1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000480479	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000482621	CCNL2	nonsense_mediated_decay	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000463260	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000400809	CCNL2	protein_coding	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000496007	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000482365	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000481223	CCNL2	nonsense_mediated_decay	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000418865	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000505849	CCNL2	processed_transcript	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000488340	CCNL2	nonsense_mediated_decay	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000492998	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000469113	CCNL2	processed_transcript	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000480646	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000471930	CCNL2	processed_transcript	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000408918	CCNL2	protein_coding	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000473872	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000425598	CCNL2	nonsense_mediated_decay	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000463895	CCNL2	retained_intron	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000497013	CCNL2	protein_coding	hg38	U	PseudoU
1	1388081	1388082	HeLa	25192136	-	ENSG00000221978	ENST00000408952	CCNL2	protein_coding	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000228549	ENST00000438002	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000228549	ENST00000451828	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000228549	ENST00000453554	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000228549	ENST00000457856	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000228549	ENST00000619677	BX284668.2	pseudogene	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000277234	ENST00000362684	RNU1-5P	snRNA	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000466256	CROCC	processed_transcript	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000375541	CROCC	protein_coding	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000445545	CROCC	protein_coding	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000467938	CROCC	protein_coding	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000492631	CROCC	processed_transcript	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000467715	CROCC	protein_coding	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000494191	CROCC	retained_intron	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000486318	CROCC	processed_transcript	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000498688	CROCC	processed_transcript	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000477773	CROCC	processed_transcript	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000497654	CROCC	retained_intron	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000465021	CROCC	processed_transcript	hg38	U	PseudoU
1	16873711	16873712	HeLa	25192136	+	ENSG00000058453	ENST00000465291	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000228549	ENST00000438002	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000228549	ENST00000451828	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000228549	ENST00000453554	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000228549	ENST00000457856	BX284668.2	lincRNA	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000228549	ENST00000619677	BX284668.2	pseudogene	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000277234	ENST00000362684	RNU1-5P	snRNA	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000466256	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000375541	CROCC	protein_coding	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000445545	CROCC	protein_coding	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000467938	CROCC	protein_coding	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000492631	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000467715	CROCC	protein_coding	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000494191	CROCC	retained_intron	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000486318	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000498688	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000477773	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000497654	CROCC	retained_intron	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000465021	CROCC	processed_transcript	hg38	U	PseudoU
1	16873712	16873713	HeLa	25192136	+	ENSG00000058453	ENST00000465291	CROCC	processed_transcript	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000199377	ENST00000362507	RNU5F-1	snRNA	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000424484	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000418644	C1orf228	protein_coding	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000455805	C1orf228	nonsense_mediated_decay	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000458657	C1orf228	protein_coding	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000441519	C1orf228	protein_coding	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000357508	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000445071	C1orf228	protein_coding	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000453711	C1orf228	protein_coding	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000421398	C1orf228	processed_transcript	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000444751	C1orf228	processed_transcript	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000434068	C1orf228	protein_coding	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000434520	C1orf228	processed_transcript	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000427321	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000446792	C1orf228	processed_transcript	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000444525	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000440383	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000427336	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000418779	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000568406	C1orf228	retained_intron	hg38	U	PseudoU
1	44721849	44721850	HeLa	25192136	-	ENSG00000198520	ENST00000535358	C1orf228	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000206885	ENST00000384158	SNORA75	snoRNA	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000322723	NCL	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000461347	NCL	retained_intron	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000356936	NCL	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000466274	NCL	retained_intron	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000494618	NCL	retained_intron	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000454824	NCL	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000417652	NCL	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000453992	NCL	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000436894	NCL	protein_coding	hg38	U	PseudoU
2	231455852	231455853	HeLa	25192136	-	ENSG00000115053	ENST00000484328	NCL	retained_intron	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000510645	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000508032	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000336812	DHX15	protein_coding	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000513036	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000512903	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000508368	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000504279	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000503562	DHX15	retained_intron	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000511553	DHX15	processed_transcript	hg38	U	PseudoU
