:P218L,ORF1b:P314L,ORF1b:S997P,ORF1b:T132I,S:D614G 715 B.1.405 7.05537 12.0651 1.11055 1.10341 1.11773 5.18317e-17 25285.2 2020-07-21 N:G204R,N:Q240K,N:R203K,ORF14:G50N,ORF1b:A440V,ORF1b:P314L,S:D614G 716 C.29 11.4659 30.0093 1.11048 1.1061 1.11488 1.2598e-13 486190 2020-07-23 N:A220V,N:D377Y,ORF14:L67F,ORF1a:G1419C,ORF1a:L4037F,ORF1a:T265I,ORF1b:A440V,ORF1b:P314L,ORF3a:Q57H,ORF3a:S171L,ORF8:S24L,ORF8:S69L,S:D614G 717 B.1.602 5.7145 8.25952 1.1104 1.10164 1.11922 5.72366e-18 15285.7 2020-07-30 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y145D,S:Y505H 718 B.1.397 3.96314 4.43196 1.11035 1.09778 1.12307 5.14782e-15 122399 2020-05-08 N:G204R,N:R203K,ORF14:G50N,ORF1a:A354V,ORF1a:D1036E,ORF1b:P314L,ORF3a:Q185H,ORF3a:Y109C,S:D614G 719 K.3 5.67705 8.16419 1.1103 1.10152 1.11915 5.41137e-17 336040 2020-09-22 N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1a:T3459M,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 720 B.1.36.18 4.10084 4.6865 1.1103 1.09817 1.12256 3.21709e-13 536912 2020-09-01 N:G204R,N:G212V,N:R203K,ORF14:A59S,ORF14:G50N,ORF1a:A859V,ORF1a:D1639N,ORF1a:D3222N,ORF1a:E102K,ORF1a:G3278S,ORF1a:L3691S,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T4090I,ORF1b:P314L,ORF7b:A43S,S:D614G,S:L452R,S:Q677H,S:S12F 721 B.1.1.417 9.75389 22.0517 1.11026 1.10515 1.1154 1.43486e-19 6348.88 2020-09-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T1682I,ORF1a:T333M,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 722 B.1.401 3.19745 3.15881 1.11012 1.0947 1.12576 3.93088e-17 44614.6 2020-06-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:P1640H,ORF1b:P314L,S:D614G 723 B.1.236 2.61983 2.35476 1.10983 1.09125 1.12872 6.42805e-07 6.94814e+06 2020-07-06 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:K3573R,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 724 B.1.140 6.65635 10.8528 1.10975 1.10243 1.11713 4.56067e-25 6394.08 2020-06-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:G100C,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:Y144S 725 B.1.96 5.28809 7.20902 1.10969 1.1005 1.11895 3.11491e-17 142690 2020-04-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF7a:A8S,S:D614G 726 B.1.240 2.27798 1.93951 1.10968 1.08847 1.13131 3.37763e-14 1.45553e+06 2020-06-15 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:P681R,S:R190S,S:T1027I,S:T20N,S:V1176F 727 B.1.128 5.11963 6.81511 1.10953 1.1001 1.11904 2.17947e-16 17796.3 2020-08-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 728 B.1.97 2.73432 2.50373 1.10952 1.09194 1.12739 0 253.15 2020-04-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:A23S,ORF7a:A8S,S:D614G,S:Q675H 729 B.1.1.56 12.9689 38.0373 1.10944 1.10572 1.11317 4.09921e-22 6470.55 2020-07-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 730 B.11 1.51939 1.16269 1.10842 1.07839 1.13929 254.661 188656 2020-03-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P2256L,ORF1b:P314L,S:D614G 731 C.31 11.7185 31.2905 1.10824 1.10433 1.11217 5.49345e-18 4350.49 2020-11-30 ORF1a:A3615V,ORF1b:P314L,ORF3a:Q57H,S:D614G 732 B.1.1.45 3.20968 3.17728 1.10814 1.094 1.12247 1.31593e-36 255.875 2020-06-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 733 AL.1 6.07106 9.19699 1.10766 1.10032 1.11505 7.18357e-18 9834.59 2020-11-05 ORF1a:N272H,ORF1a:V378I,ORF1b:A2132V 734 C.30 5.72778 8.29349 1.10761 1.09985 1.11544 7.74553e-18 13156.8 2020-08-10 M:A2V,N:S183Y,ORF14:L30I,ORF1a:T265I,ORF1b:M2025I,ORF1b:P314L,ORF3a:Q57H,S:D614G 735 C.30.1 5.62397 8.03008 1.10752 1.09964 1.11545 6.09116e-20 4951.67 2020-10-12 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 736 B.1.480 1.70065 1.33182 1.10734 1.08171 1.13357 3.46523e-07 440811 2020-07-13 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 737 C.5 11.2863 29.1154 1.10687 1.10305 1.1107 5.80974e-18 6827.21 2020-09-07 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 738 B.1.416.1 3.15916 3.10142 1.1067 1.09323 1.12033 2.20454e-10 1.19767e+06 2020-08-01 N:G204R,N:I292T,N:P168S,N:R203K,ORF14:G50N,ORF1b:P314L,ORF6:I33T,S:D614G 739 B.1.416 3.72669 4.01317 1.10661 1.09523 1.11812 0.062507 2.91057e+06 2020-05-28 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,ORF6:I33T,S:D614G 740 B.1.1.141 2.4201 2.10686 1.10619 1.08906 1.1236 5748.15 2.31759e+06 2020-10-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:K3839R,ORF1b:P314L,S:A222V,S:D614G 741 B.1.362.1 9.13159 19.4717 1.10618 1.10161 1.11076 8.12876e-30 259.886 2020-09-30 N:G204R,N:Q7K,N:R203K,ORF14:G50N,ORF1a:E1205K,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T654A,ORF1b:P314L,ORF1b:S2563A,ORF3a:S74F,ORF8:I71T,S:D253G,S:D614G 742 S.1 9.62347 21.4972 1.10603 1.10173 1.11035 2.01124e-16 76489.6 2020-08-28 ORF1a:L3201P,ORF1a:T265I,ORF1b:P314L,ORF1b:Q1011H,ORF3a:P42L,ORF3a:Q57H,ORF8:T11I,S:D253G,S:D614G,S:S477N,S:T95I 743 B.1.36.35 1.93573 1.56592 1.10579 1.08481 1.12718 1.75403e-12 566208 2020-10-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T1597I,ORF1b:P314L,S:D614G 744 B.1.36.1 1.81425 1.44278 1.10536 1.08346 1.12771 1.10625e-06 2.29719e+06 2020-08-11 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF1b:Q2555R,S:D614G 745 B.1.36.7 3.79453 4.13096 1.10509 1.0947 1.11558 1.81451e-06 150381 2020-10-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:K2143R,ORF1a:T1246I,ORF1b:P314L,S:D614G 746 B.1.36.16 2.16898 1.81611 1.10508 1.08698 1.12347 9.49074e-11 1.10028e+07 2020-05-26 N:G204R,N:G212V,N:R203K,ORF14:A38V,ORF14:A59S,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T4090I,ORF1a:Y3723C,ORF1b:L1681F,ORF1b:P314L,S:D614G,S:N641S,S:Q677H 747 B.1.36 2.06721 1.70466 1.10501 1.0861 1.12425 3132.41 1.69245e+07 2020-03-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 748 B.1.1.263 2.61331 2.34643 1.1049 1.08999 1.12001 0.00133602 7.66647e+06 2020-04-26 N:D3L,N:G204R,N:Q389H,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:I2278V,ORF1a:S3675T,ORF1a:T1001I,ORF1b:E1871G,ORF1b:K1383R,ORF1b:P314L,ORF3a:V77F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:Y144S 749 B.1.1.396 4.64961 5.77916 1.10482 1.09645 1.11326 0.000748635 243406 2020-09-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V327I 750 B.1.36.24 3.21279 3.18198 1.10482 1.09273 1.11704 28.5321 62753.1 2020-11-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 751 B.1.36.19 5.17525 6.94384 1.10477 1.09727 1.11233 1.84495e-11 1.01945e+06 2020-10-19 M:I82T,N:G204R,N:G212V,N:R203K,ORF14:A59S,ORF14:G50N,ORF1a:A859V,ORF1a:D1639N,ORF1a:D2980N,ORF1a:D3222N,ORF1a:E102K,ORF1a:G3278S,ORF1a:L3691S,ORF1a:P2287S,ORF1a:S3687L,ORF1a:T1246I,ORF1a:T4090I,ORF1b:D1028Y,ORF1b:P314L,ORF7b:A43S,S:A899S,S:D614G,S:L452R,S:Q677H,S:R346S,S:S12F,S:W152R 752 B.1.36.38 3.94806 4.40455 1.10473 1.09493 1.11462 8.57752e-13 643728 2020-07-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 753 B.1.1.330 10.5619 25.65 1.10469 1.10102 1.10837 2.80752e-18 524.904 2021-01-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 754 B.1.36.17 3.34654 3.38796 1.10469 1.09316 1.11635 8.12351e-16 47193.5 2020-07-24 N:G204R,N:G212V,N:R203K,ORF14:A38V,ORF14:A59S,ORF14:G50N,ORF1a:G3278S,ORF1a:M1378I,ORF1a:Q1009R,ORF1a:T1246I,ORF1a:T4090I,ORF1a:T551I,ORF1b:P314L,S:D614G,S:Q677H 755 B.1.36.34 7.78736 14.4658 1.10467 1.09971 1.10966 6.27878e-17 48535.1 2020-10-22 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 756 B.1.36.37 12.178 33.6913 1.10464 1.10147 1.10783 5.8173e-19 4205.5 2020-10-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF8:F3L,S:D614G 757 B.1.36.36 9.87878 22.5896 1.10463 1.10072 1.10855 7.7275e-18 27428.9 2020-09-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 758 B.1.456 5.89478 8.72679 1.10462 1.09808 1.1112 3.13337e-13 559872 2020-11-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:M3669I,ORF1b:P314L,ORF1b:T1404M,S:D614G 759 B.1.1.452 13.094 38.7493 1.10458 1.10164 1.10754 1.6143e-06 9220.29 2020-09-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 760 B.1.1.343 9.79702 22.2367 1.10455 1.10063 1.10849 4.1303e-19 1124.97 2020-11-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:P361S,ORF1a:T1001I,ORF1b:I1293V,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:S98F,S:T716I 761 B.1.1.280 4.58793 5.65008 1.10454 1.09618 1.11296 9.46496e-06 1.83951e+06 2020-08-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A372T,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 762 B.1.88.1 3.4363 3.53026 1.10452 1.09338 1.11576 1.43327e-15 381718 2020-10-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:Y2141C,ORF1b:A302S,ORF1b:P314L,ORF3a:H78Y,ORF3a:K75N,ORF3a:M260I,S:D614G,S:E484K 763 B.1.36.10 11.4906 30.1336 1.10451 1.10117 1.10786 2.65072e-15 104249 2020-09-30 N:G204R,N:G212V,N:R203K,ORF14:A59S,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF3a:S171L,S:D614G 764 B.1.36.26 7.96242 15.0739 1.10448 1.09967 1.10931 3.52104e-17 32296.9 2020-09-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF8:R52K,S:D614G,S:S477N 765 B.1.1.229 6.59758 10.6799 1.10444 1.09865 1.11026 5.0262e-15 362583 2020-08-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1b:P314L,ORF8:Y73C,S:D614G,S:N501Y,S:T716I 766 B.1.577 0.491133 0.344109 1.10437 1.02933 1.18489 1.57059e-14 2.01841e+06 2020-04-19 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 767 B.1.36.8 2.04302 1.67871 1.10432 1.08585 1.1231 0.196229 1.95524e+06 2020-04-15 N:G204R,N:I157V,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:H1500Y,ORF1a:L3201P,ORF1a:L3694F,ORF1a:N2361K,ORF1a:T1246I,ORF1a:T2154I,ORF1a:T2283I,ORF1b:A373V,ORF1b:A576D,ORF1b:P314L,ORF1b:T1274I,ORF3a:S216P,S:D614G,S:L452Q,S:P479S,S:P9L,S:R190K 768 B.1.622 4.23775 4.94735 1.10427 1.09535 1.11327 1.8422e-10 1.71741e+06 2021-01-26 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 769 B.1.36.20 7.22302 12.5948 1.10425 1.09901 1.10951 2.83162e-19 2210.72 2020-08-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:G728C,ORF1a:T1246I,ORF1b:P314L,S:D614G,S:V213L 770 B.1.1.333 2.841 2.64711 1.10419 1.09096 1.11757 2.90905e-13 655958 2020-11-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 771 B.1.585 15.8168 55.9242 1.10397 1.10161 1.10634 1.06318e-18 1023.29 2020-10-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:T3284I,ORF1b:P314L,ORF8:E106STOP,S:D614G,S:E484K,S:P681H,S:T95I 772 B.1.560 1.71579 1.34639 1.10294 1.08255 1.1237 0.664427 5.47231e+06 2020-05-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:A566V,ORF1b:P314L,ORF1b:T1996M,ORF8:I58L,S:D614G,S:F565L 773 B.1.22.1 6.55621 10.5592 1.10254 1.09729 1.10781 305.071 88015.1 2020-09-08 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF3a:S74F,ORF3a:T151I,ORF8:E92K,ORF8:F120V,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:N679K,S:P26S,S:R190S,S:R246G,S:T1027I,S:T20N,S:T284I,S:V1176F 774 B.1.1.353 4.68537 5.85473 1.10234 1.09508 1.10964 3.25724e-14 195652 2020-12-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 775 B.1.1.354 2.33391 2.00449 1.10216 1.08779 1.11672 6.26172e-14 640197 2020-07-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 776 B.1.1.298 0.793103 0.565373 1.10196 1.06069 1.14484 2.13623e-07 182359 2020-06-08 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 777 B.1.1.224 2.36553 2.04172 1.10162 1.08789 1.11553 1.77767e-18 18381.3 2020-08-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1b:P314L,ORF8:Y73C,S:D614G,S:N501Y 778 B.1.1.449 11.827 31.8489 1.10151 1.09877 1.10426 1.05493e-06 12706.6 2020-09-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 779 B.1.1.368 2.50221 2.20696 1.10146 1.0886 1.11447 1.29348e-10 307869 2020-10-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E913D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF3a:P240S,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 780 B.1.1.389 4.45444 5.37617 1.10121 1.09408 1.10838 5.53555e-14 919210 2020-07-24 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 781 B.1.389 1.57484 1.21344 1.10113 1.08118 1.12144 1.06976e-15 1.59969e+06 2020-08-02 N:G204R,N:R203K,N:S194L,ORF14:G50N,ORF14:Q41STOP,ORF1b:P314L,ORF1b:T730I,ORF3a:H182Y,S:D614G,S:Y453F 782 B.1.1.444 12.0359 32.9389 1.10051 1.09798 1.10304 7.54723e-21 2389.76 2020-07-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 783 B.1.1.152 9.31332 20.208 1.10045 1.0972 1.10372 9.41361e-07 66690.3 2020-09-03 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:L2869F,ORF1b:P314L,S:A222V,S:D614G 784 B.1.1.87 5.29393 7.22288 1.10042 1.09471 1.10615 2.55327e-11 7155.39 2020-04-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E2607K,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 785 B.1.1.453 5.76929 8.40009 1.10035 1.09514 1.10559 7.76166e-20 1094.65 2020-10-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:G100C,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,ORF9b:G38V,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 786 B.1.1.117 4.01655 4.52975 1.10026 1.09282 1.10775 2.86529e-20 16809 2020-06-11 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:G18V,ORF3a:V77F,S:A222V,S:D614G,S:L18F 787 C.2 4.04889 4.58953 1.10019 1.09284 1.10758 2.27133e-13 450980 2020-07-12 ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF1b:T1076I,ORF3a:Q57H,ORF8:S24L,S:D614G 788 B.1.1.178 2.33068 2.00071 1.10011 1.08745 1.11292 4.06295e-36 271.435 2020-05-02 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:E37K,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 789 C.26 3.42656 3.51466 1.10006 1.09146 1.10873 2.69252e-10 2.54347e+06 2020-05-22 N:S187L,ORF14:H34Y,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 790 C.11 4.16958 4.81649 1.09994 1.09293 1.10701 9.58084e-11 2.31505e+06 2020-06-26 N:T205I,ORF14:L52F,ORF1a:A2330S,ORF1a:L3352F,ORF1a:P4337S,ORF1a:T265I,ORF1a:V3107G,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 791 B.1.1.234 5.27581 7.17989 1.09989 1.09436 1.10544 3.07658e-17 42133.7 2020-08-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1b:P314L,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:T716I 792 C.33 7.76534 14.3903 1.09982 1.09608 1.10357 1.69883e-14 161033 2020-06-17 ORF1a:T265I,ORF1b:P314L,ORF3a:L129F,ORF3a:Q57H,S:D614G 793 C.10 6.53993 10.5118 1.09981 1.09537 1.10426 1.6601e-19 5198.66 2020-04-22 ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF1b:V2237F,ORF3a:Q57H,ORF8:S24L,S:D614G,S:N1187Y 794 C.12 7.84714 14.672 1.09977 1.09608 1.10348 6.84363e-14 3.05197e+06 2020-08-13 M:D209Y,ORF1a:L3352F,ORF1a:T265I,ORF1a:V3747I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 795 C.21 10.8674 27.0838 1.09977 1.09711 1.10244 1.58358e-17 10206.4 2020-09-15 ORF1a:F190L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D253G,S:D614G 796 C.13 5.13113 6.84163 1.09977 1.09413 1.10544 7.82417e-14 454993 2020-05-05 N:D401Y,ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF3a:D155Y,ORF3a:Q57H,ORF8:S24L,S:D614G 797 C.20 8.35037 16.4682 1.09976 1.09629 1.10323 1.88326e-17 11800.1 2020-12-30 ORF1a:L3352F,ORF1a:L4037F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 798 C.14 2.79924 2.59045 1.09973 1.08945 1.11011 3.41631e-12 3.6557e+06 2020-03-28 N:D401Y,ORF1a:L3352F,ORF1a:T265I,ORF1b:P314L,ORF1b:S2212I,ORF1b:T2217I,ORF3a:D155Y,ORF3a:Q57H,ORF8:S24L,S:D178G,S:D614G 799 C.25 9.39736 20.5532 1.09972 1.09665 1.1028 1.15646e-16 212340 2020-03-20 ORF1a:G572E,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 800 C.9 9.2573 19.9795 1.09971 1.0966 1.10284 2.08907e-22 6681.87 2020-07-01 N:T205I,ORF14:L52F,ORF1a:S3158T,ORF1a:T265I,ORF1a:T2877I,ORF1b:D1183Y,ORF1b:P314L,ORF1b:P976L,ORF3a:Q57H,ORF8:A65V,S:D614G,S:L452R,S:S13I,S:W152C 801 C.32 9.60398 21.415 1.09971 1.09671 1.10272 5.39979e-14 159148 2020-05-19 N:D128Y,N:D377Y,ORF1a:A2994V,ORF1a:A3615V,ORF1a:P1977L,ORF1b:A1428V,ORF1b:P314L,ORF1b:Q1441H,ORF1b:S1898A,ORF3a:Q57H,ORF3a:S58N,S:D614G 802 C.18 7.07929 12.14 1.0997 1.09563 1.10378 2.41156e-17 31494.4 2020-09-04 ORF1a:L3352F,ORF1a:T265I,ORF1a:T3487A,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 803 C.34 6.39989 10.1093 1.09969 1.09519 1.10421 6.85077e-24 414.196 2020-08-07 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 804 C.6 4.4062 5.27902 1.09964 1.09314 1.10619 5.19473e-22 2090.45 2020-05-06 N:T205I,ORF14:L52F,ORF1a:S3158T,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF1b:P976L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 805 C.3 2.08607 1.72505 1.0996 1.08594 1.11342 3.25452e-36 272.684 2020-06-02 N:S194L,ORF14:Q41STOP,ORF1a:P1158S,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 806 C.22 11.0424 27.9236 1.0996 1.097 1.10219 2.29478e-14 321809 2020-04-17 ORF1a:C3147F,ORF1a:F190L,ORF1a:M3752I,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 807 C.8 3.58494 3.77312 1.0996 1.09163 1.10762 2.59214e-19 45878.6 2020-06-18 N:T205I,ORF14:L52F,ORF1a:S3158T,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF1b:P976L,ORF3a:Q57H,ORF8:A65V,S:D614G,S:L452R,S:S13I,S:W152C 808 B.1.1.67 3.39232 3.46012 1.09958 1.09117 1.10806 6.98962e-23 326.625 2020-06-17 N:D3L,N:G204R,N:L139F,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:G1125C,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4265I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 809 C.1 3.54348 3.70447 1.09954 1.09151 1.10763 2.96896e-18 110247 2020-05-12 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 810 C.27 2.06509 1.70239 1.09953 1.0858 1.11343 9.54002e-37 272.724 2020-05-11 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 811 C.7 1.72885 1.359 1.0994 1.08317 1.11587 3.2746e-23 6973.6 2020-05-25 N:T205I,ORF14:L52F,ORF1a:S3158T,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF1b:P976L,ORF3a:Q57H,ORF8:A65V,S:D614G,S:L452R,S:S13I,S:W152C 812 B.1.1.400 4.09497 4.67547 1.09904 1.09233 1.10579 2.23534e-19 33130.2 2020-04-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 813 B.1.378 1.45935 1.10869 1.09899 1.08034 1.11797 840.071 256119 2020-03-21 N:G204R,N:G214C,N:P13L,N:R203K,ORF14:G50N,ORF14:M60I,ORF14:V49L,ORF1a:F2387V,ORF1a:F3677L,ORF1a:G3278S,ORF1a:L3201P,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:D614G,S:F490S,S:G75V,S:L452Q,S:T76I,S:T859N 814 B.1.1.288 1.12583 0.825116 1.09893 1.07492 1.12347 6.93142e-20 95486.9 2020-07-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:C1833R,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 815 C.35 1.41326 1.06789 1.09884 1.07979 1.11824 2.08404e-10 8.81547e+06 2020-06-21 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 816 L.1 2.94585 2.79238 1.09847 1.08954 1.10748 2.07959e-24 85924 2020-03-30 N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 817 B.1.1.1 0.875957 0.628247 1.09806 1.06921 1.1277 1057.89 2.58032e+07 2020-03-02 E:S67P,N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:E3990A,ORF1a:L3711F,ORF1b:H1550Y,ORF1b:P314L,ORF8:T11P,S:A222V,S:D215H,S:D614G,S:L18F,S:V1228L 818 B.1.273 2.14931 1.79429 1.09804 1.08621 1.11001 3.90189e-15 41900.5 