Additional file 8. Outputs of cmsearch (Infernal) with alignments of candidate histidine-specific T-boxes in Firmicutes. Description of data: Alignments for 157 T-boxes were obtained by running the cmsearch program using the RF00230 family from the Rfam database applied to upstream regions of the histidine metabolism genes from Firmicutes. Each output represents the found T-box aligned with the T-box Rfam covariance model including RNA secondary structure annotation. >> fig|1121864.4.peg.853 Histidine ABC transporter, permease protein [Enterococcus cecorum DSM 20682 = ATCC 43198] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.5e-34 130.7 0.1 cm 1 224 [] 526 753 + .. 0.97 no 0.43 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 +AAA+:C++UGAA::G: A+AGUA:: CA:A U U:UU+CAGAGAGC::::GGUUGGUG +A::::GUA:A A U:UG+::GA fig|1121864.4.peg.853 526 GAAAAUACGUUGAAAAGA-AGAGUAGC-CAUAG--UCCUUUUUCAGAGAGCUUCUGGUUGGUGCAAAGAAGUAGAGACCUAUGUGUGA 609 ******************.********.78887..999****************************************888888**** PP NC ------>>>>--->>,,<<<<<<<___.__________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAA.guuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaG 164 AA ++:C::GGAG:A :U U:C:GAA +AGUA:G:A A: CGG+U GCCCGUUAU G + A +UA +GAG fig|1121864.4.peg.853 610 AACACAUCUUGGAGUAGAUUUUCUGAAaUGAGGAAGUAGGAAGAUUCGGGUG-GCCCGUUAUagccagagucaAGUAGACUUAUUGAG 696 ***************************559999*******************.********************999************ PP NC <<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 :::: U: + A :A :::: AAA+A:GGUGG ACC:CG: AA :CG:CC:UU fig|1121864.4.peg.853 697 ACAAUUACUGCGAGGUAGUUGUgAAAAAAGGUGGAACCACGU---CAAC-ACGUCCUUUGG 753 **********************9999***************9...6775.*********** PP >> fig|1140002.4.peg.3343 Histidine ABC transporter, permease protein [Enterococcus avium ATCC 14025] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.7e-30 117.4 0.0 cm 1 224 [] 576 801 + .. 0.89 no 0.46 vv vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +AA :CAAUGAA::G: A+AGUA::: + UU ::U +CAGAGA: C:::GGU+GGUGAGA:::G :A::+A :::G fig|1140002.4.peg.3343 576 CAAACGACAAUGAAAAGA-AGAGUAGCAGUUCA--UUUGUUCUCAGAGAGUCUCUGGUAGGUGAGAAGAGGCAGCAAU-GUUUUGUG 658 ******************.********998777..******************************************9.55699*** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauuauaua 159 AA ++:C:: GAG: :U:::::GAA ++UAGUA:::::A: CGG+ CGCCCGUUA + U+ A fig|1140002.4.peg.3343 659 AACCACAUCUUUGAGUCGAUCAGUUGAA---UUUAGUAGGCUGAUCCGGGAGCGCCCGUUACagcagaggucagauuGACCAGUUGA 742 ****************************...999**************************************966433333333333 PP v v NC ,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +A G U:G :G + A +C: C:A AAA+A:GGUGG ACC:CG:: A U::CG:CC:UU fig|1140002.4.peg.3343 743 GAUCGUUCGUUG---UGAGACGGCGAUgAAAAAAGGUGGAACCACGUG---A-UUACGUCCUUUAG 801 333355555555...7888888888888999****************7...4.47*********** PP >> fig|1158606.4.peg.710 ATP phosphoribosyltransferase (EC 2.4.2.17) / ATP phosphoribosyltransferase regulatory subunit rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-27 106.8 0.0 cm 1 224 [] 689 923 + .. 0.96 no 0.50 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 ++ :C+A GA ::G: A+AGUA:: ::C + ::U+ AGAGAGCC:::GGUUGGUG +A:::GGU:: ++ G:: ::GA fig|1158606.4.peg.710 689 UAUUUGACGAAGACAAGA-AGAGUAGCAGUCUG-GCAGUUGUUUAGAGAGCCUUUGGUUGGUGGAAAAAGGUCGGCGGCGGACGGUGA 774 ******************.*************9.8999************************************************** PP v v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauauaa 160 AA ++:C::GGAG: C :U:C:GAA + AGUA:G:A: G CGG+UU GCCCG UAU UGAU A + fig|1158606.4.peg.710 775 AACACAUCUUGGAGUCGCCCUUCUGAA---UCGAGUAGGAAGAGCCGGGUUAGCCCGAUAUcgcugcggucauuguuUGAUGACUCGU 859 ***************************...999********************************************99999999999 PP NC ,,,,<<<<<<<___.._____>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 161 AGaGguuguuguaa..aaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAG: ::U G + AA C A:: : AAA+A:GGUGG ACC:CG: ++ :CG:CC:UU fig|1158606.4.peg.710 860 UGAGAUUCUGGCUUguGAAGGCUAGGGUgAAAAAAGGUGGAACCACGUU--AUU-GACGUCCUUUGG 923 99999999988776666677788999999999****************9..666.9*********** PP >> fig|883081.3.peg.762 Histidine permease YuiF [Alloiococcus otitis ATCC 51267] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.6e-19 74.5 0.0 cm 1 224 [] 631 839 + .. 0.87 no 0.42 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 AU AAA:C++ GA+:GG AAG ::U :: U+ U:: + AGAGA :C:GC UGGUG +AGC:G: ::A+ A :: A::GA fig|883081.3.peg.762 631 AUCAAAGCGUCGAUUGGACCAAGC-UAUUUU----UAUUGGCUUAGAGAGUCAGCAUGUGGUGGAAGCUGAACCAAUA--AAUAUAGAU 712 ******************999996.444333....445*************************************998..557777888 PP v vvv vvv v NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.......,,,,,,,,,,,,,,,<<<<<<< CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.......UgauuauauaaAGaGguuguug 171 A ++ CC: GAG:+ ::U: + +AA :A:: CG:U ++:CGUUA U+ + A A A +GAG::U: :: fig|883081.3.peg.762 713 ACACACCCAUGAGUUGUAUA-AAAAA----------A-UUAUACCGUUAG-UUACGUUACcacugugUUCAGACACACUGAGCCUCCCC 788 8*************766555.43343..........3.455667******.99**************99*****************999 PP v v v NC ___._____>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 172 uaa.aaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + A +:: :A::AAA +A:GGUGG ACC:CG +A CG:CC:UUUU fig|883081.3.peg.762 789 CUUgCGAAAGGAGAGGAAAuAAAGGUGGAACCACGGU---UA-GACGUCCUUUUU 839 877689999*******7777***************84...56.58********** PP >> fig|883103.3.peg.152 Histidine permease YuiF [Dolosigranulum pigrum ATCC 51524] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.7e-17 67.5 0.0 cm 1 224 [] 707 919 + .. 