,Original,Detected,Disease-associated
[Haemophilus] ducreyi,12,4,2
Acinetobacter baumannii,23,15,7
Acinetobacter sp. 1289694,3,3,0
Acinetobacter sp. FDAARGOS_559,2,1,1
Aeromonas hydrophila,2,0,0
Akkermansia muciniphila,3,3,3
Anaplasma phagocytophilum,8,3,0
Anopheles gambiae,1,1,0
Arabidopsis thaliana,4,2,0
Archaeoglobus fulgidus,1,1,0
Bacillus anthracis,1613,972,457
Bacillus cereus,9,9,9
Bacillus sp. AY1-10,2,2,1
Bacillus sp. GZT,3,2,0
Bacillus thuringiensis,9,9,9
Blattella germanica,1,0,0
Bordetella bronchiseptica,2,2,0
Bordetella pertussis,1,1,0
Borreliella japonica,2,1,1
Brucella melitensis,2,0,0
Burkholderia cenocepacia,4,1,0
Burkholderia mallei,410,156,29
Burkholderia thailandensis,2,2,0
Caenorhabditis elegans,2,2,1
Candida parapsilosis,3,3,3
Candida tropicalis,3,3,3
Chlamydia caviae,1,1,0
Chlamydia psittaci,6,3,1
Chlamydia trachomatis,315,78,23
Chromobacterium violaceum,1,1,0
Citrobacter rodentium,11,1,0
Clostridioides difficile,7,2,0
Clostridium botulinum,8,1,1
Clostridium botulinum D phage,1,0,0
Clostridium perfringens,1,1,0
Clostridium tetani,1,1,0
Corynephage omega,1,0,0
Coxiella burnetii,249,75,13
Drosophila melanogaster,6,6,1
Ehrlichia chaffeensis,5,3,3
Elizabethkingia miricola,2,0,0
Enterococcus faecalis,8,8,0
Escherichia coli,113,68,10
Faecalibacterium prausnitzii,16,16,12
Finegoldia magna,3,0,0
Francisella tularensis,1124,611,240
Fusobacterium nucleatum,2,1,0
Haemophilus influenzae,6,6,2
Helicobacter pylori,3,1,1
Hepacivirus C,1,1,0
Human alphaherpesvirus 1,5,2,1
Human immunodeficiency virus 1,82,21,6
Human mastadenovirus C,44,14,6
Influenza A virus,1681,405,127
Lactiplantibacillus plantarum,2,0,0
Lactobacillus acidophilus,2,1,1
Lactococcus lactis,1,1,0
Legionella pneumophila,57,14,6
Leishmania major,1,0,0
Ligilactobacillus salivarius,1,1,1
Limosilactobacillus reuteri,2,2,0
Listeria monocytogenes,7,4,1
Moraxella catarrhalis,2,1,1
Mupapillomavirus 1,222,54,16
Murine coronavirus,2,1,1
Mycobacterium avium,1,1,0
Mycobacterium tuberculosis,195,73,29
Mycoplasma fermentans,1,0,0
Mycoplasma hyopneumoniae,2,1,1
Mycoplasma hyorhinis,2,2,1
Mycoplasma pneumoniae,7,6,6
Mycoplasma pulmonis,2,2,1
Neisseria gonorrhoeae,2,0,0
Neisseria meningitidis,5,3,3
Oenothera elata,1,1,0
Orientia tsutsugamushi,3,2,0
Pasteurella multocida,3,2,1
Plasmodium falciparum,4,1,0
Porphyromonas gingivalis,1,0,0
Proteus vulgaris,2,0,0
Pseudomonas aeruginosa,7,5,0
Rhodopseudomonas palustris,1,0,0
Rickettsia rickettsii,1,0,0
Saccharomyces cerevisiae,33,16,7
Saccharopolyspora erythraea,1,0,0
Salmonella enterica,636,187,63
Schizosaccharomyces pombe,3,1,1
Serratia proteamaculans,1,1,0
Shigella dysenteriae,1,0,0
Shigella flexneri,25,9,2
Spodoptera frugiperda,3,2,1
Staphylococcus aureus,39,13,11
Streptococcus dysgalactiae,2,2,2
Streptococcus equi,1,1,1
Streptococcus mutans,1,1,0
Streptococcus pyogenes,106,61,45
Streptococcus sp. 'group G',1,1,1
Thermotoga maritima,1,1,0
Vaccinia virus,10,4,1
Vibrio cholerae,3,1,0
Vibrio parahaemolyticus,1,1,0
Yersinia enterocolitica,4,0,0
Yersinia pestis,2090,1656,377
Yersinia pseudotuberculosis,25,15,6
Yersinia wautersii,4,3,1
Zea mays,1,0,0