2020-03-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:Q998H,ORF1a:T224I,ORF1b:P314L,S:D614G 819 B.1.587 3.23279 3.21231 1.09778 1.09006 1.10556 8.4848e-17 37266.1 2020-09-05 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:T2936I,ORF1a:T3284I,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 820 D.3 10.3487 24.6733 1.09765 1.09526 1.10005 3.4563e-20 498.609 2020-06-25 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 821 B.1.1.258 3.81563 4.16798 1.09752 1.09111 1.10398 4.68306e-19 3665.68 2020-06-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 822 B.1.1.418 6.76126 11.165 1.09678 1.09337 1.1002 5.49836e-19 1052.52 2020-11-18 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 823 B.1.1.518 4.80526 6.11196 1.09652 1.09184 1.10123 9.98577e-17 5194.07 2020-10-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF3a:W45L,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118Y,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 824 B.1.1.423 4.19125 4.85787 1.09614 1.09095 1.10136 5.79607e-24 494.624 2020-05-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D138H,S:D614G,S:N501Y,S:P681H,S:S982A,S:S98F,S:T716I 825 B.1.601 5.56199 7.87497 1.09611 1.09221 1.10003 4.61986e-17 6719.61 2020-11-11 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T1822I,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:D155Y,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 826 B.1.1.414 8.25719 16.1274 1.09577 1.09322 1.09833 2.66643e-20 836.839 2020-07-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 827 B.1.1.355 6.10969 9.3018 1.0955 1.09214 1.09887 1.11797e-17 140898 2020-10-05 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF6:D61L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 828 B.1.1.379 2.13808 1.7819 1.09549 1.08593 1.10513 0 281.253 2020-05-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L3829F,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 829 B.1.382 2.91274 2.74604 1.09546 1.08846 1.10251 5.52804e-18 17441.5 2020-07-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF3a:I186V,S:D614G 830 B.1.1.119 2.03916 1.67458 1.09542 1.08547 1.10545 1.72578e-28 889.056 2020-04-20 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF7b:E39STOP,S:A222V,S:D614G,S:L18F 831 B.1.1.282 1.78301 1.41187 1.09514 1.08408 1.10632 4.71191e-17 508355 2020-04-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 832 B.1.1.512 5.42513 7.53826 1.09511 1.09147 1.09876 3.42345e-16 11012.3 2020-08-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 833 B.1.1.329 2.13212 1.77533 1.09501 1.08587 1.10422 3.1833e-16 49017 2020-08-03 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A2345V,ORF1a:I2230T,ORF1a:I648L,ORF1a:T1001I,ORF1a:T1874I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 834 B.1.586 1.9256 1.55547 1.09483 1.0849 1.10486 2.26504e-20 4628.56 2020-03-21 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:T2936I,ORF1a:T3284I,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 835 B.1.1.421 2.81283 2.60882 1.09453 1.08793 1.10117 3.824e-20 1842.9 2020-05-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 836 B.1.1.337 2.21301 1.86545 1.0945 1.08614 1.10291 7.81404e-15 74847.9 2020-10-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:W152R 837 B.1.1.123 1.397 1.05363 1.09444 1.08132 1.10773 2.07879e-36 283.452 2020-06-05 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F,S:Q14R 838 B.1.1.289 1.04077 0.756777 1.09425 1.07703 1.11175 2.65395e-36 283.501 2020-03-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:K322N,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 839 B.1.459 1.76077 1.39005 1.09421 1.08404 1.10447 5.23196e-13 2.0046e+06 2020-06-22 N:G204R,N:R203K,ORF14:G50N,ORF1a:T2106I,ORF1b:P314L,S:D614G 840 B.1.1.191 1.08367 0.791059 1.09413 1.0778 1.11071 8.57298e-09 15513.3 2020-08-17 E:L21F,M:I82T,N:A12G,N:T205I,ORF14:L52F,ORF1a:F3677L,ORF1a:G3676S,ORF1a:T2007I,ORF1b:P314F,ORF9b:H9D,S:A67V,S:D614G,S:E484K,S:F888L,S:Q52R,S:Q677H 841 B.1.1.388 4.25034 4.97173 1.09368 1.0897 1.09768 3.7402e-13 439354 2020-04-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 842 B.1.1.202 2.68225 2.43535 1.09368 1.08738 1.10002 8.82485e-24 307.585 2020-05-15 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:A653V,S:D614G 843 B.1.1.429 3.30525 3.3236 1.09349 1.08849 1.09851 5.41225e-13 455914 2020-09-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L2105P,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I,S:Y144V 844 B.1.1.236 3.64032 3.86593 1.09334 1.08888 1.09782 3.45658e-29 286.328 2020-10-05 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1b:P314L,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 845 B.1.218 0.709273 0.502802 1.09188 1.07317 1.11092 159.387 169383 2020-08-12 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:N679K,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 846 B.1.362 0.772309 0.549759 1.09121 1.0757 1.10694 8.64791e-13 658027 2020-07-20 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF1b:S2563A,S:D614G 847 AJ.1 1.66708 1.29978 1.09095 1.08404 1.09791 3.55892e-15 12210.8 2020-11-22 ORF1a:A2994V,ORF1a:G661S,ORF1a:V378I 848 B.1.1.240 2.59678 2.32538 1.09076 1.08646 1.09507 5.95906e-19 49568.1 2020-09-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 849 AH.3 1.19038 0.877988 1.09066 1.08147 1.09993 4.01329e-15 41931.6 2020-11-14 ORF1a:V378I 850 B.1.362.2 1.97445 1.60618 1.09052 1.08511 1.09595 1.54854e-17 22361.3 2020-09-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF1b:S2563A,S:D614G 851 B.1.1.134 0.593069 0.417597 1.09045 1.07277 1.10842 9.40448e-09 642.311 2020-04-10 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:H374Y,ORF1b:P314L,S:A222V,S:D614G 852 B.1.1.226 1.10927 0.811701 1.09039 1.08101 1.09985 3.25443e-21 3469.29 2020-06-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1b:P314L,ORF8:R52I,ORF8:Y73C,S:D614G 853 B.1.165 0.687073 0.486393 1.09024 1.07555 1.10513 0 292.908 2020-05-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:T3255I,ORF1b:P314L,ORF3a:G174C,ORF8:I10V,S:D614G,S:T732A 854 B.1.1.194 0.585411 0.412038 1.09023 1.07305 1.10769 2.98612e-18 24278.2 2020-03-31 N:G204R,N:R203K,ORF14:G50S,ORF1b:P314L,S:D614G 855 B.1.170 0.68173 0.482454 1.09004 1.07582 1.10445 2.9017e-11 282593 2020-06-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3618V,ORF1a:P959S,ORF1a:T3255I,ORF1a:T4175I,ORF1b:P314L,S:D614G,S:P681H,S:T478K,S:T732A 856 B.1.1.435 2.63521 2.37448 1.08971 1.08626 1.09317 5.56796e-15 1.19352e+06 2020-12-03 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T2124I,ORF1a:Y496C,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69S,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 857 B.1.1.304 0.649513 0.458776 1.0896 1.076 1.10336 1.35256e-17 63165.8 2020-05-29 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 858 B.1.1.296 0.489705 0.343087 1.0894 1.07216 1.10693 0 294.543 2020-03-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:P4223L,ORF1a:R2336K,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S94F,S:S982A,S:T716I 859 AK.1 1.76518 1.39437 1.0894 1.08459 1.09423 4.57076e-30 295.21 2020-09-20 ORF1a:V378I 860 B.1.1.161 0.902835 0.648881 1.089 1.08049 1.09757 42.2831 122654 2020-04-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:A262S,S:D614G 861 B.1.1.130 0.869826 0.623557 1.08822 1.08113 1.09536 4.52958e-32 297.956 2020-08-10 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:P3952S,ORF1b:P314L,ORF3a:S166L,S:A222V,S:D614G 862 B.1.1.153 0.302274 0.210357 1.08819 1.06814 1.10861 5.69623e-11 7.50041e+06 2020-10-05 N:A220V,N:P365S,ORF10:V30L,ORF14:L67F,ORF1a:T2274I,ORF1b:P314L,S:A222V,S:D614G,S:G639S 863 B.1.544 0.562926 0.395754 1.08792 1.07802 1.09791 5.07622e-15 12958.7 2020-10-02 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:D222Y,S:D614G,S:M153T 864 B.1.1.311 0.676072 0.478286 1.0877 1.08009 1.09536 3.21484e-16 553295 2020-08-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 865 B.1.84 1.14484 0.840599 1.08733 1.08347 1.0912 3.6392e-13 200314 2020-04-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF9b:R32L,S:D614G 866 B.1.1.30 0.670041 0.473848 1.08729 1.08081 1.09381 4.91951e-20 43926.1 2020-05-18 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 867 B.1.146 0.347501 0.242154 1.08721 1.07518 1.09938 8.06456e-09 226481 2020-07-05 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:P971L,ORF1a:T1001I,ORF1b:P314L,ORF1b:P976L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 868 B.1.1.149 0.288958 0.201019 1.08705 1.07371 1.10056 0 300.335 2020-05-19 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A903V,ORF1b:P314L,S:A222V,S:D614G 869 B.1.1.467 0.640907 0.452473 1.08681 1.08151 1.09213 1.86573e-14 1788.92 2020-10-21 N:A156S,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 870 B.1.6 0.236472 0.1643 1.08677 1.07275 1.10098 3.46652e-16 83757 2020-03-21 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 871 B.1.1.387 0.899069 0.645982 1.08643 1.08346 1.08941 2.33769e-06 43934.3 2020-08-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 872 B.1.328 0.281732 0.195956 1.08619 1.0784 1.09405 8.38079e-22 784.617 2020-05-25 N:G204R,N:R203K,ORF14:G50N,ORF1b:D729Y,ORF1b:P1570L,ORF1b:P314L,S:A626S,S:D614G 873 B.1.1.521 0.108365 0.0751406 1.08579 1.07284 1.0989 49.5472 212781 2020-08-18 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:N1662S,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 874 B.1.548 0.126674 0.0878532 1.08568 1.07632 1.09512 9.01416e-16 44592.2 2020-05-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:P1158S,ORF1b:P314L,S:D614G 875 B.1.1.100 0.0760388 0.0527113 1.08538 1.07754 1.09326 1.01511e-20 785.315 2020-09-21 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:D155Y,S:A222V,S:D614G,S:D936Y,S:L18F,S:T51I 876 B.19 0.00446608 0.00309515 1.08509 1.07576 1.09451 8.03187e-22 584.014 2020-04-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:D1848Y,ORF1b:P314L,ORF8:E110STOP,ORF8:W45S,S:D614G,S:I1210T 877 B.51 0.0018154 0.00125814 1.08508 1.07368 1.0966 2.27875e-23 307.84 2020-03-19 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:W45L,S:D614G 878 B.13 -0.0104078 -0.00721301 1.08502 1.07474 1.09539 1.25242e-30 305.44 2020-04-06 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V2120L,S:D614G 879 B.46 -0.0251795 -0.0174507 1.08496 1.07606 1.09392 1.52659e-27 818.195 2020-04-12 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF1b:S1893F,ORF3a:Q57H,S:D614G 880 B.20 -0.0253185 -0.0175471 1.08495 1.07595 1.09403 7.24746e-28 726.338 2020-04-04 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:A688V,S:D614G 881 B.50 -0.0584804 -0.0405352 1.08494 1.08064 1.08926 7.46533e-18 9727.45 2020-03-14 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF1b:Q2403L,ORF3a:Q57H,S:D614G 882 B.1.14 -0.0306576 -0.0212476 1.08492 1.07518 1.09474 2.71503e-19 1967.29 2020-04-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1184D,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 883 B.18 -0.0301931 -0.0209257 1.08485 1.07081 1.09908 1.87438e-27 307.491 2020-03-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:S2285F,ORF1b:P314L,ORF3a:L95F,S:D614G 884 B.47 -0.0242122 -0.0167803 1.08483 1.06591 1.1041 1.79058e-29 312.098 2020-03-11 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:P681L 885 B.56 -0.0696558 -0.0482845 1.08476 1.07598 1.09361 0.00128495 184450 2020-03-19 N:G215V,N:T165I,N:T247I,ORF14:Q12STOP,ORF14:V62L,ORF1a:D1639N,ORF1a:R2115I,ORF1a:S3884L,ORF1a:T265I,ORF1b:A2222V,ORF1b:N2593S,ORF1b:P1000L,ORF1b:P1223S,ORF1b:P314L,ORF3a:Q57H,ORF3a:T32I,S:A262S,S:D614G,S:D796Y,S:H49Y,S:L452R,S:N501Y,S:N978S,S:P681R,S:Q613H 886 B.5 -0.0535034 -0.0370845 1.0847 1.07112 1.09845 1.50036e-20 1862.06 2020-02-15 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF1b:Q2403L,ORF3a:Q57H,S:D614G 887 B.57 -0.0434605 -0.0301222 1.08468 1.06725 1.1024 5.81485e-20 388.4 2020-03-17 N:M234I,ORF1a:H3580Q,ORF1a:P4197S,ORF1a:S4398L,ORF1a:T2196P,ORF1a:T265I,ORF1a:T2952I,ORF1a:T3202M,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:E1111K,S:N501Y,S:P681H,S:S494P 888 B.15 -0.039157 -0.027139 1.08468 1.06529 1.10442 8.85177e-22 487.339 2020-03-19 N:G204R,N:R203K,ORF14:G50N,ORF1b:A37S,ORF1b:P314L,S:D614G 889 B.26 -0.0496099 -0.0343852 1.08468 1.06917 1.1004 3.19406e-25 420.22 2020-03-23 M:L124F,M:L90F,N:G204R,N:R203K,ORF14:G50N,ORF1b:D884Y,ORF1b:P314L,S:D614G 890 B.53 -0.0650362 -0.0450809 1.08466 1.07249 1.09698 3.97272e-08 124450 2020-02-21 N:A134V,N:R195I,ORF14:E42STOP,ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 891 B.1.1.242 -0.240577 -0.167168 1.08458 1.08061 1.08857 3.42091e-18 25382.7 2020-07-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 892 B.27 -0.0551713 -0.0382409 1.08447 1.06324 1.10611 2.86387e-19 22460.8 2020-03-04 N:G204R,N:R203K,N:T379I,ORF14:G50N,ORF1b:P314L,S:D614G 893 B.1.1.517 -0.17429 -0.120956 1.08418 1.07426 1.0942 7.66489e-15 45070.7 2020-12-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T2615I,ORF1b:D1083E,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S221L,S:S982A,S:T716I 894 B.10 -0.0650931 -0.0451204 1.08416 1.05715 1.11186 6.03221e-14 21483.3 2020-03-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:E583D 895 AE.6 -0.682512 -0.48303 1.08401 1.08095 1.08707 4.33731e-17 297939 2020-10-13 896 B.52 -0.094774 -0.0657085 1.084 1.06215 1.10631 9.41876e-19 13343.3 2020-03-22 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:Q675R 897 B.1.1.349 -0.282207 -0.196288 1.08376 1.07467 1.09292 3.05575e-06 1.06418e+06 2020-10-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:N460Y,ORF1a:T1001I,ORF1b:P314L,ORF1b:S220G,ORF8:F120L,ORF8:I121L,ORF8:K68STOP,ORF8:L118V,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 898 B.1.1.57 -0.384475 -0.268248 1.08369 1.07666 1.09076 1.93571e-20 13428.7 2020-05-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D138H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 899 B.1.1.243 -0.25148 -0.174786 1.08367 1.07285 1.09461 1.03205e-08 576242 2020-09-11 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 900 B.23 -0.0838641 -0.0581392 1.08363 1.05039 1.11791 4.79242e-22 3665.65 2020-03-04 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF8:L95F,S:A688V,S:D614G 901 B.1.1.25 -0.177637 -0.123285 1.08362 1.06778 1.0997 6.46819e-14 1.30888e+07 2020-04-09 M:V70L,N:D3L,N:G204R,N:P279Q,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:A975V,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 902 B.1.1.451 -0.766282 -0.545244 1.08359 1.07982 1.08738 1.13183e-16 32645.8 2020-10-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF1b:R2049K,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 903 AH.1 -0.801294 -0.571541 1.08357 1.07992 1.08724 2.8356e-18 2055.43 2021-01-05 N:S193I,ORF14:V40F,ORF1a:A876T,ORF1a:G392D 904 B.1.1.328 -0.25485 -0.177142 1.08355 1.07196 1.09527 0.00232661 259295 2021-01-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A2345V,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 905 B.1.1.170 -0.164285 -0.113995 1.08355 1.06558 1.10182 4.30234e-15 1.13585e+07 2020-07-27 N:A220V,N:D415H,ORF10:V30L,ORF14:L67F,ORF1a:A2139V,ORF1a:A3623S,ORF1a:E57K,ORF1a:K1247N,ORF1a:T1637I,ORF1b:K82N,ORF1b:P314L,ORF1b:Q2635H,S:A222V,S:D614G,S:G769V 906 B.1.1.432 -0.225608 -0.156717 1.08351 1.07 1.09718 6.07745e-14 1.06966e+06 2020-06-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69Y,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 907 B.1.1.408 -0.326858 -0.227625 1.08349 1.07409 1.09298 1.61581e-34 309.128 2020-07-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 908 B.1.1.297 -0.241447 -0.167775 1.08349 1.07073 1.0964 4.38278e-14 5.18956e+06 2020-08-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 909 B.1.1.39 -0.175046 -0.121482 1.08344 1.06535 1.10184 5.6643e-14 5.51157e+06 2020-07-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 910 N.4 -0.367104 -0.255977 1.0834 1.0745 1.09236 1.05457e-11 1.18043e+07 2020-04-28 N:P80R,N:S412N,N:T205I,ORF14:L52F,ORF1a:A3209V,ORF1a:K1795Q,ORF1a:L122F,ORF1a:Q1592R,ORF1a:R1566S,ORF1a:T265I,ORF1a:T333A,ORF1b:P314L,ORF3a:Q57H,ORF7b:L14S,ORF9b:Q77E,S:A222V,S:C136F,S:D614G,S:E484Q,S:H655Y,S:L452R,S:P9L,S:T478R 911 B.1.1.306 -0.307754 -0.214204 1.08335 1.07244 1.09436 1.43363e-09 1.54583e+06 2020-04-05 N:D3L,N:G204P,N:R203E,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 912 B.1.1.404 -0.33721 -0.234908 1.08334 1.07337 1.09342 0.253399 225237 2020-09-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T12I,ORF7a:S37F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 913 B.1.1.163 -0.278049 -0.193376 1.08333 1.07114 1.09566 2.83229 1.57183e+06 2020-06-02 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3143V,ORF1b:L1681F,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:S939F 914 B.1.1.312 -0.443861 -0.31037 1.0833 1.07551 1.09114 1.2856e-08 1.02354e+06 2020-08-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 915 B.1.1.204 -0.272039 -0.189167 1.08329 1.07057 1.09617 2.53521e-15 348419 2020-09-09 N:G204R,N:R203K,ORF10:V32L,ORF14:G50N,ORF1a:A4257V,ORF1a:M3669I,ORF1a:S911F,ORF1a:T2166I,ORF1a:T3750I,ORF1b:P314L,S:D614G 916 B.1.1.461 -0.805081 -0.574397 1.08325 1.07884 1.08768 4.67635e-19 2847.38 2020-10-18 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 917 B.1.1.401 -1.00296 -0.726852 1.08325 1.07969 1.08681 1.4791e-21 612.531 2020-06-03 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 918 B.1.1.415 -1.06 -0.772098 1.08324 1.07987 1.08663 2.41358e-16 72328.1 2020-12-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 919 B.1.1.193 -1.07179 -0.781526 1.08323 1.07986 1.0866 1.9018e-29 310.135 2020-10-03 N:R203K,ORF14:G50R,ORF1b:P314L,S:D614G 920 B.1.1.255 -0.382194 -0.266635 1.08319 1.07362 1.09285 5.27742e-23 520.699 2020-06-13 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M1586I,ORF1a:T1001I,ORF1b:D2499N,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D178H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 921 B.1.1.189 -0.176084 -0.122205 1.08318 1.06234 1.10443 5.40087 1.05205e+06 2020-04-30 E:L21F,M:I82T,N:A12G,N:T205I,ORF14:L52F,ORF1a:T2007I,ORF1b:P314F,ORF9b:H9D,S:D614G,S:E484K,S:F888L,S:Q52R,S:Q677H 922 B.1.1.506 -0.696471 -0.493332 1.08317 1.07785 1.08852 2.69497e-07 200729 2020-05-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 923 AH.2 -0.972239 -0.702736 1.08317 1.07935 1.087 9.56527e-18 33485.2 2020-08-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L 924 B.1.1.427 -0.963438 -0.695859 1.08315 1.07927 1.08706 1.73893e-07 131223 2020-07-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 925 B.1.1.84 -0.810651 -0.578601 1.08315 1.07851 1.0878 2.02992e-24 2523.88 2020-06-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A2320V,ORF1a:F3677L,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:R24C,ORF1a:T1001I,ORF1a:T1567A,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681R,S:S982A,S:T716I 