0.79 no 0.45 v vvvvvv v v vvvvvv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 +A AAGC+AUGA :GG ++ C : U+CAGAGA:::::CGGU GGUG +AG::::: : + A AA fig|883103.3.peg.152 707 CAAUAAGCGAUGAGUGGA-------CGAUCUGGC-CCGAUUUUCAGAGAGUUAACGGU-GGUGGAAGUUAACGUAGGUAC------CAA 780 *****************9.......333333333.444466789**************.*************76555544......467 PP v NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,..........................,, CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu..........................Ug 151 + ++ CC: GAGC+ ::UU:::+AA :::AA:: CG: U C +:CGUUA fig|883103.3.peg.152 781 GCACACCCACGAGCUAUAUUAUUAAA----------AAUAAUAUCGUCUGCuCUGCGUUACggagccgugauggcagaucuuaaacuGC 859 79999********************9..........***************999******66666666666666666666666666555 PP vv v v vv v v NC ,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 152 auuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U+ AUA +GAGG:: UU+ ++::CAAA UA:GGUGG ACC:CG UA CG:CC:UU + fig|883103.3.peg.152 860 CUAUCAUACUGAGGCA----------UUU-UUUGCAAAgUAAGGUGGAACCACGUC--UAC-AGCGUCCUUUCA 919 5555555566666554..........222.336787777***************97..777.89********** PP >> fig|1121865.5.peg.1295 Histidine ABC transporter, permease protein [Enterococcus columbae DSM 7374 = ATCC 51263] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.2e-37 144.1 4.0 cm 1 224 [] 604 832 + .. 0.97 no 0.36 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 ++AAAA:C+ UGAA::G: AAAGUA:: ::: U + UUUU+ AGAGAG:C:::GGUUGGUG+GA:::G:UAAA+++ +::: ::G fig|1121865.5.peg.1295 604 UAAAAAACGCUGAAAAGA-AAAGUAGCUUUACU--CAUUUUUUAAGAGAGUCUCUGGUUGGUGUGAAGAGAUAAAAGG-AUAAGGUG 686 ******************.*************9..9999999*********************************999.9******* PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGa 163 AAA ++:C::GGAG:+ :UUU:C:GAAGU A+UAGUA:G:AAA: CGG+U++GCCCGUUAU G U A ++ + A fig|1121865.5.peg.1295 687 AAACACAUCUUGGAGUUGAUUUUCUGAAGUGAUUAGUAGGAAAAUCCGGGUAUGCCCGUUAUcgcuuuagucaAGUUGACUAGCUAA 773 ************************************************************************988888888889999 PP NC ,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G:U::UU: ++ A :AA::A: AA+ +A:GGUGG ACC:CG: U AU :CG:CC:UU + fig|1121865.5.peg.1295 774 GAUAAUUACUGUGAGGUAAUUAUgAAUaAAAGGUGGAACCACGU---UGAU-ACGUCCUUUAA 832 ***********************99999****************...7887.*********** PP >> fig|1139219.4.peg.1564 ATP phosphoribosyltransferase (EC 2.4.2.17) / ATP phosphoribosyltransferase regulatory subuni rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-33 129.8 0.6 cm 1 224 [] 391 704 + .. 0.96 no 0.39 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +U :C+ UGAA::G: A+AGUA:U: A:A+ ++A:U: A AGAGAGCC:::GG UGGUG++A:::GGU:A:U ++U:U :A:G fig|1139219.4.peg.1564 391 UUUUUGACGCUGAAAAGA-AGAGUAGUAGAAAA--AAACUGCAAAGAGAGCCUUUGGGUGGUGUAAAAAGGUCAGUUGUUUUUUAUG 474 ******************.*************9..**************************************************** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,......................... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu......................... 149 AAA ++:C::GGAG:+ C:UU:::GAA +A+AGUA:::AA:G CGG+UU GCCCGUUAU fig|1139219.4.peg.1564 475 AAACACAUCUUGGAGUUGCAUUUUUGAA---UAAAGUAAAAAAUGCCGGGUUAGCCCGUUAUcgcugcggucauuguuggauggcua 558 ****************************...99****************************************************** PP NC ............................................................................,,,,,,,,,,, CS T-box 150 ............................................................................Ugauuauauaa 160 U AU A fig|1139219.4.peg.1564 559 gacaaaaaggcugacagccagaggagaaauaaacaauaaacuugugaaauaaucaacaagcccaccucuuuuguuaGCUUGAUCGCA 645 ***************************************************************************967777778888 PP v v v v NC ,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 161 AGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + AG U:::U A+U A:::A AAA U::GGUGG ACC:CG: U U :CG:CC::U + fig|1139219.4.peg.1564 646 UAAGGUCUAUU----AUUGCAUAGAUAAAuUGAGGUGGAACCACGCG--UGUUAGCGUCCUCUGA 704 88899999998....578889999997777****************9..66678*********** PP >> fig|1139219.4.peg.2091 Histidine ABC transporter, permease protein [Enterococcus dispar ATCC 51266] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.6e-35 133.9 0.5 cm 1 224 [] 599 833 + .. 0.96 no 0.38 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 A+ A :CA+ GA+::G: A+AGUA:::: AU :U:UA AGAGA::C:::GGU+GGUGA+A:::G:::A: A + ::::G fig|1139219.4.peg.2091 599 AAUACGACAUCGAUAAGA-AGAGUAGCAAGUAU-GGCCAUCUAAAGAGAGUCUCUGGUAGGUGAAAAGAGACGAUGAC-AUUUUGUG 682 ******************.*********99987.8999**************************************99.6679**** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauau 158 AA ++:C::GGAG:+ :UUU:C:GAA +U A+AGUA:G:AAA: CGG+U++GCCCGUUAU GAU A +U fig|1139219.4.peg.2091 683 AACCACAUCUUGGAGUUGUUUUUCUGAA-AUGAAAGUAAGAAAAUCCGGGUAUGCCCGUUAUagcaacagucauugauAGAUGACUU 768 ****************************.9************************************************999****** PP v v NC ,,,,,,<<<<<<<___._____>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaa.aaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A AGAG::U:UU:+ + +AA :AA:A:: AAA+A:GGUGG ACC:CG: ++ :CG:CC:UU fig|1139219.4.peg.2091 769 AUAGAGACUCUUUACUgUAAAGUAAGAGUgAAAAAAGGUGGAACCACGUA--AUU-CACGUCCUUUAG 833 **********9987665889999******9999****************7..666.7*********** PP >> fig|1140001.4.peg.1251 Histidine ABC transporter, permease protein [Enterococcus durans ATCC 6056] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.8e-33 128.2 0.4 cm 1 224 [] 571 801 + .. 