4	24530644	24530645	HeLa	25192136	-	ENSG00000109606	ENST00000513092	DHX15	processed_transcript	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000511181	HEXB	protein_coding	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000261416	HEXB	protein_coding	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000513079	HEXB	retained_intron	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000515528	HEXB	retained_intron	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000510820	HEXB	retained_intron	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000504459	HEXB	retained_intron	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000513336	HEXB	protein_coding	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000511621	HEXB	retained_intron	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000503312	HEXB	nonsense_mediated_decay	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000513539	HEXB	processed_transcript	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000509579	HEXB	protein_coding	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000505859	HEXB	nonsense_mediated_decay	hg38	U	PseudoU
5	74720224	74720225	HeLa	25192136	+	ENSG00000049860	ENST00000513867	HEXB	retained_intron	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000427851	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000643028	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000642613	SLC29A1	retained_intron	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000371713	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000371755	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000371740	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000472176	SLC29A1	retained_intron	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000643869	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000371731	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000393841	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000371724	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000642777	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000645692	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000645259	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000647460	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000646582	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000645607	SLC29A1	retained_intron	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000643152	SLC29A1	retained_intron	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000371708	SLC29A1	protein_coding	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000646251	SLC29A1	nonsense_mediated_decay	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000646878	SLC29A1	retained_intron	hg38	U	PseudoU
6	44232899	44232900	HeLa	25192136	+	ENSG00000112759	ENST00000393844	SLC29A1	protein_coding	hg38	U	PseudoU
6	52995868	52995869	HeLa	25192136	+	ENSG00000202198	ENST00000365328	RF00100	misc_RNA	hg38	U	PseudoU
6	52995868	52995869	HeLa	25192136	+	ENSG00000283293	ENST00000636484	RN7SK	snRNA	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000605788	NOLC1	protein_coding	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000464969	NOLC1	nonsense_mediated_decay	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000488254	NOLC1	protein_coding	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000603946	NOLC1	nonsense_mediated_decay	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000461421	NOLC1	protein_coding	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000476468	NOLC1	protein_coding	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000370007	NOLC1	protein_coding	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000477977	NOLC1	processed_transcript	hg38	U	PseudoU
10	102160713	102160714	HeLa	25192136	+	ENSG00000166197	ENST00000405356	NOLC1	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000212443	ENST00000391141	SNORA53	snoRNA	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000401722	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000188376	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000551917	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000546766	SLC25A3	retained_intron	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000548046	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000552981	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000551265	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000550695	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000547534	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000549338	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000551123	SLC25A3	nonsense_mediated_decay	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000548847	SLC25A3	protein_coding	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000547908	SLC25A3	retained_intron	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000547444	SLC25A3	retained_intron	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000548480	SLC25A3	retained_intron	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000547869	SLC25A3	retained_intron	hg38	U	PseudoU
12	98599743	98599744	HeLa	25192136	+	ENSG00000075415	ENST00000228318	SLC25A3	protein_coding	hg38	U	PseudoU
12	112022708	112022709	HeLa	25192136	+	ENSG00000089248	ENST00000261735	ERP29	protein_coding	hg38	U	PseudoU
12	112022708	112022709	HeLa	25192136	+	ENSG00000089248	ENST00000455836	ERP29	protein_coding	hg38	U	PseudoU
12	112022708	112022709	HeLa	25192136	+	ENSG00000089248	ENST00000553161	ERP29	retained_intron	hg38	U	PseudoU
12	112022708	112022709	HeLa	25192136	+	ENSG00000089248	ENST00000552052	ERP29	protein_coding	hg38	U	PseudoU
12	112022708	112022709	HeLa	25192136	+	ENSG00000089248	ENST00000546477	ERP29	protein_coding	hg38	U	PseudoU
12	120291824	120291825	HeLa	25192136	-	ENSG00000202538	ENST00000365668	RNU4-2	snRNA	hg38	U	PseudoU
12	120291831	120291832	HeLa	25192136	-	ENSG00000202538	ENST00000365668	RNU4-2	snRNA	hg38	U	PseudoU
14	69386985	69386986	HeLa	25192136	-	ENSG00000100632	ENST00000557016	ERH	protein_coding	hg38	U	PseudoU
14	69386985	69386986	HeLa	25192136	-	ENSG00000100632	ENST00000216520	ERH	processed_transcript	hg38	U	PseudoU
14	69386985	69386986	HeLa	25192136	-	ENSG00000100632	ENST00000557697	ERH	processed_transcript	hg38	U	PseudoU
14	69386985	69386986	HeLa	25192136	-	ENSG00000100632	ENST00000555373	ERH	protein_coding	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000261460	ENST00000570175	AC009690.2	antisense	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000260729	ENST00000379915	AC009690.1	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000268097	HEXA	protein_coding	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000565873	HEXA	retained_intron	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000564677	HEXA	retained_intron	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000567411	HEXA	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000566304	HEXA	protein_coding	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000569116	HEXA	retained_intron	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000567027	HEXA	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000568777	HEXA	retained_intron	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000567159	HEXA	protein_coding	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000563762	HEXA	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000566672	HEXA	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000569410	HEXA	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000569509	HEXA	processed_transcript	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000568260	HEXA	nonsense_mediated_decay	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000563908	HEXA	retained_intron	hg38	U	PseudoU