926 AE.4 -0.84448 -0.604233 1.0831 1.07854 1.08768 1.18532e-17 112914 2020-10-13 M:L29F,N:P13L,ORF1a:T2016K,ORF1a:T4355I,ORF1b:A88V,ORF9b:P10S 927 B.1.1.74 -0.682308 -0.482879 1.08309 1.07744 1.08878 4.61103e-19 12559.4 2020-07-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:S1587L,ORF1a:T1001I,ORF1b:P314L,ORF3a:A23V,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 928 AE.2 -1.68344 -1.31536 1.08309 1.08078 1.0854 3.34289e-18 161970 2020-09-10 N:P13L,ORF1a:T2016K,ORF1b:A88V,ORF9b:P10S 929 B.1.1.442 -1.22679 -0.908218 1.08308 1.07991 1.08626 4.57238e-10 1.7103e+06 2020-06-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E1223A,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 930 B.1.1.377 -0.917828 -0.660444 1.08307 1.07882 1.08734 3.20104e-18 19513.6 2020-10-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 931 AG.1 -1.03929 -0.755598 1.08307 1.0793 1.08685 1.6585e-18 20075 2020-09-12 ORF1a:A876T,ORF1a:G392D 932 B.1.1.274 -0.337463 -0.235086 1.08306 1.07147 1.09478 2.99359e-07 963810 2020-04-17 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF3a:P240S,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 933 B.1.1.51 -0.319581 -0.222511 1.08306 1.07079 1.09546 3.6009e-23 7143.55 2020-06-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 934 AQ.1 -1.64092 -1.27504 1.08305 1.08064 1.08546 1.96906e-19 1091.12 2020-11-17 ORF3a:L53F,ORF3a:Q116H,ORF3a:Q185H,ORF8:L84S 935 AE.7 -1.3631 -1.0241 1.08305 1.08014 1.08596 4.11016e-18 109998 2020-10-13 N:P344S,S:Y28H 936 N.6 -0.548391 -0.385256 1.08304 1.07582 1.09031 5.87268e-11 1.25882e+06 2020-05-11 N:D377Y,N:M234I,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 937 B.1.1.456 -0.839153 -0.600185 1.083 1.07819 1.08784 1.90062e-18 9737.79 2020-10-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:D629N,ORF1a:F3677L,ORF1a:G3676S,ORF1a:H1108Y,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 938 B.1.1.395 -0.314768 -0.219129 1.08298 1.07003 1.09608 0 310.341 2020-04-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 939 B.1.1.53 -0.415888 -0.290494 1.08298 1.07316 1.09288 9.43523e-18 53639.9 2020-06-17 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1a:T1543I,ORF1a:V337I,ORF1b:P314L,ORF7a:T61I,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 940 B.1.1.412 -0.622795 -0.439237 1.08297 1.0764 1.08959 2.28576e-18 52180.2 2020-07-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF1b:T1540I,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 941 B.1.1.382 -1.61047 -1.24651 1.08295 1.08038 1.08553 2.94612e-21 1160.61 2020-04-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 942 B.1.1.381 -0.892448 -0.640893 1.08295 1.0783 1.08762 3.32222e-14 1.87564e+06 2020-08-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 943 B.1.1.120 -0.350627 -0.244357 1.08295 1.07114 1.09488 4.93104e-36 310.579 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 944 B.1.1.46 -0.474302 -0.332074 1.08294 1.0742 1.09176 3.44662e-12 251281 2020-05-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 945 B.1.1.407 -1.38803 -1.04579 1.08294 1.07994 1.08595 8.50733e-16 453458 2020-09-06 N:D3L,N:G204R,N:H300Y,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 946 B.1.1.398 -0.413024 -0.288463 1.08294 1.07288 1.09309 0.132171 1.63725e+06 2020-05-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 947 B.1.1.424 -0.969899 -0.700906 1.08293 1.07862 1.08726 8.42006 653604 2020-06-22 N:D3L,N:G204R,N:N8D,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D138H,S:D614G,S:N501Y,S:P681H,S:S982A,S:S98F,S:T716I 948 B.1.1.307 -0.613273 -0.432294 1.08293 1.0761 1.08979 3.16866e-13 455343 2020-08-11 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:L106F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:S98F,S:T716I 949 K.2 -1.07675 -0.785508 1.08292 1.07901 1.08684 4.12385e-16 73452.1 2020-08-07 N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:P26S,S:S13I,S:W152C 950 B.1.1.347 -0.774293 -0.551246 1.08292 1.07749 1.08838 2.18555e-16 68692.9 2020-08-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:N460Y,ORF1a:T1001I,ORF1b:P314L,ORF8:I121L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 951 N.3 -0.726238 -0.515385 1.08291 1.0771 1.08875 7.19831e-11 2.94062e+06 2020-05-07 M:I48V,N:T205I,ORF14:L52F,ORF1a:T1828A,ORF1a:T265I,ORF1b:E1264D,ORF1b:P314L,ORF3a:Q57H,ORF3a:T151I,S:D614G 952 B.1.1.50 -0.353154 -0.246138 1.08291 1.07099 1.09496 6407.22 1.74108e+06 2020-06-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF14:V49L,ORF1a:A1708D,ORF1a:A2345V,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 953 B.1.1.273 -1.54233 -1.18358 1.0829 1.08016 1.08566 8.51138e-21 36396.8 2020-07-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 954 B.1.1.241 -0.434843 -0.303955 1.0829 1.07316 1.09273 5.37022e-06 1.28137e+06 2020-08-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 955 B.1.1.507 -0.521912 -0.366188 1.08289 1.07476 1.09109 4.07845e-17 91101.6 2020-09-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 956 B.1.1.431 -0.551051 -0.387176 1.08288 1.07514 1.09069 6.47058e-26 894.034 2020-08-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 957 B.1.1.362 -0.694404 -0.491804 1.08287 1.0767 1.08908 5.30648e-15 156593 2020-07-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 958 B.1.1.359 -0.508951 -0.35688 1.08287 1.07444 1.09136 0.0159576 107799 2020-07-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4087I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 959 N.2 -1.03308 -0.750667 1.08287 1.0787 1.08705 2.67656e-17 62163.5 2020-07-07 N:R195K,N:T205I,ORF14:E42K,ORF14:L52F,ORF1a:T265I,ORF1b:E1264D,ORF1b:P314L,ORF3a:G172V,ORF3a:Q57H,S:D614G,S:T73I 960 B.1.1.320 -1.629 -1.26384 1.08285 1.08019 1.08552 3.83279e-18 1861.73 2020-09-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69Y,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 961 B.1.1.251 -0.565555 -0.397655 1.08285 1.0752 1.09056 4.5706e-17 89459.6 2020-08-28 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4031I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 962 B.1.1.129 -1.06558 -0.776559 1.08285 1.07878 1.08694 4.95829e-08 10575.1 2020-04-15 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:M1586I,ORF1b:P314L,S:A222V,S:D614G,S:P1162R 963 AE.1 -0.982906 -0.711089 1.08285 1.07844 1.08728 1.39e-16 491130 2020-06-15 N:P13L,ORF1a:T2016K,ORF1b:A88V,ORF8:L95F,ORF9b:P10S 964 K.1 -1.40955 -1.06463 1.08285 1.07976 1.08594 5.03353e-18 25783.5 2020-07-24 N:T205I,ORF14:L52F,ORF1a:A1473V,ORF1a:C3790F,ORF1a:F3789L,ORF1a:I4205V,ORF1a:T265I,ORF1a:V3595G,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 965 B.1.1.386 -1.50147 -1.14647 1.08285 1.07995 1.08575 9.74135e-22 2355.29 2020-06-17 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4087I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 966 B.1.1.500 -1.48218 -1.12911 1.08284 1.07991 1.08579 0.117585 4967.02 2020-08-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF14:V49L,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1a:Y2003N,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 967 N.7 -1.68517 -1.31701 1.08284 1.08025 1.08543 5.27051e-10 59525.8 2020-06-18 N:D377Y,N:T205I,ORF14:L52F,ORF1a:S2193F,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 968 B.1.1.72 -0.959394 -0.692704 1.08283 1.07827 1.08741 8.98687e-20 3693.14 2020-08-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 969 B.1.1.37 -0.496806 -0.348172 1.08283 1.07404 1.0917 2.17675e-14 524516 2020-06-02 N:D3L,N:G204R,N:R203K,N:S194L,N:S235F,ORF14:G50N,ORF14:Q41STOP,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V1176F 970 B.1.1.196 -0.970518 -0.70139 1.08283 1.07831 1.08736 4.62988e-22 467.034 2020-09-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 971 B.1.1.352 -1.29287 -0.963845 1.08282 1.07942 1.08623 2.04475e-19 931.752 2020-10-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 972 B.1.1.383 -1.0205 -0.740699 1.08282 1.0785 1.08715 1.67133e-23 1165.16 2020-05-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:D83G,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 973 B.1.1.177 -0.832576 -0.595193 1.08282 1.07753 1.08813 6.13379e-20 787.465 2020-06-15 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:E37K,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 974 B.1.1.198 -0.459146 -0.321258 1.08282 1.07324 1.09248 2.57259e-16 154082 2020-04-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:T4161N,ORF1b:P314L,ORF1b:Q2425H,ORF8:I10T,S:D614G 975 AN.1 -0.879544 -0.630993 1.08281 1.0778 1.08785 1.2453e-16 86759.4 2020-09-16 ORF1a:E972K,ORF8:L84S 976 B.1.1.127 -1.53266 -1.17476 1.08281 1.07992 1.0857 1.43329e-18 1708.93 2020-04-23 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:K2208N,ORF1a:P4220S,ORF1a:Y534C,ORF1b:A1521V,ORF1b:P314L,S:A222V,S:D614G 977 B.1.1.110 -1.57111 -1.21 1.0828 1.07999 1.08563 1.75627e-14 46070.8 2020-04-18 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF8:A65V,S:A222V,S:D614G,S:L18F 978 B.1.1.516 -1.07989 -0.788024 1.0828 1.0787 1.08692 1.4958e-16 82069.1 2020-06-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF7b:S31L,ORF8:D35Y,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 979 B.1.1.58 -0.473979 -0.331843 1.08279 1.07343 1.09224 2.88837e-14 250673 2020-07-20 N:D3L,N:G204R,N:L331F,N:Q281K,N:R203K,N:S235F,N:T135I,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF1b:T730I,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D138H,S:D614G,S:F490S,S:N501Y,S:P681H,S:S982A,S:T716I 980 N.8 -0.65069 -0.45964 1.08279 1.07594 1.08968 2.43733e-15 37736.7 2020-07-01 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 981 B.1.1.310 -1.21461 -0.89807 1.08279 1.07911 1.08647 3.01386e-22 3685.9 2020-08-25 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 982 B.1.1.205 -1.07477 -0.783915 1.08279 1.07863 1.08696 1.27825e-19 4731.41 2020-05-28 N:G204R,N:R203K,ORF10:V32L,ORF14:G50N,ORF1a:M3669I,ORF1a:S911F,ORF1a:T3750I,ORF1b:P314L,S:D614G 983 B.1.1.448 -0.781531 -0.556676 1.08278 1.07706 1.08853 8.9543e-18 203077 2020-05-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1a:V1291F,ORF1b:D2576G,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 984 B.1.1.144 -0.842569 -0.60278 1.08278 1.07747 1.08812 3.39597e-17 6191.26 2020-09-07 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A1082T,ORF1b:P314L,S:A222V,S:D614G 985 B.55 -0.123761 -0.0858304 1.08278 1.04713 1.11964 2.79376e-16 193155 2020-03-01 ORF1a:I1667V,ORF1a:P892S,ORF1a:Q575H,ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF1b:S997L,ORF3a:Q57H,S:D614G 986 B.1.1.122 -0.57513 -0.404586 1.08278 1.075 1.09061 2.3269e-17 13825.8 2020-05-24 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF1b:V658I,S:A222V,S:D614G,S:H69Y,S:L18F 987 B.1.1.138 -0.604661 -0.426023 1.08277 1.07536 1.09024 4.71879e-21 329.766 2020-07-03 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:F43V,S:A222V,S:D614G 988 B.1.1.239 -1.46657 -1.11514 1.08277 1.0797 1.08585 2.60089e-20 879.549 2020-07-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 989 B.1.1.342 -0.977371 -0.706752 1.08277 1.07816 1.08739 1.95113e-23 509.47 2020-06-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E995D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF1b:T1555I,ORF1b:Y1678H,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 990 B.1.1.399 -0.999172 -0.723868 1.08276 1.07825 1.08729 2.22368e-20 6428.81 2020-05-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 991 B.1.1.40 -0.89746 -0.644745 1.08276 1.07774 1.08781 1.8067e-21 3735.35 2020-04-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:A1432V,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 992 B.1.1.403 -1.19938 -0.885431 1.08276 1.079 1.08654 4.17792e-19 793.385 2020-09-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF10:P10S,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 993 B.1.1.139 -1.49335 -1.13916 1.08276 1.07974 1.08579 2.48346e-20 949.635 2020-07-18 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:V2027L,ORF1b:P314L,S:A222V,S:D614G 994 B.1.1.463 -1.03928 -0.755588 1.08276 1.07842 1.08712 2.92023e-24 472.141 2020-06-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:G188C,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 995 B.1.1.157 -0.852445 -0.610295 1.08276 1.07746 1.08808 8.36402e-18 323997 2020-06-29 N:A220V,N:P13T,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF9b:H9Q,S:A222V,S:D614G 996 B.1.1.402 -0.761941 -0.541997 1.08276 1.07683 1.08872 1.6232e-21 2154.56 2020-05-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 997 B.1.1.54 -0.669166 -0.473205 1.08275 1.076 1.08955 6.63581e-15 4.03388e+06 2020-06-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:H110Y,ORF1a:I2230T,ORF1a:I3737V,ORF1a:L730F,ORF1a:T1001I,ORF1b:L1681F,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T572I,S:T716I 998 B.1.1.34 -0.571443 -0.401916 1.08275 1.07485 1.09072 3.85259e-20 25619.9 2020-04-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF3a:L85F,ORF3a:W131C,ORF7a:Q94L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:W152R 999 B.1.1.244 -0.644068 -0.454787 1.08275 1.07572 1.08983 3.24731e-17 30812.6 2020-06-10 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1000 B.1.1.364 -1.21311 -0.896821 1.08275 1.07901 1.0865 1.18896e-07 3957.21 2020-06-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E913D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1001 B.1.1.350 -0.725339 -0.514717 1.08275 1.0765 1.08903 9.47117e-10 39019 2020-04-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:N460Y,ORF1a:T1001I,ORF1b:P314L,ORF8:F120L,ORF8:I121L,ORF8:K68STOP,ORF8:L118V,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1002 B.1.1.209 -0.821962 -0.587151 1.08275 1.07722 1.0883 3.49079e-17 294198 2020-06-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1003 B.1.1.133 -0.596939 -0.420408 1.08274 1.07514 1.0904 0.0968156 4934.6 2020-05-16 N:A220V,N:P383S,ORF10:V30L,ORF14:L67F,ORF1a:D1933A,ORF1a:M3221I,ORF1b:P314L,ORF3a:G100C,ORF3a:L41F,S:A222V,S:D614G,S:Q613H 1004 B.1.1.201 -1.08465 -0.791852 1.08274 1.07855 1.08695 6.43075e-18 97774.1 2020-06-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:T2166I,ORF1a:Y4080H,ORF1b:P314L,S:D614G 1005 B.1.1.169 -1.03875 -0.755165 1.08274 1.07836 1.08714 4.92855e-20 11455.3 2020-05-11 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:T2007I,ORF1b:P314L,S:A222V,S:D614G 1006 B.1.1.180 -0.880623 -0.63182 1.08274 1.07757 1.08793 6.48022e-20 1782.07 2020-06-19 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:E37K,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 1007 AE.3 -1.73562 -1.36556 1.08274 1.08011 1.08537 1.26964e-17 265844 2020-07-06 N:P13L,ORF1a:T2016K,ORF1b:A88V,ORF9b:P10S 1008 B.1.1.175 -0.955125 -0.689377 1.08274 1.07796 1.08753 4.68904e-17 45869.4 2020-04-29 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:E37K,ORF1a:P804S,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 1009 B.1.1.121 -0.846225 -0.60556 1.08273 1.07732 1.08816 3.19033e-17 4767.83 2020-06-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:M2796I,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1010 AE.8 -0.531711 -0.373236 1.08272 1.07412 1.0914 9.56562e-17 251280 2020-08-13 1011 B.1.1.515 -0.860374 -0.616338 1.08272 1.07739 1.08808 6.21937e-17 280942 2020-03-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1012 B.1.1.430 -1.03725 -0.753974 1.08272 1.07829 1.08717 6.29241e-10 111336 2020-06-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 1013 B.1.1.290 -0.616626 -0.434738 1.08272 1.07527 1.09021 1.14026e-24 672.184 2020-05-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:L18F,S:N501Y,S:P681H,S:S982A,S:T716I 1014 B.1.1.325 -0.530807 -0.372585 1.08272 1.07407 1.09143 8.99477e-16 35297.4 2020-08-06 N:D3L,N:G200C,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF14:Q46H,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4031I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1015 B.1.1.356 -0.818237 -0.584333 1.08272 1.0771 1.08836 6.91288e-20 1575.54 2020-06-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1016 B.1.1.91 -1.04816 -0.762657 1.08271 1.07832 1.08712 2.05663e-19 30708.8 2020-04-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P1001S,ORF1b:P314L,ORF3a:P42H,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1017 B.1.1.440 -0.84912 -0.607763 1.08271 1.07729 1.08816 1.19842e-19 1093.51 2020-06-24 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1018 B.1.1.391 -0.547447 -0.384575 1.08271 1.0743 1.09118 0.00326037 7007.31 2020-05-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:Q72H,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1019 B.1.1.145 -0.411625 -0.287471 1.08271 1.07152 1.09401 1.00249e-35 311.179 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A903V,ORF1b:P314L,S:A222V,S:D614G 1020 B.1.1.15 -0.423029 -0.295562 1.0827 1.07178 1.09373 5.81749e-35 311.295 2020-06-29 N:A220V,N:S33I,ORF10:V30L,ORF14:L67F,ORF1a:A903V,ORF1b:I2378L,ORF1b:P314L,ORF9b:V30L,S:A222V,S:D614G 1021 B.1.232 -0.307293 -0.21388 1.0827 1.06769 1.09792 3.87818e-14 80882.5 2020-08-24 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1022 B.1.1.481 -1.67739 -1.30959 1.0827 1.07993 1.08547 4.51704e-07 54700.8 2020-08-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,ORF9b:T72I,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1023 B.1.1.181 -0.473828 -0.331735 1.08269 1.07292 1.09256 5.68195e-18 8144.53 2020-04-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A2345V,ORF1a:A3623S,ORF1a:E37K,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 1024 B.1.1.308 -0.774023 -0.551043 1.08269 1.0767 1.08872 1.92814e-23 322.632 2020-09-15 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1a:W2769C,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1025 B.1.1.185 -1.05907 -0.771353 1.08269 1.07831 1.0871 1.54896e-18 1346.98 2020-04-02 E:F20L,E:T30I,M:H125Y,N:T325I,ORF10:A8V,ORF1a:N1324S,ORF1a:S2261Y,ORF1a:T1638I,ORF1a:T265I,ORF1a:Y3160H,ORF1b:K2674R,ORF1b:L1681F,ORF1b:P314L,ORF1b:Q813R,ORF1b:T2537I,ORF3a:Q57H,ORF7a:STOP122R,ORF7b:M1K,ORF9b:I5T,S:D215G,S:D614G,S:G669S,S:H655Y,S:H66D,S:N1187D,S:Q949R,S:V483A 1026 B.1.1.112 -0.866393 -0.620933 1.08269 1.07732 1.08808 1.20302e-19 78316.8 2020-06-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1027 B.1.1.482 -0.730153 -0.518295 1.08269 1.07632 1.08909 1.25721e-20 620.45 2020-06-24 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1028 B.1.1.172 -0.578939 -0.407345 1.08269 1.07466 1.09078 1.12516e-22 2316.98 2020-04-15 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 1029 B.1.1.132 -0.681281 -0.482123 1.08269 1.07586 1.08956 3.08908e-22 1203.17 2020-04-29 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:P3952S,ORF1b:P314L,ORF3a:L85F,ORF3a:S166L,S:A222V,S:D614G 