0.96 no 0.41 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +AA :CA+ GAA::G: AAAGUA:: :::A ++ ::UU+ AGAGAG:C:::GGU+GGUGAGA:::G:UA::++ U::: ::G fig|1140001.4.peg.1251 571 CAAACGACAUCGAAAAGA-AAAGUAGCGAUUA---AAUGUUUUAAGAGAGUCUCUGGUAGGUGAGAAGAGAUAGCAGU-UAAUAGUG 652 ******************.************9...688*************************************999.99****** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauau 158 AAA ++:C::GGAG: :UUU:C:GAA +A AGUA:G:AAA: CGG+ + GCCCGUUAU GAU A + fig|1140001.4.peg.1251 653 AAACACAUCUUGGAGUCGAUUUUCUGAA--AUAGAGUAGGAAAAUCCGGGAA-GCCCGUUAUagcugcggucguuguuAGAUGACCA 736 ****************************..8899******************.************************9999999999 PP NC ,,,,,,<<<<<<<___._____>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaa.aaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+ AGGU:::::U + A :::::ACAAA +A:GGUGG ACC:CG:: ++ ::CG:CC:UU + fig|1140001.4.peg.1251 737 GAUAAGGUUAGUAUCCgUGAGGUGCUGACAAAaAAAGGUGGAACCACGUA--AUU-UACGUCCUUUGA 801 99999********866588899*******7777****************9..777.9*********** PP >> fig|1140003.4.peg.1987 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Enterococcus sulfureus ATCC 49903] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.1e-28 110.6 5.6 cm 1 224 [] 714 955 + .. 0.93 no 0.36 v v NC ::::::<<------<<<<-------<<<<<<---.----<<<--------<<<<<<___________>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauc.cuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaau 86 A+ AAA:C+AUGAA:G::AAA : :::: UC UU UUUA AGAGAGC::::GGUUGGUGA+A::::GUAA +A A+:::: : fig|1140003.4.peg.1987 714 AAUAAAACGAUGAAAGAAAAA----GGCUUAUUCcAUUCUUUUAAAGAGAGCUCUUGGUUGGUGAAAAAGAGUAAGAACAAUAAGAC 796 ******************664....9999998884666667888***********************************9999999* PP NC -------->>>>--->>,,<<<<<<<____........._________>>>>>>>,<<<______>>>,,,,............... CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAg.........uuaauAgUAgggaaagaCGguuucgccCGUUAu............... 149 GA ++::C:GGAG: :UUU:::GAA U +A+AGUA:::AAA:ACGGU ++CCGUUAU fig|1140003.4.peg.1987 797 GA--CACAUUCUGGAGU-GUUUUUUUGAACagauaaauaUCUAAAGUAGGAAAAAACGGUAG-UUCCGUUAUcgcuaagaucauucg 879 **..8888*********.67777888888558******************************.99********************** PP v v NC ...,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 ...UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U A U A+GAG:UU::::U ++ A +::::AA:AAA +::GGUGG ACC:CG: U+ :CG:CC::U fig|1140003.4.peg.1987 880 aaaGAGUGACCUGAUGAGUUUUGAUUUGUGAGAAUCAAAAAAAucAGAGGUGGAACCACGU--GUU--GACGUCCUCUAG 955 **988999999*****************************7777****************9..344..49********** PP >> fig|1158600.4.peg.1565 Histidine ABC transporter, permease protein [Enterococcus faecium ATCC 8459] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.3e-33 128.6 0.0 cm 1 224 [] 611 956 + .. 0.99 no 0.45 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +AA :CA+ GAA::G: A+AGUA:: :::A ::UU+ AGAGA: C:::GGUUGGUG +A:::G :A::++ U::: ::G fig|1158600.4.peg.1565 611 CAAAUGACAUCGAAAAGA-AGAGUAGCCGUUA---GGUGUUUUUAGAGAGUCUCUGGUUGGUGGAAAGAGGCAGCAGU-UAACCGUG 692 ******************.************9...688*************************************999.99****** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,......................... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu......................... 149 AAA ++:C::GGAG: :UUU:C:GAAG +AUAGUA:G:AAA: CGG+ + GCCCGUUA fig|1158600.4.peg.1565 693 AAACACAUCUUGGAGUCGAUUUUCUGAAGCGUAUAGUAGGAAAAUCCGGGGA-GCCCGUUACagcugcggucguugcuagaugacca 778 ****************************************************.********************************** PP NC ....................................................................................... CS T-box 150 ....................................................................................... 149 fig|1158600.4.peg.1565 779 gauaaggcuggcuuuuccgugaggagucgguaaaaaaagguggaaccacgugauuaacguccuuugaucuucggaucaaaggacuuu 865 *************************************************************************************** PP NC ..................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>> CS T-box 150 ..................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGu 217 A A + +++GAG UU:UU: + AA :AA:AA AAA +::GGUGG ACC:CG:: UAA ::CG: fig|1158600.4.peg.1565 866 uuguuuucaucugaacggCAACGACUGUGUGAGGUUUUUUCUGCAAGGAAAAAAUAAAcAGAGGUGGAACCACGUA--UAA-UACGU 949 ******************999999*******************************9998****************9..9**.9**** PP NC >>>>::: CS T-box 218 CCcuUuu 224 CC::UU fig|1158600.4.peg.1565 950 CCUCUUG 956 ******* PP >> fig|1158607.4.peg.3205 Histidine ABC transporter, permease protein [Enterococcus pallens ATCC BAA-351] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.1e-32 124.9 0.0 cm 1 224 [] 614 955 + .. 0.99 no 0.44 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +AA :CAAUGAA::G: A+AGUA::: :A+ U ::UU+ AGAGA::C:::GG UGGUGA+A:::G::A::++ U: :::G fig|1158607.4.peg.3205 614 CAAACGACAAUGAAAAGA-AGAGUAGCAGGUAA--GUUGCUUUUAGAGAGUCUCUGGCUGGUGAAAAGAGACAGCAGU-UAGUUGUG 696 ******************.*************9..