15	72345855	72345856	HeLa	25192136	-	ENSG00000213614	ENST00000567213	HEXA	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000267935	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000567195	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000566843	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000564815	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000562610	COMMD4	nonsense_mediated_decay	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000338995	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000567023	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000567720	COMMD4	nonsense_mediated_decay	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000566230	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000564587	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000565517	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000564068	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000480484	COMMD4	nonsense_mediated_decay	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000567399	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000561662	COMMD4	processed_transcript	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000568034	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000567377	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000562789	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000568301	COMMD4	protein_coding	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000568877	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000565834	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000563220	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000569245	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000562310	COMMD4	retained_intron	hg38	U	PseudoU
15	75339592	75339593	HeLa	25192136	+	ENSG00000140365	ENST00000567935	COMMD4	retained_intron	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000222247	RPL18A	protein_coding	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000600147	RPL18A	protein_coding	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000599898	RPL18A	protein_coding	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000602216	RPL18A	retained_intron	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000597648	RPL18A	protein_coding	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000599870	RPL18A	protein_coding	hg38	U	PseudoU
19	17862850	17862851	HeLa	25192136	+	ENSG00000105640	ENST00000600238	RPL18A	retained_intron	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000254977	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000399006	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000405977	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000449299	BTBD3	nonsense_mediated_decay	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000450368	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000422390	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000455911	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000430557	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000488503	BTBD3	processed_transcript	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000471120	BTBD3	processed_transcript	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000473416	BTBD3	processed_transcript	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000473180	BTBD3	processed_transcript	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000618918	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000378226	BTBD3	protein_coding	hg38	U	PseudoU
20	11924665	11924666	HeLa	25192136	+	ENSG00000132640	ENST00000618296	BTBD3	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000279036	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000279035	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638246	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000543458	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638383	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638978	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639984	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640364	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638612	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638689	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640108	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640996	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640666	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000372689	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639499	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640175	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000455050	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638938	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640272	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638671	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640107	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640585	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639932	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638445	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640692	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638387	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640986	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638594	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638745	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638489	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638353	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638714	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638953	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639783	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640542	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639382	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640210	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639235	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638478	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639286	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640194	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000432270	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639417	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000545755	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640324	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639194	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639664	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638710	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639292	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638415	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639250	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638537	PIGT	processed_transcript	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638962	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640940	PIGT	processed_transcript	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640549	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639872	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640649	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638927	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639239	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638641	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638277	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638241	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640253	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640638	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638691	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000424705	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640123	PIGT	protein_coding	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638967	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000638864	PIGT	nonsense_mediated_decay	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000640691	PIGT	processed_transcript	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000595203	PIGT	retained_intron	hg38	U	PseudoU
20	45424248	45424249	HeLa	25192136	+	ENSG00000124155	ENST00000639058	PIGT	processed_transcript	hg38	U	PseudoU
MT	1258	1259	HeLa	25192136	+	ENSG00000211459	ENST00000389680	MT-RNR1	Mt_rRNA	hg38	U	PseudoU
MT	1370	1371	HeLa	25192136	+	ENSG00000211459	ENST00000389680	MT-RNR1	Mt_rRNA	hg38	U	PseudoU
X	47132688	47132689	HeLa	25192136	+	ENSG00000201659	ENST00000364789	RNU12-2P	snRNA	hg38	U	PseudoU
X	47132697	47132698	HeLa	25192136	+	ENSG00000201659	ENST00000364789	RNU12-2P	snRNA	hg38	U	PseudoU
X	119787403	119787404	HeLa	25192136	-	ENSG00000198918	ENST00000477403	RPL39	processed_transcript	hg38	U	PseudoU
X	119787403	119787404	HeLa	25192136	-	ENSG00000198918	ENST00000468844	RPL39	processed_transcript	hg38	U	PseudoU
X	119787403	119787404	HeLa	25192136	-	ENSG00000198918	ENST00000361575	RPL39	protein_coding	hg38	U	PseudoU
X	119787403	119787404	HeLa	25192136	-	ENSG00000206622	ENST00000383895	SNORA69	snoRNA	hg38	U	PseudoU