1030 B.1.1.116 -0.974352 -0.704389 1.08269 1.07791 1.08749 1.3239e-20 848.7 2020-06-24 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:G2510C,ORF1b:P314L,ORF3a:V77F,S:A222V,S:D614G,S:L18F 1031 B.1.1.49 -0.416118 -0.290658 1.08269 1.07152 1.09397 0 311.138 2020-03-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF14:V49L,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1032 B.1.1.309 -0.646994 -0.456931 1.08268 1.07549 1.08993 7.33138e-24 321.929 2020-08-18 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:A2132V,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1033 B.1.1.462 -0.427777 -0.298934 1.08268 1.07181 1.09367 0.00027846 588.448 2020-05-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:V3748I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1034 B.1.1.82 -0.457766 -0.320274 1.08268 1.07251 1.09295 0 311.209 2020-04-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1a:T1567A,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1035 B.1.1.447 -0.712475 -0.505174 1.08268 1.07613 1.08927 1.14532e-20 8690.86 2020-05-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1036 B.1.1.155 -0.443333 -0.309994 1.08268 1.07216 1.0933 1.49405e-35 311.237 2020-06-02 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:D48G,ORF1b:P314L,S:A222V,S:D614G 1037 B.1.1.4 -0.381189 -0.265925 1.08268 1.07045 1.09504 1.62031e-23 328.161 2020-06-09 N:D3L,N:G204R,N:P383A,N:R203K,N:S235F,N:T271I,ORF14:G50N,ORF1a:A1708D,ORF1a:A2344T,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF3a:D27Y,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1038 B.1.1.484 -1.312 -0.980137 1.08267 1.0791 1.08626 7.30575e-22 730.644 2020-05-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:M3752I,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1039 B.1.1.26 -0.429796 -0.300369 1.08267 1.0718 1.09366 3.67441e-19 1524.55 2020-04-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1871G,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1040 B.1.1.231 -0.326828 -0.227604 1.08267 1.06836 1.09716 1.09777e-12 397359 2020-04-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1b:P314L,ORF8:Y73C,S:D614G,S:N501Y,S:P681H,S:T716I 1041 B.1.1.114 -0.490584 -0.343716 1.08267 1.07311 1.0923 0 311.23 2020-04-03 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:V77F,S:A222V,S:D614G,S:L18F 1042 B.1.1.12 -0.511665 -0.358827 1.08267 1.0735 1.09191 1.00076e-15 25623.4 2020-06-13 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1043 B.1.1.109 -0.40811 -0.284979 1.08266 1.07118 1.09427 4.73819e-36 311.252 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1044 B.1.1.83 -0.423157 -0.295653 1.08266 1.07159 1.09385 1.01425e-07 9340.64 2020-03-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:S2500F,ORF1a:T1001I,ORF1a:T1567A,ORF1b:K1383R,ORF1b:M1573I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1045 B.1.1.92 -0.394407 -0.275273 1.08266 1.07075 1.0947 2.42434e-36 311.252 2020-06-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P1001S,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1046 B.1.173 -0.393615 -0.274713 1.08266 1.07072 1.09473 1.33629e-20 756.261 2020-05-22 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3618V,ORF1a:P959S,ORF1a:T224I,ORF1a:T3255I,ORF1a:T4175I,ORF1b:P314L,S:D614G,S:P681H,S:T478K,S:T732A 1047 B.1.1.115 -0.4492 -0.31417 1.08266 1.07219 1.09323 1.54638e-34 311.414 2020-06-23 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:E2551D,ORF1a:G989S,ORF1b:G2510C,ORF1b:P314L,ORF3a:V77F,S:A222V,S:D614G,S:L18F 1048 B.1.1.361 -0.409168 -0.285729 1.08266 1.07117 1.09427 4.34642e-36 311.302 2020-06-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:D83G,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1049 B.1.1.480 -0.530105 -0.372081 1.08265 1.07377 1.09162 9.69919e-26 526.087 2020-04-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1050 B.1.1.171 -0.377102 -0.263036 1.08265 1.07016 1.09529 4.53738e-17 10704.2 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1a:V3718F,ORF1b:P314L,S:A222V,S:D614G 1051 B.1.1.270 -0.289766 -0.201586 1.08265 1.06641 1.09913 0 311.145 2020-03-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A599V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:D2270Y,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1052 B.1.1.326 -0.71689 -0.508446 1.08265 1.07605 1.08929 5.31638e-09 100854 2020-05-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1053 B.1.1.29 -0.46516 -0.325547 1.08265 1.07249 1.0929 0 311.342 2020-04-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:D203N,ORF1a:I2230T,ORF1a:K322N,ORF1a:T1001I,ORF1a:T1542I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:Y144S 1054 B.1.1.227 -0.430665 -0.300986 1.08264 1.07167 1.09373 4.14036e-24 321.216 2020-06-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:K3353R,ORF1a:L2609F,ORF1a:M585T,ORF1b:E2315K,ORF1b:P160S,ORF1b:P314L,ORF3a:D155Y,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T549I,S:T716I 1055 B.1.1.485 -0.457115 -0.31981 1.08264 1.07226 1.09311 383.286 389615 2020-04-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1a:V3748I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1056 B.1.1.203 -0.451093 -0.315519 1.08263 1.07211 1.09326 1.8396e-35 311.292 2020-06-11 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1057 B.1.1.249 -0.498655 -0.349497 1.08263 1.07309 1.09225 0 311.407 2020-04-02 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1058 B.1.1.208 -0.336823 -0.234635 1.08263 1.06854 1.09691 0 311.275 2020-04-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3454V,ORF1a:Q3826H,ORF1a:T1035I,ORF1b:P314L,ORF3a:L46F,S:D614G 1059 B.1.1.13 -0.336596 -0.234476 1.08263 1.06853 1.09692 0 311.222 2020-03-28 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:M1586I,ORF1a:T1665I,ORF1b:P314L,S:A222V,S:D614G,S:P1162R 1060 B.1.1.107 -0.452887 -0.316797 1.08263 1.07212 1.09324 4.39271e-35 311.446 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF14:P29L,ORF1a:E899D,ORF1a:T1840I,ORF1b:A2585S,ORF1b:P314L,ORF1b:V2237F,ORF7a:E95STOP,ORF8:V62L,S:A222V,S:D614G,S:L18F,S:T51I 1061 B.1.1.213 -0.329765 -0.22967 1.08263 1.06821 1.09724 0 311.25 2020-03-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:L2146F,ORF1b:P314L,S:D614G 1062 B.1.1.166 -0.317857 -0.221299 1.08262 1.06766 1.0978 1.29341e-18 345.62 2020-03-16 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A1812V,ORF1b:P314L,S:A222V,S:D614G 1063 B.1.1.125 -0.373558 -0.260533 1.08262 1.06987 1.09553 3.23211e-25 316.446 2020-06-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF7b:S5L,S:A222V,S:D614G,S:L18F 1064 B.1.1.14 -0.463634 -0.324459 1.08261 1.07229 1.09304 2.38839e-29 430.373 2020-04-18 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 1065 B.1.1.268 -0.784439 -0.558859 1.08261 1.0765 1.08876 3.80096e-21 2853.1 2020-06-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1066 B.1.1.43 -0.392649 -0.274029 1.08261 1.07041 1.09495 3.89563e-30 381.705 2020-04-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 1067 B.1.1.197 -0.351779 -0.245168 1.08261 1.069 1.0964 0 311.364 2020-04-15 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:Q2425H,ORF8:I10T,S:D614G 1068 B.1.1.217 -0.40151 -0.280302 1.08261 1.07066 1.09469 3.60856e-14 322450 2020-06-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:R207C,ORF1b:P314L,S:D614G 1069 B.1.1.148 -0.709525 -0.502988 1.08261 1.07583 1.08943 1.63e-18 2145.22 2020-06-03 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A903V,ORF1b:P314L,ORF3a:W131C,S:A222V,S:D614G 1070 B.1.532 -0.656726 -0.464066 1.0826 1.07525 1.09 4.3909e-23 419.858 2020-07-18 N:G18V,N:G204R,N:R203K,ORF14:G50N,ORF1b:H1979Y,ORF1b:P314L,ORF9b:V15L,S:D614G 1071 B.1.1.16 -0.544329 -0.382326 1.0826 1.07373 1.09153 0 311.546 2020-04-06 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3454V,ORF1b:P314L,S:A222V,S:D614G,S:E583D 1072 B.1.1.302 -0.33365 -0.232403 1.08258 1.06808 1.09728 9.68922e-14 1.22541e+06 2020-08-03 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1073 B.1.1.154 -0.32659 -0.227437 1.08257 1.06766 1.09768 0 311.371 2020-03-31 N:A182S,N:A220V,N:P365S,ORF10:V30L,ORF14:K28N,ORF14:L67F,ORF1a:I431M,ORF1b:P314L,ORF1b:T1274I,S:A222V,S:D614G 1074 B.1.1.380 -0.51753 -0.363039 1.08256 1.07312 1.09209 6.95743e-19 13513.6 2020-06-30 M:F28L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L4182F,ORF1a:T1001I,ORF1a:T760I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1075 B.1.1.95 -0.357431 -0.249153 1.08256 1.06891 1.09639 1.20548e-20 745.518 2020-05-18 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A211T,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:E1808D,ORF1b:K1383R,ORF1b:P1001S,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1076 B.1.1.376 -0.561489 -0.394715 1.08255 1.07381 1.09137 1.28566e-18 22611.4 2020-06-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF10:Q29STOP,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1077 B.1.1.436 -0.66893 -0.473031 1.08255 1.0752 1.08995 1.46333e-17 703127 2020-03-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 1078 B.1.1.253 -0.464071 -0.324771 1.08255 1.07195 1.09325 1.23959e-20 2718.71 2020-06-02 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:D2499N,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1079 B.1.1.210 -0.568425 -0.399732 1.08254 1.07388 1.09128 8.71853e-21 1810.07 2020-04-22 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:N211Y 1080 B.1.1.228 -0.422953 -0.295508 1.08254 1.07091 1.0943 2.72975e-17 93829 2020-06-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1b:P314L,ORF8:Y73C,S:D614G 1081 B.1.1.55 -0.355703 -0.247934 1.08254 1.0687 1.09656 0 311.517 2020-04-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:H110Y,ORF1a:I2230T,ORF1a:I3737V,ORF1a:L730F,ORF1a:T1001I,ORF1b:L1681F,ORF1b:P2256S,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T572I,S:T716I 1082 B.1.1.147 -0.489789 -0.343147 1.08253 1.0724 1.09275 3.40501e-35 311.654 2020-06-04 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A903V,ORF1b:P314L,S:A222V,S:D614G,S:M1229T 1083 B.1.1.406 -0.425251 -0.29714 1.08252 1.07086 1.09431 4.38135e-19 58939.6 2020-07-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1a:T4087I,ORF1b:P314L,ORF3a:E194D,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1084 B.1.1.426 -0.748279 -0.531793 1.08252 1.07587 1.08921 1.42668e-21 5679.61 2020-06-18 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1a:V1291F,ORF1b:D2576G,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1085 B.1.1.438 -0.652609 -0.461046 1.08252 1.0749 1.0902 6.20722e-17 13513.6 2020-03-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1086 B.1.1.221 -0.731056 -0.518966 1.08252 1.07571 1.08937 6.23615e-16 958084 2020-06-16 N:D3L,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:N501Y 1087 B.1.1.367 -0.448796 -0.313883 1.08252 1.07145 1.0937 7.13706e-18 6216 2020-06-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E913D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF3a:P240S,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1088 B.1.1.262 -0.40767 -0.284667 1.08252 1.07034 1.09484 2.80849e-36 311.618 2020-05-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:I2278V,ORF1a:T1001I,ORF1b:E1871G,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1089 B.1.1.200 -0.378644 -0.264126 1.08252 1.0694 1.0958 1.61519e-19 1588.74 2020-06-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:Y4080H,ORF1b:P314L,S:D614G 1090 B.1.1.93 -0.864339 -0.619365 1.08251 1.07674 1.08832 2.75754e-19 801.353 2020-06-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1808D,ORF1b:K1383R,ORF1b:P1001S,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1091 B.1.1.137 -0.262611 -0.18257 1.08251 1.06359 1.10177 0 311.413 2020-03-25 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G 1092 B.1.1.464 -0.411344 -0.287272 1.08251 1.07037 1.09478 4.94004e-16 74283.9 2020-04-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:I671V,ORF1a:T1001I,ORF1a:V1291F,ORF1b:P314L,ORF3a:G188C,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1093 B.1.1.118 -0.65641 -0.463834 1.0825 1.07486 1.09019 6.4067e-15 11649.4 2020-05-31 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1094 B.1.1.275 -0.468016 -0.327585 1.08249 1.07176 1.09333 1.80154e-13 586942 2020-04-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 1095 B.1.1.3 -0.293576 -0.204257 1.08249 1.0654 1.09985 0 311.559 2020-04-06 N:D3L,N:G204P,N:P383L,N:R203K,N:S235F,N:T135I,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1096 B.1.1.220 -0.293037 -0.203879 1.08248 1.06534 1.09991 6.42519e-20 56493.6 2020-03-30 N:D3L,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:N501Y 1097 B.1.1.192 -0.459975 -0.321849 1.08248 1.07153 1.09355 9.1569e-07 64372.4 2020-04-17 N:T205I,ORF14:L52F,ORF1a:Q1009R,ORF1b:M1156I,ORF1b:P314L,ORF1b:S1958G,S:D614G,S:P681H 1098 B.1.1.360 -0.445559 -0.311579 1.08248 1.07114 1.09393 0 311.747 2020-04-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:D83G,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1099 B.1.1.187 -0.767496 -0.546154 1.08248 1.07588 1.08911 4.31316e-21 1091.05 2020-06-27 E:L21F,M:I82T,N:A12G,N:T205I,ORF14:L52F,ORF1a:T2007I,ORF1b:P314F,ORF9b:H9D,S:D614G,S:E484K,S:F888L,S:Q52R,S:Q677H 1100 B.1.1.450 -2.00074 -1.6338 1.08247 1.07993 1.08502 2.01907e-21 616.907 2020-11-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L730F,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1101 B.1.1.279 -0.650245 -0.459313 1.08247 1.07466 1.09033 2.03858e-20 443.784 2020-06-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 1102 B.1.1.459 -0.836261 -0.597989 1.08246 1.07637 1.08859 1.47341e-21 6248.88 2020-04-17 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 1103 B.1.1.237 -0.46861 -0.328009 1.08246 1.0716 1.09343 3.14888e-24 330.685 2020-05-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1b:P314L,ORF8:Q27STOP,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1104 B.1.1.59 -0.356913 -0.248787 1.08245 1.0682 1.0969 1.94424e-17 27976.3 2020-06-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:H1113Y,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:Q677H,S:S982A,S:T716I 1105 B.1.1.90 -0.913504 -0.657105 1.08245 1.07686 1.08808 1.09372e-19 19145.6 2020-05-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L104I,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P1001S,ORF1b:P314L,ORF7a:C23F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K150T,S:N501Y,S:P681H,S:S982A,S:T716I 1106 B.1.1.88 -0.60418 -0.425674 1.08245 1.07399 1.09098 2.5234e-23 513.398 2020-03-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:G224C,ORF3a:V225F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1107 B.1.1.365 -0.410065 -0.286364 1.08245 1.07 1.09504 7.1332e-36 311.889 2020-06-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E913D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:M2259I,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1108 B.1.1.162 -0.465476 -0.325773 1.08244 1.07144 1.09356 2.87864e-17 32774 2020-03-24 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF9b:R13H,S:A222V,S:A262S,S:D614G 1109 L.4 -1.03682 -0.753634 1.08243 1.07746 1.08743 6.55753e-21 644.68 2020-07-07 N:M234I,N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,ORF8:V100L,S:D614G,S:L452R,S:S13I,S:W152C 1110 B.1.1.437 -0.560172 -0.393763 1.08243 1.07323 1.0917 9.04821e-19 13274.2 2020-06-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 1111 L.2 -0.461211 -0.32273 1.08243 1.07126 1.09371 1.0913e-14 323314 2020-04-06 N:M234I,N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 1112 B.1.1.441 -0.872089 -0.625287 1.08242 1.0765 1.08838 4.63168e-19 1394.2 2020-06-26 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1113 B.1.1.344 -0.659166 -0.465857 1.08242 1.07456 1.09033 3.59786e-16 675675 2020-05-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:S2103F,ORF1a:T1001I,ORF1a:T4364I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1114 B.1.1.331 -0.360691 -0.251452 1.08241 1.06807 1.09694 4.77295e-20 42915.3 2020-03-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1115 B.1.1.291 -0.437043 -0.305519 1.08241 1.07056 1.09439 3.95112e-18 78536.5 2020-05-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:P4223L,ORF1a:R2336K,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1116 B.1.1.378 -0.309578 -0.215484 1.0824 1.06566 1.09941 6.69816e-18 4361.11 2020-03-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1117 N.1 -0.58966 -0.415121 1.08236 1.0734 1.0914 2.06124e-21 712.862 2020-04-06 N:T205I,ORF14:L52F,ORF1a:I1839V,ORF1a:I4205V,ORF1a:K714R,ORF1a:T265I,ORF1b:D1183Y,ORF1b:G662V,ORF1b:P314L,ORF3a:Q57H,S:D614G,S:L452R,S:S13I,S:W152C 1118 B.1.1.346 -0.569585 -0.400571 1.08233 1.07295 1.09179 2.57351e-22 2498.76 2020-09-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:N460Y,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1119 B.1.1.372 -0.279515 -0.194402 1.0823 1.06307 1.10188 114.137 372214 2020-03-15 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1120 B.1.1.363 -0.374955 -0.26152 1.08223 1.06747 1.09718 2.22873e-35 312.07 2020-04-10 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1121 B.1.1.89 -0.312178 -0.21731 1.08214 1.06395 1.10065 6.91683e-16 21208.1 2020-03-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P1001S,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1122 B.1.1.47 -0.404415 -0.28236 1.08213 1.06802 1.09644 2.46787e-15 616804 2020-07-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:I3944M,ORF1a:Q998H,ORF1a:S2255F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1123 B.1.1.254 -0.370906 -0.25866 1.08212 1.06669 1.09778 3.00111e-16 62191.6 2020-03-17 M:V70L,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:M1586I,ORF1a:T1001I,ORF1b:D2499N,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1124 B.1.1.113 -0.368336 -0.256846 1.0821 1.06646 1.09798 5.20233e-20 21509.4 2020-03-30 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A498V,ORF1b:K2063R,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1125 B.1.1.164 -0.251665 -0.174915 1.08208 1.05908 1.10558 5.04924e-16 19411.7 2020-03-23 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,S:A222V,S:A262S,S:D614G,S:D80Y,S:N164T 1126 B.1.1.266 -0.616048 -0.434316 1.08208 1.07262 1.09162 1.11353e-15 788062 2020-07-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1871G,ORF1b:K1383R,ORF1b:P314L,ORF3a:V90F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1127 B.1.1.218 -0.577416 -0.406242 1.08207 1.07193 1.0923 4.61413e-08 238791 2020-07-30 N:D3E,N:G204R,N:R203K,ORF14:G50N,ORF1a:R207C,ORF1b:P314L,S:D614G 1128 B.1.1.61 -0.388995 -0.271444 1.08205 1.06698 1.09734 7.6892e-19 76981.6 2020-03-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G1125C,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1129 