*****************************************99.888***** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,......................... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu......................... 149 AA ++:C:: GAG: :U::::GAA +AGUA::::A: CGG+ GCCCGUUA fig|1158607.4.peg.3205 697 AACCACAUCUUUGAGUCGGCUAGUUGAA---GCAAGUAGGCUAGUCCGGGAGGGCCCGUUACagcuguggucaaguugaccagugga 780 ****************************...899***************************************************** PP NC ....................................................................................... CS T-box 150 ....................................................................................... 149 fig|1158607.4.peg.3205 781 gauugcuuguugugagacagcaaugaaaaaagguggaaccgcguaauuuacguccuuuagucauuaugacuaagggacuuuuuuuau 867 *************************************************************************************** PP v v NC .............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>> CS T-box 150 .............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcu 221 U A AAAGAGG:U: U: ++AA :A :A:CAAA +::GGUGG ACC:CG: UAA :CG:CC:: fig|1158607.4.peg.3205 868 uucaccaagcuggCAUUGACCCAAAGAGGCUUUUUCUGUAAAGAAUAAGCAAAcaAGAGGUGGAACCACGUU--UAACGACGUCCUC 952 *************889999*******************************9888******************..8888********* PP NC ::: CS T-box 222 Uuu 224 U fig|1158607.4.peg.3205 953 UGG 955 *** PP >> fig|1158610.4.peg.841 Histidine ABC transporter, permease protein [Enterococcus phoeniculicola ATCC BAA-412] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.1e-34 132.6 3.3 cm 1 224 [] 603 954 + .. 0.99 no 0.39 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A+A :CA+ GAA::G: AAAGUA:::: C ++ ::UU+ AGAGAG:C:::GGUUGGUGAGA:::G:UA::U+ +G ::::GA fig|1158610.4.peg.841 603 AAAUUGACAUCGAAAAGA-AAAGUAGCAAGCG---AAUGCUUUAAGAGAGUCUCUGGUUGGUGAGAAGAGAUAGCUGU-AGGUUGUGA 685 ******************.***********99...789***************************************9.788****** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,........................... CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu........................... 149 AA ++:C::GGAG: :UUU:C:GAA + A++AGUA:G:AAA: CGG+ + GCCCGUUAU fig|1158610.4.peg.841 686 AACACAUCUUGGAGUCGUUUUUCUGAA-AAAUAAGUAGGGAAAUCCGGGAA-GCCCGUUAUagcugcggucauugauugaugaccaga 771 ***************************.9999*******************.************************************ PP NC ........................................................................................ CS T-box 150 ........................................................................................ 149 fig|1158610.4.peg.841 772 ugagguuaguaacugcaaaguacuaacaaauaaaagguggaaccacgugauaaacguccuuuagucuauugacugaagggcuuuuuuu 859 **************************************************************************************** PP NC .....................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>> CS T-box 150 .....................UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuC 215 AU A + A AGAGGUU:UU:U ++AA :AA:AAC AA+U::GGUGG ACC:CG: U AU :C fig|1158610.4.peg.841 860 auuccauuuuuucuggaaaucCAAUGACUGAUAGAGGUUUUUCUUGUAAAGGAAAAACgAAUUGAGGUGGAACCACGUU--UGAUGAC 945 *********************99999999*****************************9999*****************..8889*** PP NC >>>>>>::: CS T-box 216 GuCCcuUuu 224 G:CC::UU fig|1158610.4.peg.841 946 GUCCUCUUG 954 ********* PP >> fig|272621.13.peg.1594 Histidine ABC transporter, permease protein [Lactobacillus acidophilus NCFM] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-28 110.0 0.3 cm 1 224 [] 613 845 + .. 0.95 no 0.38 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 A+AA A:C + GAA::G:A AGUAAU::::AU U U A AGAGA::::: G+U GGUG +A :::::A AU::::AU fig|272621.13.peg.1594 613 AAAACAACUUAGAACAGAAGCAGUAAUAUUGAU--UGUAGUAAUAGAGAGUUUCUGAU-GGUGGAAaUGAAACAUGC--AUCGAUAU 694 ********************************9..7777789*************999.7776666599**998654..59****** PP v v NC ----.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,..............,,,,,,,, CS T-box 87 GAAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu..............Ugauuaua 157 GAA ++:C:: GAG:+ UU::C:GAA +++AGUA:G::AA CGG+ U+ GCCCGUUAU U U+A + fig|272621.13.peg.1594 695 GAAUuCACAUCUGUGAGUUGAUUCUCUGAA---UUAAGUAGGAGAACCCGGGCUUaGCCCGUUAUagcuaaagguugauUAUUAACU 778 ***98899**********************...999*****************999***********************9999**** PP v v NC ,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 158 uaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UA +GAG ::::U:+ ++ A U:A:::: AAA U::GGUGG A C:CGA U A UCG:CC:: U+ fig|272621.13.peg.1594 779 UAUUGAGGCAAGUUACGUGAGUAACUUGUAAAcaUGAGGUGGAAUCGCGAU-UUCA-UUCGCCCUCGUA 845 *****************************9888*****************8.6666.8*********** PP >> fig|525271.4.peg.1561 Histidine ABC transporter, permease protein [Enterococcus faecalis ATCC 29200] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.1e-34 131.1 0.0 cm 1 224 [] 317 549 + .. 0.96 no 0.41 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + AAAA:CA GAA::G: A+AGUA :U::: + U U: U AGAGA::C:::GGUUGGUG +A:::G:: :A+A+ +:::A: GA fig|525271.4.peg.1561 317 UGAAAAACAGAGAACAGA-AGAGUAACUGUUUC--CUUUAGUGAAGAGAGUCUUUGGUUGGUGGAAAAAGACGUAAAG-AAACAGCGA 400 ******************.*************9..88888899*****************************888887.9******** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..........,,,,,,,,,,,,,,,<< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..........UgauuauauaaAGaGgu 166 A ++:C::GGAG:+ ::UU:::GAA +UAGUA:::AA:: CG + C C CGUUA+ U +A +U A+ AG U fig|525271.4.peg.1561 401 ACCACAUCUGGGAGUUGACUUUUUGAA-CCCUUAGUAGGAAAGUCCGGGACCACUCGUUAAcaggcgaaguUAUGAACUUCAUAAGGU 487 ***************************.9999***************************************99999************ PP v v NC <<<<<________>>>>>>>,,,.,<<<<-------<<<<<_....