B.1.1.277 -0.260348 -0.180987 1.08202 1.05932 1.1052 8.14392 2.15114e+06 2020-07-24 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 1130 B.1.1.75 -0.450662 -0.315212 1.08194 1.06842 1.09563 2.85125e-16 342454 2020-03-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1131 B.1.1.168 -0.438778 -0.306753 1.08191 1.06789 1.09611 2.13965e-18 903.416 2020-04-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1b:P314L,S:A222V,S:D614G 1132 B.1.1.8 -0.271761 -0.188973 1.08188 1.05911 1.10513 2.91167e-20 709.861 2020-03-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1a:T1567A,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1133 B.1.1.358 -2.33072 -2.00075 1.08176 1.07898 1.08454 5.6054e-21 487.499 2020-11-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4087I,ORF1b:P218L,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1134 B.1.1.5 -0.320776 -0.22335 1.08171 1.06141 1.1024 5.55446e-13 1.82684e+06 2020-03-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF14:V49L,ORF1a:A1708D,ORF1a:A2345V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1135 B.1.1.232 -0.333701 -0.232439 1.08164 1.0617 1.10195 7.83509 3.90935e+06 2020-06-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:I2230T,ORF1b:P314L,ORF8:Y73C,S:A570D,S:D614G,S:N501Y,S:P681H,S:T716I 1136 B.1.1.128 -0.695397 -0.492538 1.08163 1.07199 1.09136 1.65092e-18 13656 2020-06-18 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A690V,ORF1a:N3484H,ORF1a:P309L,ORF1b:P314L,ORF3a:A110S,S:A222V,S:D614G 1137 B.1.1.33 -0.305427 -0.21257 1.08159 1.05955 1.10409 8.69995 6.3342e+06 2020-03-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:W131C,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1138 B.1.1.285 -0.279758 -0.194572 1.08158 1.05743 1.10628 0.00349595 223358 2020-03-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:G519S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 1139 B.1.1.369 -0.251564 -0.174845 1.08154 1.05439 1.10938 3.18994e-17 192479 2020-03-09 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:H1108Y,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:E106STOP,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118Y,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1140 B.1.279 -0.64095 -0.452505 1.08146 1.07049 1.09254 2.71213e-18 21943.6 2020-03-29 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V957I,S:D614G 1141 B.1.1.71 -0.290448 -0.202064 1.0812 1.05541 1.10761 0.00109583 83392.2 2020-03-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:G1125C,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1142 B.1.552 -0.462617 -0.323733 1.08113 1.06461 1.09792 4.47453e-21 8990.2 2020-04-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:K3162E,ORF1a:P3504H,ORF1b:G1450R,ORF1b:K134Q,ORF1b:P314L,ORF1b:T1064I,S:D614G,S:L54F,S:P681H 1143 B.1.1.27 -1.84861 -1.47713 1.08058 1.07584 1.08534 0.357097 206862 2020-04-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A599V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:D2270Y,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1144 B.1.1.371 -1.66791 -1.30058 1.08057 1.0753 1.08586 5.67927e-18 138841 2020-08-03 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:M2259I,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1145 B.1.1.70 -0.360126 -0.251054 1.08053 1.05615 1.10547 98.9879 1.79453e+07 2020-03-17 N:D3L,N:G204R,N:L139F,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G1125C,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T4265I,ORF1b:A707V,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:I68M,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I 1146 B.1.1.44 -1.03746 -0.75414 1.0805 1.07192 1.08915 3.75099e-23 1685.91 2020-08-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:K669E,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T284I,S:T716I 1147 B.1.282 -0.770225 -0.548198 1.08048 1.06888 1.0922 7.90244e-25 439.392 2020-06-16 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF7a:T14I,S:D614G 1148 B.1.1.513 -1.30176 -0.971405 1.08046 1.07355 1.08741 7.20118e-26 321.655 2020-04-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1149 B.1.1.514 -1.80204 -1.43066 1.08046 1.07547 1.08548 2.34162e-21 663.065 2020-05-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:T151I,ORF7a:Q62STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:F490S,S:N501Y,S:P681H,S:S982A,S:T716I 1150 B.1.1.299 -0.743202 -0.528007 1.08036 1.06805 1.09282 3.35148e-36 317.344 2020-06-14 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1151 B.1.1.300 -0.738528 -0.524526 1.08036 1.06797 1.0929 3.58048e-36 317.268 2020-06-15 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:E2268D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1152 B.1.1.301 -0.82599 -0.590201 1.08033 1.06917 1.09161 6.45921e-18 56002.8 2020-05-27 N:D3L,N:G204P,N:R203K,N:S235F,ORF14:E51Q,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1153 B.1.1.10 -0.266234 -0.185105 1.07963 1.04039 1.12035 9.09876e-10 968538 2020-03-08 N:A220V,ORF10:V30L,ORF14:L67F,ORF1b:P314L,ORF3a:A23V,S:A222V,S:D614G,S:L18F 1154 B.1.367 -0.650896 -0.45979 1.07794 1.05676 1.09955 5.35077e-15 940334 2020-07-28 E:L21I,M:I82T,M:L29F,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:E102K,ORF1a:G3278S,ORF1a:T1246I,ORF1a:T1637I,ORF1a:T3287I,ORF1b:P314L,ORF3a:T229N,ORF9b:M78T,ORF9b:P10S,S:C136F,S:D215G,S:D614G,S:E484K,S:H655Y,S:N501Y,S:N679K,S:P9L,S:R190S,S:T716I,S:T859N,S:Y449H 1155 B.1.1.294 -0.780823 -0.556144 1.07757 1.05898 1.09649 8.63198 2.56088e+06 2020-05-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:P4223L,ORF1a:R2336K,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S94F,S:S982A,S:T716I 1156 B.1.1.422 -3.18386 -3.13837 1.07751 1.07288 1.08216 9.49496e-15 13833 2020-12-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:L730F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D138H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1157 B.1.308 -1.53601 -1.17782 1.07731 1.06749 1.08722 2.5602e-15 72919.9 2020-04-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1a:V2149F,ORF1b:P314L,S:D614G 1158 A.2.2 -0.589958 -0.415338 1.07722 1.05154 1.10352 6.57537e-15 5.13389e+06 2020-03-20 1159 M.2 -4.01569 -4.52816 1.07675 1.07272 1.0808 2.08403e-19 13527.8 2020-11-03 N:M234I,N:T205I,ORF14:L52F,ORF1a:I4205V,ORF1a:T265I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:Q57H,ORF8:V100L,S:D614G,S:L452R,S:S13I,S:W152C 1160 B.1.1.466 -2.68384 -2.43743 1.07673 1.07067 1.08281 2.53617e-15 50951.4 2020-07-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A3523V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1161 B.1.1.366 -1.6788 -1.31093 1.07663 1.06686 1.08649 115.777 30106.2 2020-04-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E913D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:M2259I,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF3a:P240S,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1162 B.1.1.373 -3.1674 -3.11371 1.07661 1.0714 1.08184 1.88127e-06 1.03893e+06 2020-09-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:M2259I,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:C61F,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1163 B.1.533 -1.05014 -0.76423 1.07658 1.06092 1.09248 9.26359 2.55116e+06 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T310I,S:D614G 1164 B.1.1.271 -3.27957 -3.28392 1.07653 1.07146 1.08163 2.20717e-19 11382.8 2020-03-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A599V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1a:Y1465C,ORF1b:D2270Y,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1165 M.3 -3.944 -4.39719 1.07648 1.07224 1.08074 7.66024e-20 617.059 2020-10-21 N:M234I,N:P142S,N:T205I,ORF14:L52F,ORF1a:F2827L,ORF1a:I4205V,ORF1a:T265I,ORF1a:V3367I,ORF1b:D1183Y,ORF1b:P314L,ORF3a:A23V,ORF3a:Q57H,ORF8:V100L,S:D614G,S:L452R,S:Q677H,S:S13I,S:W152C 1166 B.1.1.165 -3.91852 -4.35116 1.07638 1.07206 1.08072 1.07877e-30 328.202 2020-09-07 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:D983G,ORF1b:P314L,ORF3a:W69L,S:A222V,S:A262S,S:D614G,S:D80Y,S:E583D,S:N164T 1167 B.1.1.283 -1.32958 -0.995195 1.07599 1.06273 1.0894 12.6562 25368 2020-03-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:K3353R,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 1168 B.1.264.1 -2.91421 -2.74808 1.07572 1.06948 1.082 1.73527e-07 203635 2020-09-08 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:D173G,S:D614G,S:P681H 1169 B.1.600 -2.77641 -2.55976 1.07552 1.06883 1.08225 1.88949e-11 1.38405e+06 2020-05-12 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T1822I,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1170 B.1.444 -4.6677 -5.81732 1.07491 1.07067 1.07916 4.69283e-21 63768.6 2020-08-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1171 B.1.116 -2.80046 -2.5921 1.07488 1.06781 1.082 2.0851e-19 2259.96 2020-05-04 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1172 B.1.528 -4.77694 -6.05064 1.07469 1.07046 1.07894 1.39589e-16 28696.8 2020-05-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:C3059G,ORF1a:M1769I,ORF1a:Q2034L,ORF1b:P1821S,ORF1b:P314L,ORF3a:W128C,S:D614G,S:F157L 1173 B.1.265 -1.85618 -1.48475 1.07396 1.06236 1.08569 3.44711e-16 169436 2020-07-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:D173G,S:D614G,S:P681H 1174 B.1.562 -1.99959 -1.63259 1.07395 1.06315 1.08485 6.81972e-14 194711 2020-12-21 E:L21F,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1175 B.1.377 -1.99123 -1.62379 1.07383 1.06289 1.08489 1.10027e-17 60750.7 2020-05-10 N:G204R,N:G214C,N:P13L,N:R203K,ORF14:G50N,ORF14:M60I,ORF1a:F2387V,ORF1a:F3677L,ORF1a:G3278S,ORF1a:G3676S,ORF1a:L3201P,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:D614G,S:F490S,S:G75V,S:L452Q,S:T76I,S:T859N 1176 B.1.305 -2.26559 -1.92527 1.07376 1.06408 1.08354 2.71887e-17 18250 2020-06-14 N:G204R,N:R203K,ORF14:G50N,ORF1a:G2035R,ORF1b:G1129V,ORF1b:P314L,S:D614G 1177 B.1.541 -3.54053 -3.69962 1.07148 1.06403 1.07898 3.6152e-18 16477.5 2020-08-22 N:A398V,N:G204R,N:R203K,ORF14:G50N,ORF14:M60T,ORF1a:C2165F,ORF1a:I300F,ORF1a:M3761I,ORF1b:E245D,ORF1b:M2025I,ORF1b:P314L,ORF1b:T2084I,ORF3a:T223I,S:D614G 1178 B.1.203 -3.81999 -4.17565 1.07148 1.06458 1.07843 2.95894e-05 435928 2020-07-15 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:N501Y,S:V1176F 1179 B.1.126 -2.06869 -1.70627 1.07135 1.05851 1.08434 1.46706e-14 251253 2020-05-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:Q72H,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T33I,S:T716I 1180 B.1.420 -3.30442 -3.3223 1.07125 1.06313 1.07942 2.86937e-14 478607 2020-06-04 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1a:A2529V,ORF1a:A872T,ORF1a:F3605L,ORF1b:P314L,ORF6:I33T,ORF7b:E33A,S:D614G,S:E484K 1181 B.1.540 -3.41385 -3.49435 1.0712 1.06332 1.07914 1.68263e-16 113893 2020-05-02 N:A398V,N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1a:L681F,ORF1a:P1786L,ORF1b:E245D,ORF1b:M2025I,ORF1b:P314L,ORF1b:T2084I,ORF3a:T223I,S:D614G 1182 B.1.609 -1.6123 -1.24821 1.07111 1.05438 1.0881 8.40537e-15 4.63865e+06 2020-03-28 E:T9I,M:A63T,M:D3G,M:Q19E,N:D343G,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:L106F,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G496S,S:H655Y,S:L981F,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1183 B.1.145 -7.33922 -12.9689 1.07104 1.06733 1.07477 8.48533e-20 12855 2020-04-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:P971L,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1184 B.1.393 -6.19535 -9.53645 1.07104 1.06664 1.07546 3.06411e-15 692685 2020-07-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1a:L3644F,ORF1b:P314L,ORF3a:L15F,S:D614G 1185 B.1.388 -6.40931 -10.1361 1.07098 1.06671 1.07527 0.0030698 118666 2020-06-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T730I,ORF3a:H182Y,S:D614G,S:Y453F 1186 B.1.187 -5.07055 -6.7026 1.07092 1.0655 1.07637 1.48496e-19 51366.5 2020-03-28 N:G204R,N:R203K,ORF14:G50N,ORF1a:D3728N,ORF1b:P314L,S:D614G 1187 B.1.213 -1.62539 -1.26046 1.07089 1.05403 1.08801 1.27229e-09 51971.6 2020-05-10 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1188 B.1.387 -4.95254 -6.43621 1.07087 1.06531 1.07647 1.97486e-23 23573.2 2020-03-10 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1189 B.1.192 -6.45731 -10.2734 1.07087 1.0666 1.07516 3100.01 860822 2020-04-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2994V,ORF1a:L758V,ORF1a:S2103F,ORF1a:V3976F,ORF1b:P2162S,ORF1b:P314L,S:D614G,S:V1122L 1190 B.1.113 -6.78393 -11.233 1.07086 1.06679 1.07495 9.392e-23 15889 2020-06-08 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E2049V,ORF1a:F2780L,ORF1a:I2230T,ORF1a:P1862S,ORF1a:T1001I,ORF1a:T2137I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1191 B.1.143 -5.69605 -8.21248 1.07085 1.06601 1.07572 2.41596e-20 9263.68 2020-05-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1184D,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1192 B.1.106 -4.40449 -5.27558 1.07084 1.06457 1.07715 9.73965e-24 1277.88 2020-05-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1193 B.1.542 -5.30927 -7.25937 1.07084 1.06563 1.07607 6.44578e-15 998.88 2020-04-19 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:M153T 1194 B.1.535 -4.69049 -5.86558 1.07084 1.06495 1.07676 2.98416e-23 666.49 2020-04-03 N:A398V,N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1b:M2025I,ORF1b:P314L,ORF1b:T2084I,ORF3a:T223I,S:D614G 1195 B.1.180 -6.50214 -10.4024 1.07084 1.06658 1.07511 1.92988e-19 23755.4 2020-04-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1b:P314L,ORF1b:V2368F,S:D614G 1196 B.1.256 -2.47161 -2.16935 1.07084 1.05968 1.08211 9.88458e-31 418.429 2020-04-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:Y1734H,ORF1b:P314L,S:D614G,S:R21I,S:R847K 1197 B.1.70 -2.28325 -1.94558 1.07083 1.05875 1.08304 6.26041e-32 375.846 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1198 B.1.208 -4.36134 -5.18953 1.07083 1.06449 1.0772 1.53636e-21 18267.1 2020-03-15 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:N501Y,S:T1027I,S:V1176F 1199 B.1.103 -3.59265 -3.78597 1.07082 1.06312 1.07857 1.37663e-24 2743.48 2020-04-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1200 B.1.380 -6.01531 -9.04686 1.07079 1.06618 1.07542 5.60415e-16 470007 2020-07-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:A1609S,ORF1b:L293S,ORF1b:P314L,S:D614G 1201 B.1.198 -2.17684 -1.82487 1.07077 1.05806 1.08364 0 343.796 2020-04-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:E2031K,ORF1b:P2531S,ORF1b:P314L,S:D614G,S:H655Y 1202 B.1.77 -2.51243 -2.21959 1.07077 1.05974 1.08191 4.61465e-36 343.87 2020-06-01 N:G204L,N:R203K,ORF14:E51STOP,ORF14:G50N,ORF1a:N1898S,ORF1a:R1464W,ORF1b:P2612L,ORF1b:P314L,ORF1b:R2613N,S:D614G 1203 B.1.545 -6.40307 -10.1184 1.07077 1.06643 1.07513 1.24418e-18 56240 2020-03-23 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:M153T 1204 B.1.224 -6.57865 -10.6246 1.07076 1.06653 1.075 4.65023e-22 8198.81 2020-04-21 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:I118M,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1205 B.1.181 -3.35143 -3.39563 1.07076 1.06247 1.0791 1.08487e-20 38149.2 2020-04-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1a:E37D,ORF1b:P314L,S:D614G 1206 B.1.215 -2.1925 -1.84238 1.07075 1.05811 1.08354 1.56504e-24 444.622 2020-03-27 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T1754I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF8:H17Y,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1207 B.1.194 -5.34143 -7.33621 1.07075 1.06554 1.07598 5.86511e-22 657.922 2020-06-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:L758V,ORF1a:S2103F,ORF1a:S2132G,ORF1a:V3976F,ORF1b:D1848Y,ORF1b:P314L,ORF7a:G38V,ORF7a:V29L,S:D614G,S:I834T 1208 B.1.219 -3.47285 -3.58914 1.07074 1.06273 1.0788 2.19668e-16 415371 2020-05-07 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:P681H,S:R190S,S:T1027I,S:T20N,S:V1176F 1209 B.1.67 -2.67689 -2.42837 1.07072 1.06034 1.08121 4.82544e-17 6116.18 2020-03-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:N3212T,ORF1a:P1692S,ORF1b:P314L,S:D614G 1210 B.1.182 -3.1202 -3.04361 1.07072 1.0618 1.07971 2.21122e-24 3253.75 2020-04-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1417N,ORF1b:P314L,S:D614G 1211 B.1.69 -2.28939 -1.95267 1.07071 1.05857 1.08299 8.21596e-24 384.592 2020-03-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:H1613Y,ORF1b:P314L,ORF3a:H93Y,S:D614G,S:R21T 1212 B.1.178 -3.26409 -3.26013 1.07071 1.06218 1.07931 1.2257e-16 68027.1 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1b:P314L,S:D614G 1213 B.1.199 -3.56782 -3.74469 1.07069 1.06287 1.07857 1.50707e-20 13490.3 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:E484K,S:H655Y 1214 B.1.418 -3.03753 -2.92297 1.07068 1.0615 1.07994 5.73243e-29 473.163 2020-04-30 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1a:Q611L,ORF1b:P314L,ORF6:I33T,S:D614G,S:T747I 1215 B.1.547 -3.04616 -2.93545 1.07068 1.06152 1.07992 9.00449e-08 225920 2020-03-20 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1216 B.1.227 -6.12145 -9.33382 1.07065 1.06607 1.07524 1.7315e-18 138929 2020-03-22 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:H388Y,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T4355I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1217 B.1.137 -2.90585 -2.73645 1.07064 1.06102 1.08035 1.11055e-19 4489.46 2020-04-13 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1218 B.1.83 -3.61708 -3.82683 1.07063 1.06288 1.07843 1.17811e-17 339330 2020-03-24 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T899I,S:D614G 1219 B.1.134 -3.06845 -2.96778 1.07062 1.06148 1.07983 1.38956e-19 4512.5 2020-04-21 N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1220 B.1.546 -4.75082 -5.99439 1.07061 1.06471 1.07655 5.06202e-21 3470.92 2020-06-13 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:M153T 1221 B.1.81 -1.85036 -1.4789 1.07061 1.0555 1.08593 1.59598e-23 701.111 2020-04-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T899I,S:D614G 1222 B.1.212 -2.96134 -2.81421 1.07059 1.06111 1.08015 1.00997e-15 258737 2020-03-19 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:N501Y,S:R190S,S:T1027I,S:V1176F 1223 B.1.76 -1.43763 -1.0894 1.07058 1.05114 1.09038 5.96266e-24 346.561 2020-03-05 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1224 B.1.379 -1.57385 -1.21253 1.07057 1.05278 1.08866 0 344.125 2020-03-20 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF3a:V90F,S:D614G 1225 B.1.105 -1.60703 -1.24329 1.07052 1.05304 1.08829 9.85205e-20 1238.66 2020-03-29 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1226 B.1.225 -1.88765 -1.51662 1.07048 1.05554 1.08563 3.19817e-18 966.109 2020-04-17 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:H388Y,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1227 B.1.23 -1.97363 -1.60532 1.07047 1.05616 1.08497 1.79029e-15 58330.4 2020-03-24 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:A859V,ORF1a:H388Y,ORF1a:K1795Q,ORF1a:S1188L,ORF1a:T4355I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1228 B.1.142 -1.51045 -1.15459 1.07045 1.05176 1.08946 8.11874e-22 439.072 2020-03-27 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF3a:G100C,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I,S:Y144S 1229 B.1.195 -1.85062 -1.47916 1.07039 1.05507 1.08594 4.10398e-05 116093 2020-04-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:H655Y 1230 B.1.190 -2.36848 -2.04522 1.07038 1.05837 1.08252 1.42556e-19 77125.8 2020-03-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:L758V,ORF1a:S2103F,ORF1a:V3976F,ORF1b:P314L,S:D614G 1231 B.1.78 -2.21681 -1.86974 1.07037 1.05754 1.08336 8.83865e-17 184693 2020-03-20 N:D144Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:A1283V,ORF1b:L1099F,ORF1b:P314L,ORF3a:V55F,ORF8:T11I,S:A845S,S:D198G,S:D614G,S:T859I,S:V6F 1232 B.1.395 -1.56493 -1.20431 1.07037 1.05223 1.08881 8.61914e-14 6193.63 2020-03-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1a:S3099L,ORF1b:P314L,S:D614G 1233 B.1.35 -1.50796 -1.15234 1.07036 1.05153 1.08952 0 344.5 2020-03-30 N:G204R,N:R203K,ORF14:G50N,ORF1b:N1047S,ORF1b:P314L,S:D614G 1234 B.1.555 -2.27246 -1.93315 1.07035 1.05782 1.08303 2.36545e-18 143672 2020-03-20 N:G204R,N:R203K,N:R209I,ORF14:E56STOP,ORF14:G50N,ORF1a:D3042N,ORF1b:P314L,S:D614G 1235 B.1.210 -2.10483 -1.74544 1.07035 1.05681 1.08405 8.20205e-17 161694 2020-04-11 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:N501Y,S:T1027I,S:V1176F 1236 B.1.384 -1.67188 -1.30434 1.07033 1.0533 1.08763 1.75459e-21 13178.6 2020-04-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 1237 B.1.206 -2.89925 -2.72728 1.07033 1.06047 1.08027 1.77888e-17 123474 2020-06-07 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:N501Y,S:T1027I,S:V1176F 1238 B.1.415 -2.03847 -1.67385 1.07032 1.05632 1.0845 5.02241e-19 8557.26 2020-03-19 E:V58F,N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,ORF6:I33T,S:D614G 1239 B.1.211 -2.09436 -1.73405 1.07028 1.05661 1.08411 1.10515e-20 17520.3 2020-03-12 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:N501Y,S:T1027I,S:V1176F 1240 B.1.201 -1.46878 -1.11711 1.0702 1.05067 1.09009 6.92835e-22 595.523 2020-03-21 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1b:P314L,ORF3a:S253P,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:N501Y,S:V1176F 1241 B.1.390 -3.35281 -3.39778 1.07014 1.0615 1.07884 2.64031e-19 7549.41 2020-04-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1b:P314L,S:D614G 1242 B.1.220 -1.74254 -1.37228 1.0701 1.0535 1.08695 4.58282e-16 206563 2020-03-22 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1243 B.1.179 -1.22529 -0.906966 1.07009 1.04656 1.09415 4.72587e-12 31132.4 2020-03-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1812D,ORF1a:F2321I,ORF1a:S279F,ORF1b:P314L,ORF1b:S2294I,ORF3a:T12I,S:D614G 1244 B.1.383 -1.40341 -1.05924 1.07004 1.04939 1.09109 2.41807e-17 5187.58 2020-03-20 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:K1305N,ORF1a:T1246I,ORF1b:P314L,S:D614G 1245 B.1.153 -1.51614 -1.15975 1.07002 1.05088 1.08952 4.73916e-19 350998 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:P1851S,ORF1b:P314L,ORF8:D63G,S:D614G,S:Q957L 1246 B.1.147 -1.21643 -0.899584 1.0697 1.04538 1.09458 1.57088e-13 796362 2020-03-12 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:P971L,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1247 B.1.151 -1.42148 -1.07513 1.06939 1.04814 1.09107 7.04816e-18 12432.3 2020-03-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:P971L,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1248 B.1.91 -1.05568 -0.768651 1.06936 1.04078 1.09872 2.66157e-16 183822 2020-03-01 N:D377Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:P3371L,ORF1a:S376L,ORF1b:A572S,ORF1b:P314L,S:D614G 1249 B.1.223 -1.13227 -0.830355 1.06929 1.04251 1.09676 2.45638e-12 69333.7 2020-03-17 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:P309S,ORF1a:S1188L,ORF1a:T2166I,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:A688V,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1250 B.1.157 -1.09257 -0.798223 1.06901 1.0408 1.09799 3.45451e-12 69201.7 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:K1230N,ORF1b:P314L,ORF3a:Y91H,S:D614G 1251 B.1.292 -9.87871 -22.5893 1.069 1.06584 1.07217 4.77677e-18 14459.4 2020-06-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1252 B.1.93 -1.07649 -0.785299 1.06816 1.03805 1.09915 6.97746e-12 77487.4 2020-03-11 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF8:P38S,S:D614G 1253 B.1.8 -1.06904 -0.779329 1.06815 1.03782 1.09937 17.7749 751616 2020-03-09 N:G204R,N:R203K,ORF10:F35S,ORF14:G50N,ORF1a:K1895N,ORF1b:K2557R,ORF1b:P314L,S:D614G 1254 B.4.8 -4.26837 -5.00677 1.06795 1.06018 1.07578 6.28527e-17 20016.8 2020-06-11 ORF1a:L3711I,ORF1a:M2259I,ORF1a:S3884L,ORF1a:T265I,ORF1a:T3398I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1255 B.1.595 -1.26741 -0.942287 1.06667 1.03883 1.09526 4.00498e-11 914151 2020-03-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3758V,ORF1a:P3395H,S:A67V,S:L981F,S:N969K,S:T95I 1256 B.1.111 -1.1062 -0.809217 1.06666 1.03481 1.0995 7.35683e-08 3.16105e+06 2020-03-20 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF1b:T2537I,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1257 A.7 -6.12755 -9.35047 1.06632 1.06039 1.07228 2.87958e-23 4352.18 2020-05-06 ORF1a:P2605S,ORF3a:G251V 1258 B.1.252 -2.86374 -2.67825 1.06631 1.05365 1.07911 6.45247e-24 1294.4 2020-04-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:A537S,ORF1b:P314L,ORF8:S67F,S:D614G,S:R21I 1259 B.1.110.3 -2.53185 -2.24371 1.06617 1.05176 1.08077 5.19004e-15 280915 2020-06-10 M:G89S,N:A398V,N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1260 B.1.521 -2.91221 -2.7453 1.066 1.05335 1.0788 2.38083e-18 9892.22 2020-05-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:I300F,ORF1b:P314L,S:D614G 1261 B.1.1.225 -3.60718 -3.81024 1.06567 1.05527 1.07617 1.90418e-18 32430.2 2020-06-28 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1b:P314L,ORF8:R52I,ORF8:Y73C,S:D614G 1262 B.1.557 -4.65283 -5.78594 1.0655 1.05737 1.0737 2.5934e-28 748.066 2020-04-11 N:G204R,N:R203K,ORF14:G50N,ORF1a:D3042N,ORF1a:L3116F,ORF1a:V3968F,ORF1b:P314L,ORF3a:G172C,ORF8:V62L,S:D614G,S:P681H,S:V1230L 1263 B.1.251 -3.29511 -3.30789 1.06548 1.05399 1.07709 2.07471e-36 360.273 2020-06-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:S443F,ORF1b:P314L,S:D614G,S:R21I 1264 B.1.248 -3.42685 -3.51512 1.06548 1.05443 1.07664 1.84831e-27 406.697 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1a:G989S,ORF1b:P314L,S:D614G 1265 B.1.250 -2.1002 -1.7404 1.06545 1.04746 1.08375 1.33849e-22 598.377 2020-03-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1298V,ORF1a:A385V,ORF1a:P2685T,ORF1b:A1798S,ORF1b:P314L,S:D614G,S:R21I 1266 B.1.249 -3.68373 -3.93954 1.06539 1.05507 1.07582 5.36113e-36 360.582 2020-04-28 N:G204R,N:R203K,ORF14:G50N,ORF1b:P1342S,ORF1b:P314L,S:D614G,S:R21I 1267 B.1.559 -3.32689 -3.35724 1.06528 1.05379 1.0769 1.88366e-31 403.311 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1268 B.1.478 -5.85005 -8.60957 1.06521 1.05864 1.07183 1.54307e-14 254287 2020-09-28 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1269 B.1.441 -4.16757 -4.81266 1.06514 1.0559 1.07447 0.00748404 1.39956e+06 2020-06-01 N:G204R,N:P13S,N:R203K,N:S197T,ORF14:G50N,ORF1a:Q3729R,ORF1a:T1638I,ORF1b:P314L,ORF1b:T76I,ORF3a:W149C,S:D614G,S:L18F,S:N440K 1270 B.1.436 -5.9032 -8.74896 1.06502 1.05844 1.07164 1.35569e-16 289643 2020-07-21 N:G204R,N:R203K,N:S194L,ORF14:G50N,ORF14:Q41STOP,ORF1a:H2092Y,ORF1a:I1002T,ORF1a:K2622N,ORF1a:N2603D,ORF1a:P1803S,ORF1b:P314L,S:D614G,S:E1202Q,S:T859I 1271 B.1.254 -3.37599 -3.43428 1.065 1.05352 1.07661 1.24841e-30 409.281 2020-04-13 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:W69L,S:D614G,S:R21I 1272 B.1.471 -3.17598 -3.12655 1.06499 1.05279 1.07734 18.5037 730685 2020-04-23 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:K75N,S:D614G 1273 B.1.350.1 -4.83374 -6.17395 1.06487 1.05679 1.07302 8.61364e-35 362.126 2020-05-25 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P314L,ORF8:V62L,S:D138Y,S:D614G,S:M153T 1274 B.1.385 -4.1764 -4.82949 1.06486 1.05551 1.0743 1.80997e-19 26756.8 2020-06-29 N:D103Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1b:P314L,S:D614G 1275 B.1.9.4 -4.21429 -4.90211 1.06477 1.05546 1.07416 1.70976e-15 538238 2020-08-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:G192D,ORF1b:A1491V,ORF1b:P314L,S:D614G 1276 B.1.462 -7.40849 -13.1947 1.06465 1.05931 1.07001 5.07708e-17 157644 2020-04-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2320T,ORF1b:P314L,S:D614G 1277 B.1.164 -7.91309 -14.9012 1.06462 1.05962 1.06965 5.27863e-15 126151 2020-06-24 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:T732A 1278 B.1.482 -7.76481 -14.3884 1.06461 1.0595 1.06974 5.72608e-16 52327.2 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1279 B.1.473 -4.90797 -6.33713 1.06458 1.0565 1.07271 3.03827e-18 13362.5 2020-04-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:E2212G,ORF1b:P314L,ORF3a:K75N,S:D614G 1280 B.1.442 -4.55296 -5.57761 1.06453 1.05581 1.07333 3.81973e-22 867.308 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1a:P1921S,ORF1b:P314L,ORF1b:T1404M,S:D614G 1281 B.1.158 -7.11994 -12.2677 1.06453 1.05895 1.07015 2.67712e-24 426.03 2020-04-02 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1282 B.1.270 -3.33737 -3.3736 1.06451 1.05262 1.07654 9.98078e-24 783.423 2020-03-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:S279F,ORF1b:P314L,ORF3a:K136E,S:D614G 1283 B.1.483 -5.32254 -7.29103 1.06451 1.05704 1.07203 1.28483e-29 363.345 2020-03-15 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:S640F 1284 B.1.110.1 -13.0424 -38.4544 1.0645 1.06145 1.06757 1.68105e-16 76250.9 2020-04-06 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1285 B.1.274 -4.98513 -6.50921 1.0645 1.05652 1.07254 3.46483e-25 2100.05 2020-05-11 N:G204R,N:R203K,ORF14:G50N,ORF1a:I693V,ORF1a:L3776F,ORF1a:Q998H,ORF1a:T224I,ORF1b:A1219S,ORF1b:P314L,ORF3a:E226G,S:D614G 1286 B.1.9.2 -8.62877 -17.5085 1.06448 1.05986 1.06912 1.42357e-23 587.832 2020-05-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:T2277I,ORF1b:P314L,S:D614G 1287 B.1.458 -9.33816 -20.3097 1.06448 1.0602 1.06877 2.65877e-23 410.243 2020-05-25 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1288 B.1.37 -2.6848 -2.43867 1.06447 1.04968 1.07947 5.61373e-21 9569.79 2020-03-12 N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:F2387V,ORF1a:G3278S,ORF1a:L3201P,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:D614G,S:F490S,S:G75V,S:L452Q,S:T76I,S:T859N 1289 B.1.9.1 -3.74426 -4.04349 1.06446 1.05383 1.0752 1.30462e-27 410.983 2020-04-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:V1887I,ORF1b:P314L,S:D614G 1290 B.1.479 -5.98258 -8.95933 1.06446 1.0578 1.07117 1.60413e-20 1546.79 2020-04-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:E37D,ORF1a:L4182F,ORF1a:T2648I,ORF1b:P314L,ORF3a:A110V,ORF8:A51V,S:D138Y,S:D614G,S:L54F 1291 B.1.161 -3.28158 -3.28702 1.06445 1.05232 1.07672 9.80361e-29 589.754 2020-04-12 M:F28L,N:G204R,N:Q418H,N:R203K,N:S187L,ORF14:G50N,ORF14:H34Y,ORF1b:G1362R,ORF1b:P1936H,ORF1b:P314L,S:D614G,S:E484K,S:G769V,S:W152L 1292 B.1.245 -5.74561 -8.33919 1.06444 1.0575 1.07144 7.79599e-18 1415.92 2020-04-05 M:T175M,N:G204R,N:R203K,N:T24N,ORF14:G50N,ORF1b:P314L,ORF9b:L21M,S:D614G 1293 B.1.9.3 -6.34081 -9.94204 1.0644 1.05809 1.07075 5.53297e-21 16189.4 2020-04-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1294 B.1.110.2 -4.26393 -4.99813 1.06438 1.05501 1.07384 3.14659e-24 364.823 2020-03-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1295 B.1.276 -3.71809 -3.99836 1.06431 1.05352 1.0752 4.17133e-21 1573.92 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1296 B.1.124 -3.04512 -2.93394 1.06428 1.05111 1.07762 2.60048e-23 696.361 2020-04-23 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1a:T2124I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1297 B.1.112 -3.1889 -3.14595 1.06425 1.05165 1.077 3.30446e-22 4419.04 2020-04-09 N:D3L,N:G204R,N:P326S,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF1b:T2537I,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1298 B.1.163 -5.4032 -7.48505 1.06424 1.05679 1.07175 4.19917e-23 1045.69 2020-04-07 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1299 B.1.9.5 -3.26778 -3.26578 1.06421 1.05189 1.07667 0.186038 253959 2020-03-30 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1300 B.1.277 -3.15986 -3.10245 1.06416 1.05139 1.07708 8.50571e-21 26592.6 2020-03-15 M:I73M,N:G204R,N:R203K,ORF14:G50N,ORF1a:S944L,ORF1b:G128C,ORF1b:P314L,ORF9b:P3L,S:D138Y,S:D614G,S:S477N 1301 B.1.443 -4.89612 -6.31092 1.06412 1.05585 1.07246 1.21877e-18 62222.3 2020-06-08 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3523V,ORF1a:L3180M,ORF1b:P314L,ORF3a:T151I,ORF7b:F19S,S:D614G 1302 B.1.162 -2.86829 -2.68451 1.06411 1.05001 1.07839 1.93854e-19 2754.97 2020-03-25 M:F28L,N:G204R,N:Q418H,N:R203K,N:S187L,ORF14:G50N,ORF14:H34Y,ORF1b:G1362R,ORF1b:P1936H,ORF1b:P314L,S:D614G,S:E484K,S:G769V,S:W152L 1303 B.1.391 -1.34316 -1.00687 1.0641 1.03422 1.09484 1.24925e-12 14684.2 2020-03-12 N:D103Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:D1036E,ORF1a:L3644F,ORF1b:P314L,S:D614G 1304 B.1.467 -10.0963 -23.5425 1.06401 1.05996 1.06806 3.74576e-17 131247 2020-06-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:A647S,ORF1b:P314L,S:D614G 1305 B.1.9 -2.51994 -2.2289 1.06383 1.0476 1.08031 2.7828 156922 2020-03-22 N:G204R,N:N11S,N:R203K,ORF14:G50N,ORF1b:P314L,ORF9b:M8V,S:D614G 1306 B.1.475 -11.3966 -29.6629 1.06371 1.06008 1.06735 5.10883e-23 651.448 2020-04-05 N:G204R,N:P13S,N:R203K,ORF10:V30L,ORF14:G50N,ORF1b:P314L,ORF1b:Q2425H,ORF8:A65V,S:D614G,S:K1073N 1307 B.1.110 -2.10072 -1.74097 1.06364 1.04402 1.08362 3.19407e-16 1.11718e+06 2020-03-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A690V,ORF1a:F2780L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1308 B.1.465 -1.73864 -1.36849 1.0635 1.0397 1.08785 3.22138 18489.5 2020-03-14 N:G204R,N:R203K,N:T296I,N:T362I,ORF14:G50N,ORF1b:P314L,S:D614G,S:E156D,S:Q1208H 1309 B.1.476 -16.0086 -57.2543 1.06345 1.06083 1.06607 1.61782e-14 82601.2 2020-03-29 N:G204R,N:P13S,N:R203K,ORF10:V30L,ORF14:G50N,ORF1b:A434V,ORF1b:P314L,ORF1b:Q2425H,ORF8:A65V,S:D614G,S:K1073N,S:M153I 1310 B.1.281 -14.1472 -45.0125 1.06343 1.06046 1.0664 2.55345e-19 256699 2020-06-22 N:G204R,N:P383S,N:R203K,ORF14:G50N,ORF1b:K2557R,ORF1b:P314L,ORF1b:T284I,ORF3a:A23S,ORF3a:G224C,S:A1078S,S:D614G,S:K854N,S:P479S 1311 B.1.439 -1.75083 -1.38036 1.06316 1.03916 1.08772 1.16613e-16 25656.1 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:T151I,ORF8:A65V,S:D614G 1312 B.1.159 -4.99712 -6.53616 1.06315 1.05467 1.07169 1.65019e-17 116879 2020-03-22 N:G204R,N:G30R,N:R203K,ORF14:G50N,ORF1a:S3001N,ORF1a:T2648I,ORF1b:P314L,ORF3a:Q185H,ORF9b:M26I,S:D614G 1313 B.1.13 -1.51202 -1.15601 1.06313 1.03535 1.09166 2.67474e-16 43713.4 2020-03-11 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:S98F,S:T716I 1314 B.1.22 -2.02155 -1.65583 1.06269 1.04144 1.08438 272.428 1.85698e+06 2020-03-12 N:G204R,N:P80R,N:R203K,ORF14:G50N,ORF14:V49L,ORF1a:K1795Q,ORF1a:S1188L,ORF1b:E1264D,ORF1b:P314L,ORF3a:S253P,ORF8:E92K,ORF9b:Q77E,S:D138Y,S:D614G,S:E484K,S:H655Y,S:K417T,S:L18F,S:N501Y,S:P26S,S:R190S,S:T1027I,S:T20N,S:V1176F 1315 B.1.470 -3.15126 -3.08964 1.06268 1.04898 1.07655 1.08658e-12 1.3805e+06 2020-05-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:M3655I,ORF1b:P314L,ORF3a:K75N,S:D614G 1316 B.1.1.284 -2.06502 -1.70231 1.06121 1.03905 1.08384 1.04081e-14 1.62786e+07 2020-05-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:K2557R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:K1191N,S:N501Y,S:P681H,S:S982A,S:T716I 1317 A.24 -9.45853 -20.8065 1.06089 1.05594 1.06585 1.00365e-15 484221 2020-07-11 ORF1a:P765S,ORF3a:G251V 1318 A.26 -3.77684 -4.10006 1.0607 1.04827 1.07328 0 375.859 2020-04-02 ORF1a:A2249V,ORF1a:I739V,ORF1a:P765S,ORF3a:G251V 1319 A.25 -7.57849 -13.7575 1.06068 1.05446 1.06694 9.7995e-17 296008 2020-06-22 ORF1a:I739V,ORF1a:P765S,ORF3a:G251V 1320 A.15 -3.41078 -3.48946 1.06052 1.04666 1.07456 3.15681e-21 7516.07 2020-05-11 ORF1b:R1315C 1321 B.1.1.465 -5.45355 -7.60754 1.06043 1.05171 1.06922 3.39937e-24 2084.56 2020-04-21 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E3310N,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1322 B.1.614 -16.054 -57.5718 1.0601 1.05709 1.06312 5.14241e-19 13336.6 2020-06-15 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1a:V1887I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:A701V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1323 B.1.1.392 -14.2432 -45.6075 1.05703 1.05323 1.06085 2.72969e-19 4520.05 2020-09-16 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P1975S,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1324 B.1.1.160 -8.58501 -17.3428 1.05699 1.05068 1.06333 2.91301e-27 787.58 2020-05-03 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:K3353R,ORF1b:P314L,ORF3a:K16N,ORF7a:T120I,S:A222V,S:D614G,S:E583D 1325 B.1.1.135 -4.95896 -6.45056 1.05662 1.04558 1.06778 3.51591e-19 31311.1 2020-06-19 N:A220V,N:T141I,ORF10:V30L,ORF14:L67F,ORF1a:L2609F,ORF1b:P314L,S:A222V,S:D614G 1326 B.1.426 -5.25822 -7.1383 1.05482 1.04376 1.066 8.57808e-18 209243 2020-04-14 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:T20I 1327 B.1.567 -8.22592 -16.0139 1.05464 1.04752 1.06182 5.48883e-18 84322.1 2020-06-08 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3497V,ORF1a:S2193F,ORF1b:P314L,S:D614G 1328 B.1.595.4 -10.1964 -23.9875 1.05457 1.04881 1.06037 1.79616e-20 1227.34 2020-04-30 E:T9I,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:P3395H,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:G339D,S:H655Y,S:L981F,S:N679K,S:N856K,S:N969K,S:P681H,S:Q954H,S:S371L,S:S373P,S:S375F,S:T95I 1329 B.1.595.3 -10.5555 -25.6208 1.05451 1.04893 1.06011 1.03217e-19 2440.64 2020-07-07 E:T9I,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:P3395H,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:A67V,S:G339D,S:L981F,S:N969K,S:Q954H,S:S371L,S:S373P,S:S375F,S:T95I 1330 B.1.589 -7.47153 -13.4019 1.05431 1.04639 1.0623 4.31165e-20 5030.3 2020-05-27 M:I82T,N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:T2936I,ORF1a:T3284I,ORF1b:A2513S,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 1331 B.1.595.2 -11.4297 -29.8281 1.0543 1.04911 1.05951 2.56554e-19 2357.61 2020-06-24 