____..._>>>>>>>>>::: CS T-box 167 uguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGaga....AuaA...UcuCGuCCcuUuu 224 U::UGU + A +CA::AA AAA UA:GGUGG ACC:CGA A UCG:CC:UU fig|525271.4.peg.1561 488 UCGUGUUGCGAAACACGAAUAAAcUAAGGUGGAACCACGAUAauug----auuAUUCGUCCUUUGG 549 ********************9998****************995444....45559*********** PP >> fig|525271.4.peg.1561 Histidine ABC transporter, permease protein [Enterococcus faecalis ATCC 29200] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (2) ! 1.2e-26 102.5 0.0 cm 1 224 [] 705 947 + .. 0.94 no 0.38 vvv vvv NC ::::::<<------<<<<.-------<<<<<<-------<<<--------<<<<<<____._______.>>>>>>>>>----->>>>> CS T-box 1 auaAAagCaaUgAaggGG.AAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu.GgUGaGA.gccgguaaauaaaugugaa 85 +U AA:CAA G +::GG A AGUAA A: U CUU ::UUACAGAGA ::::: +UU G+UGA+A ::::: A:: A U:U fig|525271.4.peg.1561 705 UUGCAAUCAAGGCUUAGGaCAUAGUAAUUUAGCU-CUUCCUUUACAGAGACUUUUUCAUUgGCUGAAAgAAAAAGAUGGAU-UCUUCU 790 ******************7799*******99998.9999***********88888888888*******7777788888877.777777 PP NC >-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____..__>>>,,,,................,,,,,, CS T-box 86 uGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc..gccCGUUAu................Ugauua 155 U A ++CC:: AG:+ :UUU:C:GAA ++UAGUA:G:AAA: CG U +C ++ CGUUA+ +A fig|525271.4.peg.1561 791 UUACUCACACCUAAAAGAUGUUUUUCUGAAUCCUUUAGUAAGAAAAACCGGUGACucUAUCGUUAAcagagaguaguugucaACGCAA 878 878778888*******************************************9999999***********************889999 PP NC ,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 156 uauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++ A+ AG :U::U:U ++ A +:A::A: AAA U::GGUGG ACC:CGA: A :UCG:CC::UU fig|525271.4.peg.1561 879 CUACAUAAGGCUUAUCUUGUGAAAGAUAAGUAAAuUGAGGUGGCACCACGAACGCGA-UUCGUCCUCUUG 947 999999*************************7777*****************99999.************ PP >> fig|565653.4.peg.2153 Histidine ABC transporter, permease protein [Enterococcus gallinarum EG2] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9e-36 137.9 0.0 cm 1 224 [] 503 862 + .. 0.99 no 0.42 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A+A A :CA+ GAA::G: A+AGUA::::: U+CUU :UUU+ AGAGA::C:::GG UGGUGAGA:::G::AA:+A+ :::::GA fig|565653.4.peg.2153 503 AAACAGACAUCGAAAAGA-AGAGUAGCAAGGUUUCUUCGUUUUAAGAGAGUCUCUGGCUGGUGAGAAGAGACAACAAG-GACUUGUGA 588 ******************.***********************************************************.555****** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,........................... CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu........................... 149 A ++:C::GGAG: : UU:C:GAA + AGUA:G:AA : CGG+ +GCCCGUUAU fig|565653.4.peg.2153 589 ACCACAUCUUGGAGUCGUUUUUCUGAA---UCGAGUAGGAAAGACCGGGAGUGCCCGUUAUagcagcagucauuguuugaugacuuuc 673 ***************************...999******************************************************* PP NC ........................................................................................ CS T-box 150 ........................................................................................ 149 fig|565653.4.peg.2153 674 ugagaucaguugcugugaagcacugauaaacaaagguggaaccgcguugauaacguccuuuagcuguaauggcuaaaggacuuuuuuu 761 **************************************************************************************** PP v NC ............................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<__ CS T-box 150 ............................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaA 208 U A + A+GAGGUU:UU: ++ A :AA:AACAAA U::GGUGG ACC:CG: fig|565653.4.peg.2153 762 auuuaauggcgguaucagcaaauccaucAACUGACUGCAUGAGGUUUUUUCUGUGAAGGAAAAACAAAuUGAGGUGGAACCACGUA-- 847 ****************************99999********************************8877****************7.. PP v NC ____>>>>>>>>>::: CS T-box 209 uaAUcuCGuCCcuUuu 224 U+A :CG:CC::U fig|565653.4.peg.2153 848 UUA-AACGUCCUCUGG 862 999.7*********** PP >> fig|768486.3.peg.1367 Histidine ABC transporter, permease protein [Enterococcus hirae ATCC 9790] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1e-31 122.2 0.0 cm 1 224 [] 570 800 + .. 0.97 no 0.43 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + AA :CA+ GAA::G: A+AGUA:: :::A ++ ::UU AGAGAG:C:::GG +GGUG +A:::G:UA::++ U::: ::GA fig|768486.3.peg.1367 570 UCAACGACAUCGAAAAGA-AGAGUAGCGAUUA---AAUGUUUGAAGAGAGUCUCUGGCAGGUGGAAAGAGAUAGCAGU-UAAUGGUGA 652 ******************.************9...788*************************************999.99******* PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauauaa 160 AA ++:C::GGAG: :UUU:C:GAA +A AGUA:G:AAA: CGG+ + GCCCGUUA UGAU A + A fig|768486.3.peg.1367 653 AACACAUCUUGGAGUCGAUUUUCUGAA--AUACAGUAGGAAAAUCCGGGAA-GCCCGUUACagcugcggucauuguuUGAUGACCAGA 737 ***************************..8899******************.*************************9999******* PP NC ,,,,<<<<<<<___._____>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 161 AGaGguuguuguaa.aaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + AGG U::U:U + A :A::A CAAA +A:GGUGG ACC:CG:: ++ ::CG:CC:UU fig|768486.3.peg.1367 738 UAAGGUUAGUUUCCgUGAGGGACUAGCAAAaAAAGGUGGAACCACGUA--AUU-UACGUCCUUUGG 800 **********9765588999*******7777****************9..777.9*********** PP >> fig|888064.3.peg.194 Histidine ABC transporter, permease protein [Enterococcus italicus DSM 15952] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.1e-37 143.1 0.4 cm 1 224 [] 573 805 + .. 0.96 no 0.39 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 A AAA+:CAAUGA ::G:A AAGUAA: ::: U ::UU AGAGAG:C:::GGUUGGUGAGA:::G:UA:: A +::: :UGAA fig|888064.3.peg.194 573 AGAAAUACAAUGACAAGAACAAGUAAAUUUGUU--GCUACUU-UAGAGAGUCUCUGGUUGGUGAGAAGAGAUAGUGAC-ACAAGUUGAA 657 ********************************9..6666665.8****************************777777.9********* PP NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,....................,,,,,,,,, CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu....................Ugauuauau 158 A ++:C::GGAG:+ :UU::C:GAA + +AGUA:G::AA: CGG+ GCCCGUUA +AU A + fig|888064.3.peg.194 658 ACACAUCUUGGAGUUGAUUCUCUGAA---UGAAGUAAGAGAAUUCGGGAG-GCCCGUUACagcugcagucauuugaaugaAUAUGACUC 742 **************************...999******************.*****************************99999**** PP NC ,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A +GAGGUU:UUGU + AA +CAA:AACAAA +A:GGUGG ACC:CG:: AU::CG:CC:UU fig|888064.3.peg.194 743 AUUGAGGUUUUUGUUGCAAGACAAAAACAAAaAAAGGUGGAACCGCGUA----AUUACGCCCUUUAG 805 ****************************7777****************8....448*********** PP >> fig|940190.3.peg.1639 Histidine ABC transporter, permease protein [Melissococcus plutonius ATCC 35311] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.9e-26 99.9 3.7 cm 1 224 [] 693 935 + .. 0.91 no 0.35 v v vvv vvv v NC ::::::<<------<<<<-------<<<<<<---..----<<<--....------<<<<<<___________>>>>>>>>>---.--> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauc..cuuauuuUa....cAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.aug 81 A+AA A:: AU+A G::GA AAGUAAU :: U+ + A CAGAGA ::::: +UUG+UGA+A::::: +AA ++ fig|940190.3.peg.1639 693 AAAAUACUUAUAACGCAGACAAGUAAUCUUUCUUuuUCGAA----auaaCAGAGACUUUUUCAUUGCUGAAAGAAAAGGCAAAAaGAU 776 **************************977776531233334....5555***********************9999996666664777 PP v NC >>>>>----.---->>>>--->>,,<<<<<<<____......_________>>>>>>>,<<<______>>>,,,,............. CS T-box 82 ugaauGAAa.auugCCccgGAGcaucuuucccGAAg......uuaauAgUAgggaaagaCGguuucgccCGUUAu............. 149 :: AUGAAA A +C::C A::+ :UUU:C:GAA U + A+UA:G:AAA: CGG+ C++CCGUUA+ fig|940190.3.peg.1639 777 GGAAUGAAAcACAACUGC-UAGGUCAUUUUCUGAACaaaaauUAGUGAUUAGGAAAAUGCGGAAGCUACCGUUAAccagcacaguuau 863 7789****989999***9.59**************6699**999999***************************************** PP NC ,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U A +A + A AGAG:::::U:U ++ A :A::::: AA U::GGUGG ACC:CGA: + :UCG:CC::UU+ fig|940190.3.peg.1639 864 UAACAACUGACAGAGACUAAUUUUGUGAAGAAUUGGUgAACUGAGGUGGAACCACGAA---UU-UUCGUCCUCUUA 935 99***********************************8888****************7...33.7*********** PP >> fig|1033837.3.peg.1612 Histidine ABC transporter, permease protein [Lactobacillus kefiranofaciens ZW3] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.6e-27 105.1 0.1 cm 1 224 [] 614 844 + .. 0.95 no 0.42 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 A+AA A:C + GAA::G:A AGUA:U:::: U U U A AGAGA::C:: G U GGUG +A ::G::A + + ::::A: fig|1033837.3.peg.1612 614 AAAACAACUUAGAACAGAAGCAGUAGUGUUAGU--UGCAGUAAUAGAGAGUCUUUGCU-GGUGGAAaUAAGACAUGA--GCUAGCAU 695 ********************************9..8888899************9998.777777659*****8665..4999**** PP NC ----.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,, CS T-box 87 GAAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..............Ugauuauau 158 GAA+ ++:C:: GAG: UU::::GAA +UAGUA::::AA CGG+ U GCCCGUUAU U U+A +U fig|1033837.3.peg.1612 696 GAAGuCACAUCUGUGAGUCGGUUCUUUGAA---CUUAGUAGGGGAAUCCGGGAUAGCCCGUUAUagcuaaagguugauUAUUAACUU 779 ***98899**********************...899******************************************999****** PP v v NC ,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A++GAGG::G U:+ ++ A U:A C::C AA U::GGUGG A C:CGA UA UCG:CC:: U+ fig|1033837.3.peg.1612 780 AGUGAGGCAGGUUAUGUGAGUAAUCUGCgAACaUGAGGUGGAAGCACGAU--UAG-UUCGUCCUCGUA 844 ****************************88889****************6..666.6*********** PP >> fig|1046596.4.peg.2365 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus mali KCTC 3596] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2e-28 109.8 0.0 cm 1 224 [] 713 949 + .. 0.97 no 0.43 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 A AA :: +UGA+::GG A+AGUA: ::A: + C + U::U AGAGA::C::CGGU G+UG +A G::G::::A++ :U:: : fig|1046596.4.peg.2365 713 AGAAUGAUUUUGAUUAGG-AGAGUAGUCAAUUA-CCACUCGUGAAGAGAGUCUCCGGU-GCUGGAAaGGAGACCGAAGU-GAUUGGU 795 ******************.***********998.8899********************.99*99999*********999.89***** PP v v v v NC -------->>>>--->>,,<<<<<<<____........_________>>>>>>>,<<<______>>>,,,,............,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAg........uuaauAgUAgggaaagaCGguuucgccCGUUAu............Ugau 153 GAAA ++CC:: GA:: U :: GAA U UAGUA :: A CG +U+ GC CGUUA+ UG + fig|1046596.4.peg.2365 796 GAAACACACCUAUGAAUCAAUGGAUCGAACgccacuuuUGGCUAGUAAAUUUACUCGGAUAAGCUCGUUAAagcuguugaauuUGUA 882 *****************************669*****99999*****************************************99** PP NC ,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U A+ A+GAGGU: :: ++ A :: :ACAAA U::GGUGG ACCGCG: UAA :CGUCC::UU+ fig|1046596.4.peg.2365 883 UUCAACAUGAGGUUGGUGCUGUGAGGUGCUGACAAAuUGAGGUGGAACCGCGG---UAA--UCGUCCUCUUA 949 *********************************8877****************...555..