E:T9I,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:P3395H,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:A67V,S:L981F,S:N969K,S:Q954H,S:T95I 1332 B.1.595.1 -7.53758 -13.6209 1.05418 1.0463 1.06213 7.25204e-18 30345.1 2020-06-22 E:T9I,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:I3758V,ORF1a:P3395H,ORF1b:P314L,ORF9b:P10S,S:A67V,S:L981F,S:N969K,S:T95I 1333 B.1.1.190 -6.32492 -9.89727 1.05402 1.04458 1.06355 0 399.869 2020-03-28 E:L21F,M:I82T,N:A12G,N:T205I,ORF14:L52F,ORF1a:F3677L,ORF1a:T2007I,ORF1b:P314F,ORF9b:H9D,S:D614G,S:E484K,S:F888L,S:Q52R,S:Q677H 1334 B.1.1.267 -7.19737 -12.513 1.05398 1.04567 1.06236 6.3055e-19 10970 2020-03-31 N:D3L,N:G204R,N:G96S,N:R203K,N:S235F,ORF14:G50N,ORF14:S4L,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:E1871G,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1335 B.1.1.269 -3.13273 -3.06213 1.05392 1.03489 1.0733 1.48006e-16 705484 2020-07-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:A599V,ORF1a:I2230T,ORF1a:Q3966R,ORF1a:T1001I,ORF1b:D2270Y,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1336 B.1.1.38 -9.69801 -21.8133 1.05385 1.04764 1.06008 8.35986e-31 400.682 2020-05-30 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L4182F,ORF1a:T1001I,ORF1b:P218L,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1337 B.1.36.33 -12.3153 -34.4264 1.05384 1.04895 1.05875 3.12272e-20 2800.76 2020-10-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 1338 B.1.313 -6.93843 -11.7028 1.05333 1.04454 1.0622 2.03783e-19 14967.4 2020-06-15 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:V1176F 1339 B.59 -2.18185 -1.83046 1.05197 1.0231 1.08166 2.72308e-11 481565 2020-03-15 N:S194L,ORF14:Q41STOP,ORF1a:P2046L,ORF1a:T265I,ORF1b:L1248F,ORF1b:P314L,ORF3a:L52F,ORF3a:Q57H,ORF3a:W193L,S:D614G 1340 B.1.501 -13.6512 -42.0029 1.05169 1.04698 1.05642 4.11359e-19 2107.41 2020-06-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G 1341 B.1.435 -7.32551 -12.9245 1.04981 1.04057 1.05913 7.35889e-21 6033.69 2020-04-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:N2603D,ORF1a:T1567I,ORF1b:P314L,S:D614G 1342 B.1.582 -4.65513 -5.79078 1.04962 1.03505 1.0644 2.62424e-15 451014 2020-06-10 M:A63T,M:H125Y,N:G204R,N:I157V,N:R203K,ORF14:G50N,ORF14:S4L,ORF1a:A3209V,ORF1a:A591V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:G519S,ORF1a:H1160Y,ORF1a:N2405S,ORF1a:P1640L,ORF1a:S3675T,ORF1b:A1643V,ORF1b:P314L,ORF1b:S425A,ORF3a:N257Y,ORF3a:V256G,S:D1139H,S:D614G,S:D80G,S:E484K,S:I1130V,S:N439K,S:P681H,S:T95I,S:Y144V 1343 B.1.363 -18.5288 -76.2185 1.04926 1.04554 1.05299 3.70924e-21 50649.1 2020-09-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF8:Q27STOP,S:D614G 1344 B.1.581 -17.6684 -69.435 1.04864 1.04467 1.05262 3.17444e-21 3492.39 2020-06-23 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:T95I 1345 B.1.612 -34.3623 -258.336 1.04842 1.04637 1.05048 3.42526e-21 1363.99 2020-07-12 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1a:V1887I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:A701V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1346 B.1.293 -15.6412 -54.7193 1.04679 1.04209 1.05151 1.45854e-20 3896.73 2020-06-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1347 B.1.571 -12.4566 -35.1914 1.04515 1.03901 1.05133 1.0821e-21 10866.7 2020-06-20 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T2432I,S:D614G 1348 B.1.503 -6.7761 -11.2095 1.04505 1.03375 1.05647 4.30711e-17 207940 2020-04-17 N:G204R,N:Q9H,N:R203K,ORF14:G50N,ORF14:L9P,ORF1a:G3334S,ORF1a:H2357Y,ORF1a:P3395L,ORF1a:S944L,ORF1b:A2268V,ORF1b:M2322I,ORF1b:P314L,ORF1b:T2084I,ORF3a:Y156C,ORF7a:T14I,ORF9b:S6T,S:D614G,S:N501Y 1349 B.1.369 -6.70651 -11.0014 1.04264 1.03056 1.05487 2.39417e-15 2.65489e+06 2020-03-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 1350 B.1.1.48 -2.36117 -2.03657 1.04162 1.00688 1.07756 0.809264 374592 2020-03-01 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1351 A.12 -16.5698 -61.2393 1.04149 1.03645 1.04655 6.50254e-22 10658.1 2020-04-10 1352 B.1.564.1 -9.05288 -19.1572 1.04104 1.03174 1.05042 9.8353e-18 17233.4 2020-09-04 N:G204R,N:R203K,ORF14:G50N,ORF1b:I2303V,ORF1b:P314L,S:D614G,S:L452R,S:T22I 1353 B.1.448 -10.8024 -26.7755 1.041 1.03319 1.04886 1.169e-17 288834 2020-07-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1306S,ORF1a:E1687D,ORF1a:P1810L,ORF1a:S2103F,ORF1b:P314L,S:D614G,S:M153I,S:S691A 1354 B.1.325 -18.7966 -78.3949 1.04006 1.03548 1.04466 3.59239e-20 3651.55 2020-06-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:L3930F,ORF1a:V3718F,ORF1b:P314L,ORF3a:G224R,S:D614G,S:V1176F 1355 B -0.553792 -0.389154 1.03906 0.891356 1.21125 30286.3 1.22003e+07 2019-12-30 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:L3711F,ORF1b:P314L,S:A222V,S:D614G,S:L18F 1356 B.1.590 -17.0348 -64.6447 1.03875 1.03355 1.04397 1.61703e-23 2108.37 2020-05-20 M:I82T,N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:D953N,ORF1a:E1196V,ORF1a:K2511N,ORF1a:L2122F,ORF1a:T2936I,ORF1a:T3284I,ORF1b:A2513S,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 1357 B.1.594 -18.286 -74.2718 1.03869 1.03384 1.04357 3.82442e-24 720.272 2020-06-09 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:E1196V,ORF1a:K2511N,ORF1a:L27F,ORF1a:T2936I,ORF1a:T3284I,ORF1b:D490N,ORF1b:P314L,ORF1b:V2371M,ORF7a:F6S,ORF8:E106STOP,S:A899S,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 1358 B.1.425 -9.53144 -21.1104 1.0386 1.02929 1.04799 1.12936e-18 22892.5 2020-05-16 M:W31C,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1359 B.1.592 -13.0044 -38.2382 1.03845 1.03159 1.04534 2.05348e-26 483.215 2020-04-02 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:K2511N,ORF1a:Q998H,ORF1a:T2936I,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 1360 B.1.284 -11.432 -29.8394 1.03841 1.03062 1.04627 8.61424e-27 739.118 2020-04-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1679V,ORF1b:P314L,S:D614G 1361 B.1.298 -6.29685 -9.8185 1.0383 1.02415 1.05264 4.9296e-17 46230.1 2020-07-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:L969F,ORF1a:S2024L,ORF1b:P314L,ORF7a:Q94STOP,S:D614G 1362 B.1.370 -11.6892 -31.1404 1.03824 1.03059 1.04595 1.5708e-20 3282.17 2020-03-29 N:G204R,N:G214C,N:P13L,N:R203K,ORF14:G50N,ORF14:M60I,ORF1a:F2387V,ORF1a:G3278S,ORF1a:L3201P,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:D614G,S:F490S,S:G75V,S:L452Q,S:T76I,S:T859N 1363 B.1.450 -8.13351 -15.6809 1.03821 1.02722 1.04931 1.30318e-21 1680.93 2020-03-18 M:V70F,N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1364 B.1.424 -6.46562 -10.2972 1.03816 1.02435 1.05216 3.91322e-25 1333.37 2020-04-06 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V1811F,S:D614G 1365 B.1.336 -10.6196 -25.9179 1.03815 1.02972 1.04666 1.53066e-18 84942.7 2020-03-26 N:G204R,N:R203K,ORF14:G50N,ORF1a:P2046S,ORF1a:S771C,ORF1a:T1637I,ORF1b:P314L,S:D614G 1366 B.1.301 -6.43041 -10.1963 1.03804 1.02412 1.05216 2.99874e-23 26638.1 2020-04-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:S3884L,ORF1b:P314L,S:D614G 1367 B.1.499 -4.86922 -6.25165 1.03786 1.01945 1.05661 7.24911e-08 2.06994e+07 2020-04-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G 1368 B.1.569 -17.4039 -67.4143 1.03716 1.0319 1.04245 4.66247e-19 15368.3 2020-09-30 N:D371V,N:G204R,N:R203K,ORF14:G50N,ORF1a:Q2702H,ORF1a:V3718F,ORF1b:P314L,S:D614G 1369 B.1.597 -5.38205 -7.4339 1.0371 1.02017 1.05432 6.11234e-14 409295 2020-07-09 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G446S,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1370 B.1.334 -10.7714 -26.6291 1.0371 1.0286 1.04566 1.07828e-18 4498.42 2020-04-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:I114T,ORF1b:P314L,S:D614G,S:T859I,S:V3G 1371 B.1.337 -9.34324 -20.3306 1.03707 1.02728 1.04696 3.3015e-17 41788.5 2020-08-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2529V,ORF1b:P314L,S:D614G,S:I870V 1372 B.1.324 -5.79945 -8.478 1.03694 1.02116 1.05296 1.16923e-15 529813 2020-05-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:L3930F,ORF1a:P2260S,ORF1a:P271L,ORF1a:T3255I,ORF1a:V757F,ORF1b:P314L,ORF1b:R2613H,ORF1b:T216A,S:D614G,S:Q675H,S:Q677H,S:V1176F 1373 B.1.509 -7.37831 -13.0961 1.0369 1.02446 1.04948 9.44889e-17 444937 2020-06-19 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V1116I,S:D614G 1374 B.1.306 -12.1582 -33.5862 1.03678 1.0292 1.04442 1.93609e-18 11070.5 2020-06-19 N:G204R,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1b:P314L,S:D614G 1375 B.1.570 -17.4834 -68.0187 1.03677 1.03149 1.04208 8.44577e-18 400843 2020-07-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:M2194I,ORF1a:Q607H,ORF1b:P314L,ORF1b:T797I,S:D614G 1376 B.1.499.1 -20.4846 -92.8308 1.03669 1.03218 1.04123 2.14564e-21 530.828 2020-11-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G,S:T549A 1377 B.1.574 -14.0452 -44.3851 1.03644 1.02983 1.04309 2.22905e-19 60459.2 2020-06-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1146V,ORF1b:P314L,ORF3a:T223I,S:D614G 1378 B.1.520 -17.17 -65.652 1.03637 1.03095 1.04182 2.72483e-18 29330 2020-06-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:H110Y,ORF1b:P314L,S:D614G 1379 B.1.578 -18.622 -76.9723 1.03637 1.03137 1.04139 5.87421e-20 7567.76 2020-04-24 N:G204R,N:R203K,ORF14:G50N,ORF1b:P2256S,ORF1b:P314L,S:D614G 1380 B.1.326 -26.5648 -155.062 1.03628 1.03277 1.03981 7.32363e-24 1099.97 2020-06-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:D729Y,ORF1b:P314L,S:A626S,S:D614G 1381 B.1.168 -12.2639 -34.1504 1.03628 1.02869 1.04393 1.82557e-29 551.839 2020-04-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3618V,ORF1a:P959S,ORF1a:T3255I,ORF1a:T4175I,ORF1b:P314L,S:D614G,S:P681H,S:T478K,S:T732A 1382 B.1.289 -11.0769 -28.0906 1.03628 1.02788 1.04475 2.98101e-24 1798.88 2020-04-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:K2511N,ORF1b:P314L,ORF3a:A143T,S:D614G 1383 B.1.486 -42.0734 -386.411 1.03622 1.03399 1.03844 2.03473e-23 521.233 2020-04-28 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:G100C,S:A892S,S:D614G,S:T73I 1384 B.1.452 -19.4845 -84.1289 1.03621 1.03142 1.04103 1.42658e-20 4996.1 2020-05-18 N:G204R,N:R203K,ORF14:G50N,ORF1a:T2016K,ORF1b:P314L,S:D614G 1385 B.1.573 -12.4239 -35.0136 1.0362 1.0287 1.04376 2.13446e-27 2655.58 2020-07-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:E2274G,ORF1b:P314L,S:D614G 1386 B.1.576 -9.6327 -21.5363 1.0362 1.02653 1.04596 1.15704e-17 76344.8 2020-06-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:T4087I,ORF1a:V3660M,ORF1b:P314L,S:D614G 1387 B.1.294 -22.8272 -114.909 1.0362 1.03211 1.04031 2.54359e-22 507.781 2020-06-22 N:G204R,N:R203K,ORF14:G50N,ORF1b:D2361Y,ORF1b:P314L,S:D614G 1388 B.1.316 -25.6135 -144.268 1.0362 1.03255 1.03986 1.01302e-25 515.784 2020-05-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:D1554G,ORF1a:D3681E,ORF1a:L3201P,ORF1a:L3930F,ORF1b:A1291V,ORF1b:L1203F,ORF1b:P314L,ORF8:K2Q,S:D614G,S:E1092K,S:E484K,S:H1101Y,S:N501Y,S:P681H,S:V1176F 1389 B.1.287 -24.6229 -133.444 1.0362 1.0324 1.04001 1.05531e-21 19739.6 2020-06-15 N:G204R,N:R203K,ORF14:G50N,ORF1b:K2307R,ORF1b:P314L,ORF1b:T1774I,S:D614G,S:E154Q 1390 B.1.291 -20.2504 -90.7536 1.03618 1.03157 1.04082 1.23798e-16 214043 2020-06-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:T265I,ORF1a:T3058I,ORF1b:P314L,S:D614G 1391 B.1.335 -19.8967 -87.6628 1.03617 1.03148 1.04089 5.77741e-20 11137 2020-05-21 N:G204R,N:R203K,ORF14:G50N,ORF1b:D2179A,ORF1b:P314L,S:D614G,S:L841F,S:T859I,S:V3G 1392 B.1.511 -19.6146 -85.236 1.03617 1.03141 1.04096 1.69129e-22 778.043 2020-05-13 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1393 B.1.598 -16.8902 -63.576 1.03617 1.03064 1.04173 1.07939e-24 519.331 2020-04-19 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:H655Y,S:K417N,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1394 B.1.487 -25.9231 -147.737 1.03616 1.03256 1.03978 3.90838e-24 918.412 2020-06-08 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:T2336I,S:D614G 1395 B.1.445 -17.5729 -68.7018 1.03616 1.03084 1.0415 7.72857e-21 2246.24 2020-06-19 N:G204R,N:R203K,ORF14:G50N,ORF1b:M657I,ORF1b:P314L,ORF9b:A57V,S:D614G 1396 B.1.329 -13.1564 -39.1067 1.03615 1.02906 1.0433 5.4878e-24 789639 2020-05-20 N:G204R,N:R203K,ORF14:G50N,ORF1b:P1095S,ORF1b:P314L,ORF3a:R30H,S:D614G 1397 B.1.453 -17.026 -64.5791 1.03615 1.03066 1.04167 9.35079e-20 86807.4 2020-04-28 N:G204R,N:P6L,N:R203K,ORF14:G50N,ORF1a:D2980A,ORF1a:K2200N,ORF1a:T2952I,ORF1b:P314L,ORF9b:P3S,S:D614G 1398 B.1.515 -10.3808 -24.8192 1.03615 1.02716 1.04521 1.3471e-27 1694.62 2020-04-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:N869S,ORF1b:D1869Y,ORF1b:P1177L,ORF1b:P314L,ORF1b:S1273L,S:D614G,S:D80Y 1399 B.1.485 -14.5693 -47.6572 1.03615 1.02974 1.0426 3.11389e-23 2430.8 2020-04-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2123V,ORF1a:F1779L,ORF1a:L3899I,ORF1a:S1520F,ORF1a:T727I,ORF1b:P314L,ORF3a:M125I,S:A1078T,S:D614G 1400 B.1.267 -21.5412 -102.494 1.03614 1.0318 1.0405 6.67989e-21 143048 2020-03-28 N:G204R,N:R203K,ORF14:G50N,ORF1a:H110Y,ORF1a:Q3729K,ORF1b:P314L,ORF3a:D173G,ORF3a:F28L,ORF6:I37T,ORF7a:G42D,ORF8:D119Y,S:D138N,S:D614G,S:P681H 1401 B.1.451 -26.0187 -148.818 1.03614 1.03255 1.03975 2.10415e-20 6314.9 2020-07-08 M:V70F,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3571V,ORF1b:P314L,S:D614G,S:P681H 1402 B.1.304 -17.2283 -66.0892 1.03614 1.03072 1.04159 1.68879e-22 1364.08 2020-06-12 N:G204R,N:R203K,ORF14:G50N,ORF1b:G1129V,ORF1b:P314L,S:D614G 1403 B.1.40 -9.63044 -21.5267 1.03614 1.02645 1.04592 2.00896e-31 533.232 2020-03-31 N:G204R,N:R203K,ORF14:G50N,ORF1a:A3995V,ORF1a:D1036E,ORF1a:G519S,ORF1b:P314L,ORF8:Q29R,S:D614G 1404 B.1.432 -25.9034 -147.516 1.03614 1.03252 1.03976 2.10798e-24 774.123 2020-06-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:K120N,ORF1b:P314L,ORF1b:V1092F,S:D614G 1405 B.1.120 -11.83 -31.8648 1.03614 1.02824 1.04409 0 477.384 2020-04-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1406 B.1.518 -12.5049 -35.4549 1.03613 1.02866 1.04365 4.80088e-24 11098.3 2020-04-29 M:K15N,N:G204R,N:R203K,ORF14:C5F,ORF14:G50N,ORF1a:A2785V,ORF1b:A2268S,ORF1b:P314L,ORF8:D35Y,ORF8:G8STOP,S:D614G,S:L938F 1407 B.1.341 -13.1692 -39.1806 1.03612 1.02903 1.04327 1.45633e-26 637.112 2020-04-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3072C,ORF1a:P1786S,ORF1a:T999I,ORF1b:E2274A,ORF1b:P314L,S:D614G 1408 B.1.564 -20.1595 -89.9544 1.03612 1.03148 1.04078 4.32675e-17 2654.34 2020-04-05 N:G204R,N:Q229H,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1409 B.1.360 -9.65811 -21.6438 1.03612 1.02645 1.04587 6.22067e-22 3143.78 2020-03-22 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 1410 B.1.348 -28.7355 -181.163 1.03611 1.03286 1.03938 3.55994e-21 1142.17 2020-11-06 N:G204R,N:R203K,ORF14:G50N,ORF1b:A1643S,ORF1b:K2579N,ORF1b:P314L,S:D614G 1411 B.1.492 -7.45432 -13.3452 1.03611 1.02361 1.04877 1.78554e-22 94409.1 2020-04-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:M315I,ORF1a:M3934I,ORF1b:P314L,S:D614G 1412 B.1.366 -11.8407 -31.9199 1.03609 1.02819 1.04404 1.05192e-17 55766.1 2020-05-13 M:I82T,N:A211V,N:E378Q,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:E2946D,ORF1a:G3278S,ORF1a:H1500Y,ORF1a:K1348Q,ORF1a:R2115I,ORF1a:T1246I,ORF1a:T3646A,ORF1a:V3718F,ORF1b:A2132V,ORF1b:P314L,ORF8:T11K,ORF9b:P10S,S:D614G,S:D796Y,S:E484K,S:W64R 1413 B.1.310 -21.4687 -101.816 1.03607 1.03171 1.04045 8.3263e-22 16449.6 2020-04-03 E:S68F,N:G204R,N:R203K,N:T205I,ORF14:G50N,ORF14:L52F,ORF1b:P314L,S:D614G 1414 B.1.340 -13.2224 -39.4871 1.03606 1.02899 1.04319 3.7157e-19 40307.4 2020-07-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:H388Y,ORF1b:P314L,S:D614G 1415 B.1.572 -13.7169 -42.3959 1.03606 1.02924 1.04293 6.66313e-19 10381.6 2020-04-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:K1763N,ORF1b:P314L,ORF9b:R13L,S:D614G 1416 B.1.437 -28.9502 -183.855 1.03606 1.03282 1.0393 1.24819e-21 1121.32 2020-06-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:I1203T,ORF1a:N2603D,ORF1b:P314L,S:D614G 1417 B.1.357 -12.3626 -34.6813 1.03605 1.02849 1.04367 2.34504e-22 243749 2020-06-12 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1b:P314L,S:D614G 1418 B.1.579 -11.5782 -30.5753 1.03605 1.02798 1.04419 9.91305e-25 3498.41 2020-04-27 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:N501Y 1419 B.1.354 -9.00988 -18.9866 1.03605 1.02568 1.04652 1.06228e-20 6758.78 2020-04-02 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1420 B.1.117 -6.66775 -10.8865 1.03603 1.02204 1.05021 0 477.566 2020-04-07 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1421 B.1.593 -29.2127 -187.175 1.03602 1.0328 1.03924 1.73273e-20 12430.5 2020-09-15 M:I82T,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3209V,ORF1a:F3677L,ORF1a:G3676S,ORF1a:K2511N,ORF1a:T2936I,ORF1a:V2522L,ORF1b:P1368S,ORF1b:P314L,ORF1b:V2371M,ORF8:E106STOP,S:D614G,S:D796H,S:E484K,S:P681H,S:T95I 1422 B.1.355 -21.1467 -98.83 1.03601 1.03157 1.04046 5.25413e-21 4608.99 2020-06-21 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1423 B.1.38 -8.25181 -16.1079 1.03601 1.02468 1.04745 6.63213e-24 5078.01 2020-03-23 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,ORF1b:V2089F,S:D614G 1424 B.1.496 -28.6735 -180.388 1.036 1.03273 1.03929 1.5081e-23 506.287 2020-05-22 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G 1425 B.1.115 -12.4659 -35.2419 1.036 1.02849 1.04357 6.695 112630 2020-03-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1426 B.1.330 -14.3344 -46.1756 1.03599 1.02946 1.04257 2.00414e-25 512.704 2020-03-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:M598K,ORF1b:P314L,S:D614G 1427 B.1.167 -7.57017 -13.7296 1.03599 1.02365 1.04848 8.19451e-29 565.86 2020-04-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3618V,ORF1a:P959S,ORF1a:T3255I,ORF1b:P314L,S:D614G,S:P681H,S:T478K,S:T732A 1428 B.1.268 -7.69962 -14.166 1.03597 1.02384 1.04826 4.80069e-22 1542.79 2020-04-01 N:G204R,N:P365L,N:R203K,ORF10:R24C,ORF14:G50N,ORF1b:P314L,ORF1b:R2308C,ORF3a:D173G,S:D614G,S:P681H 1429 B.1.338 -17.3736 -67.1847 1.03597 1.03057 1.0414 4.22621e-25 569.301 2020-05-02 N:G204R,N:R203K,ORF14:G50N,ORF1a:H388Y,ORF1b:P314L,S:D614G 1430 B.1.166 -8.90053 -18.5561 1.03595 1.02544 1.04657 2.50803e-23 2005.84 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1a:P959S,ORF1b:P314L,S:D614G,S:T732A 1431 B.1.315 -8.78077 -18.0905 1.03594 1.02528 1.04671 6.48921e-21 82070.2 2020-04-17 N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:D1639N,ORF1a:D3222N,ORF1b:P314L,ORF3a:G172C,ORF9b:P10S,S:D614G,S:E484Q,S:N501T,S:T95I,S:V1176F 1432 B.1.344 -6.84083 -11.4049 1.03593 1.02227 1.04978 3.23746e-22 66472 2020-04-01 N:A182S,N:A398V,N:G204R,N:R203K,ORF14:G50N,ORF14:K28N,ORF1a:E743D,ORF1a:K680N,ORF1a:T4249I,ORF1b:F1960L,ORF1b:P314L,ORF3a:G174C,ORF3a:S40P,S:D614G 1433 B.1.500 -36.3428 -288.767 1.03587 1.03328 1.03847 2.37199e-21 870.145 