*********** PP >> fig|1046597.4.peg.372 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus zeae KCTC 3804] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.9e-25 98.3 0.0 cm 1 224 [] 345 599 + .. 0.96 no 0.54 v vv v v vv v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + AAG: UGA+::G: AAGUA :::AC + :U: AGAGA:C::: U G+UGAGA :::G::A: +A ::: GA fig|1046597.4.peg.372 345 CAUGAAGUUGUGAUUAGACCAAGUAAGCUACCA--CCGAUCCCAAGAGAGCGCCCAUU-GCUGAGAAGGCGCGAUCGACC--AGCCGA 427 **************************9987655..999****************7655.******************988..899*** PP NC --.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,......................... CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu......................... 149 A ++:C:: GA:C+U:: :C:GAA +AGUA:G: ::ACG:+ C ++:CGUUAU fig|1046597.4.peg.372 428 ACaCACAUCUAAGAACUUGAUGGCUGAA---CCAAGUAGGCUGUCACGCACCCgUUGCGUUAUcaccgcuaccagccacaguucgcgc 512 *978999*********************...899*******************999******************************** PP NC ...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 ...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G U ++ ++GAGGUU::: U ++ A + :::AACAAA U::GGUGGUACC:CGA: A +A :UCG:CC:: + fig|1046597.4.peg.372 513 aagccgacgugCGGCUGGUAGGUGAGGUUUGGGUCGUGAGAUCCAAACAAAauUGAGGUGGUACCGCGAUCACUA-AUCGCCCUCGAA 599 ***********8999999999***************************55557******************9***.************ PP >> fig|1046597.4.peg.548 Histidine ABC transporter, permease protein [Lactobacillus zeae KCTC 3804] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6e-24 92.1 0.0 cm 1 224 [] 502 728 + .. 0.95 no 0.48 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AU AAA:C++UGA :GG:A AU:: C +C+U ::UU+ AG GAG:C:G:G U G UG GA :C:G:UA:: A G ::AU fig|1046597.4.peg.548 502 AUUAAAGCGUUGAGUGGAAU---CGAUCAGCGGUCAUGAUUUUAAGCGAGUCCGGGUU-GAUGGGAaCCGGAUAGUCAUCCGUUGAUC 585 ******************43...45999999999********************9665.99999999************999999998 PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaG 164 A ++:CC: GAG: :::::::GAA ++UAGUA::::::: CG UU GC CGUUAU A +A ++ A+GAG fig|1046597.4.peg.548 586 A--CACAUCCAUGAGU-GGACGAUUGAA--CUUUAGUAGGUCGUCUCGGUUGGGCUCGUUAUcgccgugguugAAACAACUACAUGAG 668 8..8899*********.9**********..8999***************************************9999*********** PP NC <<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ::: :U: ++ A :A: :::AAA U::GGUGG ACCGCG: UAA :CGUCC::UU+ fig|1046597.4.peg.548 669 ACUGAUUGUGUGAGCAAUUGGUAAAucUGAGGUGGAACCGCGGU-UUAA-GCCGUCCUCUUA 728 **********************8877******************.5666.************ PP >> fig|1130798.3.peg.1114 Histidine ABC transporter, permease protein [Lactobacillus mucosae LM1] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.1e-27 103.0 0.0 cm 1 224 [] 601 831 + .. 0.97 no 0.51 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 A AAAA:CAA GAA::G: AGUA::U::: + C :U: + AG GA::CG: GGUUG UG GA+:CG:::A:+A++ :::A::G fig|1130798.3.peg.1114 601 ACAAAAACAAAGAACAGA-CUAGUAGCUGUUUAGCCGUCUGCUUAGCGAGUCGC-GGUUGAUGGGAAGCGACCAGAAGGCAACAGUG 685 ******************.***********************************.7788**************************** PP v v NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauuauaua 159 AA ++:C:: GAG:+ ::::: GAA ++UAGUA ::::: CGG+ + GCCCGUUA U+ +A + fig|1130798.3.peg.1114 686 AAUCACAUCUGCGAGUUGGGCGAUCGAA---UUUAGUAAGUCGCUCCGGGGAAGCCCGUUACagcacagaguuuaaaUUUGAACUCG 769 ****************************...999*******************************************9999****** PP v v NC ,,,,,<<<<<<<___._____>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaa.aaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAGG::GU::++ + A ::AC::CAA+ U::GGUGG ACC:CG A CG:CC::U + fig|1130798.3.peg.1114 770 CUGAGGCAGUUUAGCgUGAGCUGACUGCAAUgaUGAGGUGGAACCGCGG---CA---ACGCCCUCUGA 831 **********99876688889***************************4...33...4********** PP >> fig|1130798.3.peg.641 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus mucosae LM1] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.5e-30 116.6 0.0 cm 1 224 [] 698 929 + .. 0.98 no 0.48 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 +UAA G:AAUGAA::GG A+AGUA::U::C U AU::U+ AGAGAG:C:: + +G UG GA ::G:U::AU + G::A::GA fig|1130798.3.peg.641 698 UUAAUGGUAAUGAACCGG-AGAGUAGCUAUCGU--GGAUUAUUAAGAGAGUCUCGCAAAGUUGGGAAGAGAUUGAUUG-CGAUAGUGA 781 ******************.*************9..*****************************************99.********* PP v v NC ------>>>>--->>,,<<<<<<<____.._________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg..uuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGa 163 A ++CC:: GA:C : :::C:GAA+ UUA++A+UA:G::: : CG + C C CGUUAU U+ +U A A+GA fig|1130798.3.peg.641 782 ACCACACCGGUGAGCCGACCAGCUGAAAggUUAUAAUUAGGCUGCUCCGGGACCACUCGUUAUcagggcugaauUUUAUCCAGCAUGA 869 ***************************667********************************************99999********* PP v v NC ,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GG:U::::U + AA ::::A:C AA+ U::GGUGG ACC:CG: +AA :CG:CC::UUU fig|1130798.3.peg.641 870 GGAUCGUUUCGCAAGGGGCGAUCgAAUuUGAGGUGGGACCACGCG--AAA-AGCGUCCUCUUU 929 ***********************9999*****************8..888.8*********** PP >> fig|1144300.3.peg.1689 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus gastricus PS3] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5e-24 92.8 0.0 cm 1 224 [] 730 955 + .. 0.92 no 0.42 v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------.<<<<<<___________.>>>>>>>>>----->>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGA.gccggcGgUuGgUGaGA.gccgguaaauaaaugugaa 85 A+AAAAG:+AUGA ::G +AGUAA:U::: + +++ U: U AGAGA + C::: GU+G+UGA+A :::G :A+ A+U:::A: fig|1144300.3.peg.1689 730 AAAAAAGUGAUGAGUAGA-CGAGUAAGUUGAUC-UAAGUUGUCUAGAGAgUUCCCGAGUAGCUGAAAaCGGGG-UGAACAUUUCAAC 813 *****************9.