2020-09-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G 1434 B.1.333 -8.45554 -16.8573 1.03587 1.02479 1.04707 3.73544e-22 1846.64 2020-03-25 N:G204R,N:P67S,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:V1691L,ORF3a:W45L,S:A352S,S:D614G,S:V3G 1435 B.1.323 -9.35391 -20.3744 1.03585 1.02583 1.04598 1.48794e-21 2867.51 2020-03-17 N:A119S,N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:L3468V,ORF1a:L3930F,ORF1b:P314L,S:D614G,S:E484K,S:V1176F 1436 B.1.3 -10.3108 -24.5019 1.03585 1.02675 1.04503 4.27256e-18 42028.5 2020-04-29 N:G204R,N:R203K,N:S37P,ORF14:G50N,ORF1a:A656V,ORF1b:P314L,S:D614G 1437 B.1.321 -8.09432 -15.5407 1.03585 1.02427 1.04756 7.12753e-20 17822.2 2020-03-20 N:A119S,N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1a:L3468V,ORF1a:L3930F,ORF1b:P314L,S:D614G,S:E484K,S:V1176F 1438 B.1.510 -9.91096 -22.7293 1.03584 1.02637 1.0454 13.2929 21761.5 2020-03-01 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF6:W27L,S:D614G 1439 B.1.488 -23.8875 -125.685 1.03582 1.03188 1.03978 3.09172e-21 108797 2020-07-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1074D,ORF1b:P314L,S:D614G,S:S940F 1440 B.1.613 -7.31997 -12.9065 1.03581 1.02301 1.04878 1.00602e-23 1201.26 2020-04-20 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1a:V1887I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:A701V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1441 B.1.513 -10.1292 -23.6883 1.03579 1.02652 1.04515 0.784688 11238.8 2020-03-14 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF1b:S1779I,S:D614G 1442 B.1.118 -5.53925 -7.81848 1.03578 1.01888 1.05296 6.7465e-25 29198.9 2020-03-25 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E1223A,ORF1a:F3677L,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1443 B.1.490 -21.5337 -102.425 1.03575 1.03137 1.04014 1.96607e-24 525.38 2020-04-21 N:D377Y,N:G204R,N:R203K,ORF14:G50N,ORF1a:I1232V,ORF1a:P1158S,ORF1b:P314L,ORF3a:W131C,S:D614G 1444 B.1.607 -8.44581 -16.8211 1.03572 1.02459 1.04697 0 479.195 2020-04-09 E:T9I,M:A63T,M:D3G,M:Q19E,N:D343G,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:L106F,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1445 B.1.489 -10.6083 -25.8655 1.03569 1.02682 1.04464 1.64967e-32 479.364 2020-03-30 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1446 B.1.497 -13.2489 -39.6404 1.03568 1.02857 1.04285 3.52022e-11 2.82709e+06 2020-05-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G 1447 B.1.358 -7.41151 -13.2046 1.03566 1.02297 1.0485 3.38078e-23 872.02 2020-04-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 1448 B.1.264 -6.09855 -9.27151 1.03566 1.02026 1.05129 1.41907e-22 7693.43 2020-03-24 N:G204R,N:M234I,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:H78Y,ORF3a:S58N,ORF6:I14T,S:D614G,S:D936N,S:Q677H,S:T29I,S:T572I 1449 B.1.422 -6.94504 -11.7231 1.03563 1.02209 1.04935 1.93181e-20 21204.6 2020-03-01 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1b:P314L,ORF6:I33T,S:D614G 1450 B.1.302 -10.0303 -23.2513 1.03559 1.02619 1.04508 3.51335e-22 1620.03 2020-03-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1074V,ORF1a:G493D,ORF1b:P314L,ORF3a:D27Y,S:D614G 1451 B.1.516 -17.3239 -66.8091 1.03558 1.03012 1.04106 2.18144e-20 5740.77 2020-05-14 M:A2V,N:G204R,N:R203K,ORF14:G50N,ORF1a:A3357V,ORF1a:T727I,ORF1b:P314L,S:D614G,S:E1202Q 1452 B.1.491 -9.27205 -20.0395 1.03557 1.0254 1.04584 0 479.822 2020-04-30 N:G204R,N:R203K,ORF14:G50N,ORF1a:I785V,ORF1b:P314L,S:D614G 1453 B.1.108 -7.31565 -12.8926 1.03557 1.02269 1.0486 5.00654e-21 14269.9 2020-03-19 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F2780L,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF3a:L15F,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1454 B.1.343 -4.60126 -5.67784 1.03556 1.01517 1.05637 5.25337e-15 31120.1 2020-03-09 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,ORF3a:G174C,S:D614G 1455 B.1.314 -5.84918 -8.60731 1.03555 1.01947 1.05189 7.02363e-20 28269.8 2020-03-14 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D111N,S:D614G 1456 B.1.350 -5.88853 -8.71037 1.03553 1.01954 1.05176 1.54592e-19 5105.72 2020-03-01 N:G204R,N:R203K,ORF10:T12M,ORF14:G50N,ORF1b:P314L,ORF1b:S769N,S:D614G,S:M153T 1457 B.1.506 -25.6711 -144.911 1.03546 1.03177 1.03917 7.55606e-21 23555.5 2020-06-04 N:G204R,N:R203K,ORF14:G50N,ORF1a:A1049V,ORF1a:R184C,ORF1b:P314L,ORF3a:L15F,S:D614G 1458 B.1.508 -22.9224 -115.857 1.03545 1.03131 1.0396 2.36537e-25 947.72 2020-05-13 M:L16I,N:G204R,N:R203K,ORF14:G50N,ORF1a:Q3729R,ORF1a:S376L,ORF1a:S4119T,ORF1a:T1093A,ORF1a:T2247N,ORF1a:T3255I,ORF1a:V1006F,ORF1b:A2431V,ORF1b:P314L,ORF1b:T1173N,ORF1b:V1905L,ORF3a:L95M,S:D614G,S:E484K,S:E780K,S:H245P,S:P9L 1459 B.1.611 -28.8599 -182.72 1.03542 1.03214 1.03872 9.9903e-23 569.208 2020-07-01 E:T9I,M:A63T,M:D3G,M:Q19E,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P1803S,ORF1a:P3395H,ORF1a:T3255I,ORF1a:V1887I,ORF1b:I1566V,ORF1b:P314L,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1460 B.1.495 -13.9736 -43.9469 1.03541 1.02863 1.04223 5.11431e-21 2175.02 2020-05-06 N:G204R,N:R203K,ORF14:G50N,ORF1a:P971L,ORF1b:P314L,S:D614G 1461 B.1.502 -30.3952 -202.498 1.0354 1.03227 1.03853 2.20984e-23 721.013 2020-06-11 N:G204R,N:R203K,ORF14:G50N,ORF14:L9P,ORF1a:G3334S,ORF1b:P314L,ORF1b:T2084I,S:D614G 1462 B.1.494 -11.3051 -29.2085 1.0354 1.02702 1.04384 3.16277e-12 3614.65 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1a:K399R,ORF1a:T1822I,ORF1b:M2025I,ORF1b:P314L,S:D614G 1463 B.1.493 -14.614 -47.942 1.03536 1.02887 1.0419 6.20676e-20 1600.02 2020-04-07 N:G204R,N:R203K,ORF14:G50N,ORF1a:M315I,ORF1a:M3934I,ORF1b:P314L,ORF1b:T67I,ORF7b:H37L,S:D614G 1464 B.1.309 -25.9264 -147.775 1.03535 1.03169 1.03903 6.36269e-22 763.11 2020-06-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:P3371S,ORF1b:P314L,S:D614G 1465 B.1.372 -5.91921 -8.79116 1.03531 1.01935 1.05153 1.11151e-20 31899 2020-07-27 N:G204R,N:G214C,N:P13L,N:R203K,ORF14:G50N,ORF14:M60I,ORF1a:F2387V,ORF1a:G3278S,ORF1a:L3201P,ORF1a:P2287S,ORF1a:T1246I,ORF1a:T3255I,ORF1b:P314L,ORF9b:P10S,S:D614G,S:F490S,S:G75V,S:L452Q,S:T76I,S:T859N 1466 B.1.39 -3.58803 -3.77827 1.0353 1.00908 1.0622 1.44992e-13 14776.8 2020-03-15 N:G204R,N:R203K,ORF14:G50N,ORF1a:Q455H,ORF1b:P314L,ORF7a:L96F,S:D614G 1467 B.1.505 -13.0215 -38.3354 1.0353 1.02801 1.04264 6.08385e-19 25173.3 2020-07-05 N:G204R,N:R203K,ORF14:G50N,ORF1a:I3341V,ORF1a:S2625F,ORF1b:P314L,S:D614G,S:N185S 1468 B.1.498 -12.5535 -35.7209 1.03528 1.02772 1.0429 1.16604e-20 2835.23 2020-05-27 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:D614G 1469 B.1.504 -20.2206 -90.4912 1.03527 1.03056 1.03999 1.75277e-13 53374 2020-04-25 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3334S,ORF1b:P314L,S:A1078S,S:D614G,S:I1232F 1470 B.1.12 -5.88529 -8.70184 1.03521 1.01912 1.05156 1.84989e-20 23181 2020-03-14 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:E1223A,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:L3829F,ORF1a:T1001I,ORF1a:W646R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1471 B.1.359 -12.4913 -35.3803 1.03519 1.02757 1.04286 1.39742e-21 762.305 2020-03-21 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1a:T1246I,ORF1b:P314L,S:D614G 1472 B.1.320 -4.19404 -4.86323 1.03516 1.01263 1.05819 3.04844e-16 86332.2 2020-03-12 N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:L3930F,ORF1b:P314L,ORF3a:T151I,ORF9b:P10S,S:D614G,S:V1176F 1473 B.1.507 -9.0775 -19.2553 1.03505 1.02456 1.04565 3.64694e-21 7619.02 2020-03-18 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1474 B.1.319 -4.67086 -5.824 1.03504 1.01474 1.05575 1.68489e-17 247373 2020-03-10 N:G204R,N:R203K,ORF14:G50N,ORF1a:L3930F,ORF1b:P314L,S:D614G,S:V1176F 1475 B.1.428 -3.21389 -3.18364 1.03488 1.00542 1.06521 1.84897e-13 1.86145e+06 2020-03-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:V1211F,ORF1b:P314L,S:D614G 1476 B.1.413 -4.36235 -5.19154 1.03478 1.01295 1.05708 2.75711e-17 52615.9 2020-03-13 N:G204R,N:I292T,N:R203K,ORF14:G50N,ORF1a:K737R,ORF1b:P314L,ORF6:I33T,S:D614G 1477 B.1.468 -7.70569 -14.1866 1.03468 1.02224 1.04727 6.68949e-13 1.99211e+06 2020-09-24 N:G204R,N:R203K,ORF14:G50N,ORF1a:L360S,ORF1b:A2132V,ORF1b:A647S,ORF1b:P314L,ORF1b:T2165A,S:D614G 1478 B.1.332 -4.50836 -5.48591 1.0346 1.0134 1.05625 4.2156e-11 54394.3 2020-03-14 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G,S:V3G 1479 B.1.356 -3.83556 -4.20313 1.0338 1.00854 1.05969 3.74335e-14 460169 2020-03-01 N:G204R,N:R203K,ORF14:G50N,ORF1a:G3278S,ORF1b:P314L,S:D614G 1480 A.11 -15.9386 -56.7672 1.02942 1.02278 1.03611 2.16762e-06 132443 2020-03-25 N:S202N,ORF14:V49I,ORF1a:D2980G,ORF1a:N3651S,ORF1a:P286L,ORF1b:P1000L,ORF3a:V50A,ORF8:L84S,S:A653V,S:D796Y,S:G1219V,S:H655Y,S:L18F,S:L452R,S:N501Y 1481 A.9 -14.71 -48.5562 1.02942 1.02223 1.03667 4.95739e-21 1660.26 2020-04-01 ORF1a:M1769I,ORF3a:G251V 1482 A.22 -17.5129 -68.2435 1.02939 1.02334 1.03548 6.17805e-06 4718.49 2020-03-15 ORF1a:H3233Y,ORF3a:G251V,S:L8V 1483 A.4 -8.09625 -15.5476 1.02912 1.01601 1.04239 2.12073e-23 723.265 2020-03-19 N:T205I,ORF14:L52F,ORF1a:N2405S,ORF3a:G251V 1484 B.1.1.41 -8.84886 -18.3545 1.02552 1.01278 1.03842 7.92718e-24 536.097 2020-03-31 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1485 B.1.263 -10.6233 -25.9352 1.02496 1.01424 1.0358 3.26753e-23 1740.79 2020-03-26 N:G204R,N:R203K,ORF14:G50N,ORF1b:M2667I,ORF1b:P314L,S:D614G 1486 B.1.369.1 -20.552 -93.4324 1.02444 1.01884 1.03007 1.13693e-17 41417.3 2020-12-31 N:G204R,N:G215V,N:R203K,ORF14:G50N,ORF14:V62L,ORF1a:A3209V,ORF1a:D935G,ORF1a:G3278S,ORF1a:K3573E,ORF1a:T1246I,ORF1b:P1000L,ORF1b:P314L,S:D215H,S:D614G,S:L452R,S:S640F,S:T859N 1487 A.19 -11.9397 -32.4347 1.02391 1.01421 1.03371 0.00581791 877677 2020-06-20 ORF1a:P2144L,ORF1a:T3579I 1488 A.18 -14.657 -48.2161 1.02386 1.01594 1.03184 7.64388e-05 119874 2020-07-22 1489 B.6.8 -17.9021 -71.2457 1.01232 1.00466 1.02004 8.96904e-17 51287.6 2020-07-21 ORF1a:T265I,ORF1b:P314F,ORF3a:Q57H,S:D614G 1490 B.6.4 -26.8257 -158.091 1.01217 1.00704 1.01733 6.21274e-22 3203.13 2020-06-30 ORF1a:L3201F,ORF1a:T265I,ORF1b:E427G,ORF1b:P314L,ORF1b:S2430R,ORF3a:Q57H,S:D614G 1491 B.6.2 -26.3604 -152.71 1.01217 1.00695 1.01741 2.71838e-20 18137 2020-05-23 ORF1a:T265I,ORF1b:P314L,ORF1b:S2430R,ORF3a:Q57H,ORF3a:W131L,S:D614G 1492 B.6.5 -21.7167 -104.146 1.01214 1.0058 1.01851 6.51981e-28 671.689 2020-03-19 N:T205I,ORF14:L52F,ORF1a:T265I,ORF1b:L1099F,ORF1b:P314L,ORF1b:T2432I,ORF3a:Q57H,S:D614G 1493 B.6.1 -21.7853 -104.796 1.01212 1.0058 1.01847 2.54773e-20 90774.7 2020-03-21 ORF1a:M585V,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 1494 B.6.3 -22.6469 -113.126 1.01207 1.00598 1.01819 3.86411e-23 1110.21 2020-03-15 ORF1a:I3512T,ORF1a:T265I,ORF1b:E427G,ORF1b:P314L,ORF1b:S2430R,ORF3a:Q57H,S:D614G 1495 B.6.6 -11.1461 -28.4271 1.01165 0.99926 1.02419 9.58271e-19 283248 2020-03-18 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 1496 B.1.318 -32.5272 -231.657 1.01163 1.00736 1.01591 3.55168e-22 987.357 2020-07-07 N:A220V,N:G204R,N:R203K,ORF14:G50N,ORF14:L67F,ORF1a:A3143V,ORF1a:A516T,ORF1a:L3201P,ORF1a:L3915F,ORF1a:P971L,ORF1a:Q3729K,ORF1b:P314L,ORF1b:Y822C,ORF3a:L106F,ORF3a:V50I,S:D614G,S:I720V,S:L452R,S:V1176F 1497 B.1.44 -13.7963 -42.8724 1.0111 1.00101 1.02129 0 634.682 2020-04-01 N:G204R,N:P13S,N:R203K,ORF14:G50N,ORF1a:T4090I,ORF1b:P314L,ORF1b:R2257K,ORF1b:T76I,S:D614G 1498 A.17 -39.6753 -343.815 1.01052 1.00698 1.01408 5.92655e-23 8427.31 2020-03-05 1499 B.35 -10.5327 -25.5155 1.00511 0.990897 1.01953 2.61365e-05 81888.2 2020-03-19 ORF1b:P314L,ORF3a:Q57H,S:D614G 1500 B.1.606 -39.6949 -344.154 1.00231 0.998396 1.00625 2.35442e-21 3567.84 2020-06-11 E:T9I,M:A63T,M:D3G,M:Q19E,N:D343G,N:G204R,N:P13L,N:R203K,ORF14:G50N,ORF1a:A2710T,ORF1a:I3758V,ORF1a:K856R,ORF1a:P3395H,ORF1a:T3255I,ORF1b:I1566V,ORF1b:P314L,ORF3a:L106F,ORF9b:P10S,S:A67V,S:D614G,S:D796Y,S:E484A,S:G339D,S:G446S,S:G496S,S:H655Y,S:I1081V,S:K417N,S:L981F,S:N440K,S:N501Y,S:N679K,S:N764K,S:N856K,S:N969K,S:P681H,S:Q493R,S:Q498R,S:Q954H,S:S371L,S:S373P,S:S375F,S:S477N,S:T478K,S:T547K,S:T95I,S:Y505H 1501 A.16 -12.8466 -37.3472 1.00073 0.988447 1.01316 1.61314e-22 13524.5 2020-02-26 1502 A.6 -19.1349 -81.1897 1.00072 0.992457 1.00905 5.46383e-19 173987 2020-03-01 ORF10:Y14C,ORF3a:G251V 1503 A -1.6137 -1.24952 1 0.905594 1.10425 7.31806 7.45681e+06 2019-12-30 1504 B.6 -5.82681 -8.54902 0.999453 0.9722 1.02747 59.2276 1.30151e+07 2020-03-01 N:S194L,ORF14:Q41STOP,ORF1a:A3523V,ORF1a:G295C,ORF1a:N2498K,ORF1a:P2046L,ORF1a:P926S,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:A684V,S:D614G 1505 A.2.4 -17.156 -65.5472 0.999258 0.989897 1.00871 7.64361e-07 912571 2020-03-11 ORF1b:A2268V 1506 A.5 -6.56539 -10.5859 0.999176 0.974878 1.02408 3.46525e-12 282407 2020-03-03 ORF1a:E441G,ORF3a:G251V 1507 A.2.3 -10.5029 -25.3781 0.998695 0.983355 1.01427 0 876.671 2020-03-23 ORF1a:I4098V,ORF6:D53G 1508 A.2 -4.89164 -6.30104 0.994437 0.960283 1.02981 0.00924832 2.32264e+06 2020-02-28 ORF1b:A390V 1509 B.1.104 -15.3544 -52.7812 0.971349 0.957718 0.985174 1.00062e-23 2424.45 2020-03-22 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1510 B.4.1 -43.9004 -420.538 0.968363 0.963455 0.973295 1.0651e-21 17072 2020-04-26 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1511 B.4.7 -23.2519 -119.167 0.968123 0.958862 0.977475 6.13483e-08 77803.1 2020-03-01 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1512 B.4.5 -33.2228 -241.598 0.962067 0.955262 0.96892 1.75145e-32 1384.47 2020-03-24 N:S197L,ORF14:Q44STOP,ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1513 B.4.2 -40.6674 -361.134 0.960059 0.954412 0.965739 1.22554e-07 18714.4 2020-03-15 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1514 B.4.6 -24.964 -137.123 0.959888 0.950694 0.969171 8.99486e-09 3259.95 2020-03-04 N:S197L,ORF14:Q44STOP,ORF1a:L747F,ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,ORF7b:H42Y,ORF9b:R13L,S:A626S,S:D614G 1515 B.4.4 -21.2065 -99.3809 0.959615 0.94878 0.970574 1.18735e-24 26739.7 2020-03-14 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q185H,ORF3a:Q57H,S:D614G 1516 B.4 -8.44628 -16.8228 0.957931 0.930625 0.986038 0.900105 326193 2020-01-30 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1517 B.3.1 -11.5119 -30.2405 0.954584 0.933987 0.975636 4.4519e-25 1568.38 2020-03-12 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1518 B.3 -6.90815 -11.6099 0.952025 0.91734 0.988021 0.00327618 1.05164e+07 2020-02-27 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1519 B.1.431 -49.4345 -532.752 0.944971 0.939806 0.950165 1.96903e-31 1976.53 2020-04-03 N:G204R,N:R203K,ORF14:G50N,ORF1b:A1749V,ORF1b:P314L,S:D614G 1520 B.36 -147.097 -4701.08 0.930407 0.928502 0.932315 0.00105826 16625.9 2020-03-18 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 1521 B.44 -153.908 -5146.33 0.930286 0.928464 0.932111 2.42305e-27 2864.63 2020-03-17 ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1522 B.37 -94.5928 -1945.36 0.930206 0.927243 0.933179 2.05222e-25 2865.56 2020-03-15 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 1523 B.38 -63.3747 -874.342 0.930194 0.925775 0.934635 2.12658e-23 408694 2020-03-17 N:A35S,ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 1524 B.32 -53.7683 -629.908 0.930176 0.924968 0.935413 1.20577e-30 2853.4 2020-03-13 N:G204R,N:R203K,ORF14:G50N,ORF1a:L446F,ORF1a:M1378I,ORF1a:P2739L,ORF1a:P3767L,ORF1a:Y3063S,ORF1b:P314L,S:D614G,S:L452R,S:V1228L,S:Y1155F 1525 B.42 -36.2531 -287.352 0.930101 0.922384 0.937883 5.28985e-32 3400.45 2020-01-30 ORF1a:F3271Y,ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1526 B.43 -33.2937 -242.624 0.93007 0.921668 0.938548 1.09324e-31 3922.94 2020-02-08 ORF1a:K1655N,ORF1a:S3884L,ORF1a:S984I,ORF1a:T265I,ORF1a:V3718F,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1527 B.34 -25.1642 -139.307 0.929973 0.918867 0.941212 4.10669e-31 2908.73 2020-03-17 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1528 B.28 -19.7197 -86.1367 0.929909 0.915756 0.944282 2.26686e-16 13067.3 2020-03-09 N:G204R,N:R203K,ORF14:G50N,ORF1a:Q1592R,ORF1b:P314L,S:D614G 1529 B.30 -31.4328 -216.443 0.929887 0.920981 0.938879 3.62644e-25 7327.94 2020-03-16 N:G204R,N:R203K,ORF14:G50N,ORF1a:N3985H,ORF1a:P2046L,ORF1a:P2221S,ORF1b:P314L,S:D614G,S:M1237T 1530 B.41 -33.4716 -245.204 0.929737 0.921363 0.938186 4.37523e-25 58914.4 2020-02-19 ORF1a:S3884L,ORF1a:T265I,ORF1a:T3308I,ORF1b:A1844V,ORF1b:P314L,ORF3a:Q57H,S:D614G 1531 B.58 -22.5573 -112.245 0.929617 0.917211 0.942191 9.59571e-26 10788.4 2020-03-10 N:S194L,ORF14:Q41STOP,ORF1a:P2046L,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,S:D614G 1532 B.29 -15.5656 -54.2052 0.929455 0.911513 0.947749 1.04068e-19 9577.6 2020-03-03 N:G204R,N:R203K,N:T362I,ORF14:G50N,ORF1a:Q1592R,ORF1b:P314L,S:D614G 1533 B.31 -17.9596 -71.6949 0.929213 0.913621 0.945071 3.95449e-16 58466.5 2020-03-11 N:G204R,N:R203K,ORF14:G50N,ORF1b:P314L,S:D614G 1534 B.39 -14.0195 -44.2276 0.929034 0.909086 0.949419 5.03475e-22 41604.8 2020-03-05 ORF1a:S3884L,ORF1a:T265I,ORF1b:P314L,ORF3a:D210Y,ORF3a:Q57H,S:D614G 1535 B.33 -8.79668 -18.152 0.927353 0.895462 0.960381 0.00021105 352943 2020-02-29 N:G204R,N:R203K,ORF14:G50N,ORF1a:A2199V,ORF1b:P314L,ORF1b:S1881G,S:D614G,S:V1104L 1536 B.1.1.17 -58.2712 -739.494 0.917622 0.912463 0.92281 8.41543e-33 4069.84 2020-03-12 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:A3623S,ORF1b:P314L,ORF8:P30L,S:A222V,S:D614G,S:Q675H 1537 A.3 -17.0482 -64.7441 0.917356 0.899818 0.935236 2.41608e-09 24663.6 2020-03-13 ORF1a:H417R,ORF3a:G251V 1538 B.1.1.257 -20.4843 -92.8279 0.917267 0.90264 0.932131 1.15472e-26 4465.57 2020-03-03 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:I2230T,ORF1a:T1001I,ORF1b:K1383R,ORF1b:P314L,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:N501Y,S:P681H,S:S982A,S:T716I 1539 B.1.1.323 -26.8938 -158.887 0.917232 0.906068 0.928534 4.74443e-26 26376.5 2020-03-02 N:D3L,N:G204R,N:R203K,N:S235F,ORF14:G50N,ORF1a:A1708D,ORF1a:F3677L,ORF1a:G3676S,ORF1a:I2230T,ORF1a:S3675T,ORF1a:T1001I,ORF1b:P314L,ORF8:K68STOP,ORF8:Q27STOP,ORF8:R52I,ORF8:Y73C,S:A570D,S:D1118H,S:D614G,S:H69S,S:N501Y,S:P681H,S:S982A,S:T716I,S:V70I,S:Y144V 1540 B.1.1.142 -11.1488 -28.44 0.915155 0.888161 0.942969 2.68547e-06 2.0736e+06 2020-03-01 N:A220V,ORF10:V30L,ORF14:L67F,ORF1a:P3952S,ORF1b:P314L,S:A222V,S:D614G 1541 A.1 -9.67528 -21.7166 0.89703 0.863105 0.932287 3.86568e-16 137112 2020-02-25 1542 B.61 -20.4081 -92.1493 0.895857 0.879521 0.912496 2.11326e-27 9704.97 2020-03-04 ORF1a:T1538I,ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 1543 B.60 -31.3511 -215.328 0.882652 0.871332 0.894118 0 14215.3 2020-03-20 ORF1a:T265I,ORF1b:P314L,ORF3a:Q57H,ORF8:S24L,S:D614G 1544 B.40 -13.5234 -41.2449 0.880672 0.854432 0.907719 4.74304e-17 286273 2020-02-15 ORF1a:D3240A,ORF1a:S3884L,ORF1a:T265I,ORF1b:A1844V,ORF1b:P314L,ORF3a:G18V,ORF3a:Q57H,S:D614G