************98.78888889999999963455668999*******666666.67777779***** PP v NC >-------->>>>---..>>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,, CS T-box 86 uGAAaauugCCccgGA..GcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............Ugauuauau 158 UGAA ++ C:: GA :C+ :UU::::GA + A::::AA: CG:+ GC:CGUUAU U+ U A+ fig|1144300.3.peg.1689 814 UGAACCACACCUAUGAagACUGAUUAGUUGAU-------UAAGACUAAUUCGAACG-GCUCGUUAUccccuugaacuaUUUGUUCAA 892 **************9977799**********9.......889**************.*********************999999*** PP v v NC ,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A +GAGGU:::U: ++ A :A:::AC AA U::GGUGG ACC:CG U AU CG:CC::UU fig|1144300.3.peg.1689 893 ACUGAGGUCCAUUCUGUGAGGAAUGGACgAACUGAGGUGGAACCACGA---UCAU-ACGUCCUCUUG 955 ****************************8888***************7...7885.8********** PP >> fig|1144300.3.peg.1886 Histidine ABC transporter, permease protein [Lactobacillus gastricus PS3] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.5e-23 87.5 0.5 cm 1 224 [] 600 932 + .. 0.92 no 0.41 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------.<<<<<<___________>>>>>>>>>----->>>>>. CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGA.gccggcGgUuGgUGaGAgccgguaaauaaaugugaa. 85 A A AA:C++UGA ::G: AGUA::::A: U+ A:U CAG GA G: :G: GUG+GA:C: :U A: + A+:U::: fig|1144300.3.peg.1886 600 AGAGAAACGUUGAGCAGA-CUAGUAGGAUAAUUUACCAUUGAGCAGGGAaGUUCGGAU--AGUGUGACCGGAUAAUGGUAAUUGUCg 683 ******************.*******98888886666666666*****9999999865..69*****99999999988888888877 PP NC >-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,....................... CS T-box 86 uGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu....................... 149 :GAA ++:C:: GAG:+ :UU :::GA A::: AA: CGG+UU GCCCGUUAU fig|1144300.3.peg.1886 684 CGAAUCACAUCUGUGAGUUGAUU-AUUGAU------CAAAAAU-AAUCCGGGUU-GCCCGUUAUcgcuccaaguuuauuuuuaaacu 761 9*****************65555.556666......4555555.5555******.******************************** PP NC ....................................................................................... CS T-box 150 ....................................................................................... 149 fig|1144300.3.peg.1886 762 uacugagguuagguucgugaggaucuaacaagaugagguggaaccgcggaaacgcccucuaguuguauuacaacugagggcguuuuu 848 *************************************************************************************** PP NC ............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>:: CS T-box 150 ............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUu 223 ++A +UA +GAG U::U:G+ ++ A UC:A::A AAA U:GGGUGG ACC:CG: +A :CG:CCC:UU fig|1144300.3.peg.1886 849 auuugguuauuaAAUAAACUUAUUGAGGUAAUCGAUGUGAGUCGAUUAUAAAuUGGGGUGGAACCACGUU---UA-GACGUCCCCUU 931 ************9999999******************************8877****************5...66.6********** PP NC : CS T-box 224 u 224 + fig|1144300.3.peg.1886 932 A 932 * PP >> fig|1203076.3.peg.156 Histidine ABC transporter, permease protein [Lactobacillus ingluviei str. Autruche 4] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.2e-26 100.1 0.0 cm 1 224 [] 530 858 + .. 0.97 no 0.50 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 ++A :C+A GAA::G:A AGUAA::::: U :UUU AGAGAG:C:: GGU GGUG GA ::G:UAA: ++ :::::UGA fig|1203076.3.peg.156 530 UAAGCGACGAAGAACAGAACCAGUAAAAGUUUG-GCUGAUUUCAAGAGAGUCUCGGGU-GGUGGGAAGAGAUAAUCGG-CGGCUUUGA 614 *******************************99.88899999************9999.****************999.9******** PP v v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,........................... CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu........................... 149 AA ++:C:: GAG:+ ::::C: AA :G:::: CGG+ + GCCCGUUA fig|1203076.3.peg.156 615 AACACAUCUGUGAGUUGACCACUGCAA----------AGGUGGUCCGGGGAAGCCCGUUACagcgcagaguuuagaauuugaacucgc 692 ***************999999888888..........89999999******************************************* PP NC ........................................................................................ CS T-box 150 ........................................................................................ 149 fig|1203076.3.peg.156 693 uaagguuguuuucgugaggaagcaauaagaugagguggaaccgcggcaacgcccucugaccaguuuggucgggggcguuuuuugguuc 780 **************************************************************************************** PP v v NC .......,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 .......UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G +A +U +GAGGU:: ::U + A :: ::ACAAA U:GGGUGG ACC:CG U A CG:CCC:U + fig|1203076.3.peg.156 781 ccaaauuCGCGAACUUGCUGAGGUGUUAAUCGCGAGGUUGACACAAAuUGGGGUGGAACCACGA---UCA--ACGUCCCCUGA 858 *******9999999******************************8877***************7...444..7********** PP >> fig|1267003.3.peg.2134 Histidine ABC transporter, permease protein [Lactobacillus parabrevis ATCC 53295] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.2e-27 103.7 0.0 cm 1 224 [] 601 828 + .. 0.98 no 0.51 v vv v v v v vv v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 AAAA:C++ GAA::G: A+AGUA ::C + + : :UACAGA AGCC:: G G UGA+A+::GGU: : +U G:: G fig|1267003.3.peg.2134 601 CGAAAAACGUCGAACAGA-AGAGUAAGACCAGC-GAGUGCCUACAGAAAGCCCA--GCCGAUGAAAAUGGGUGACCUUGUCCGUCCG 683 ******************.*********98766.89******************..899*******************9999***** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAG 162 AAA ++:C:: GAG:+ U: :C:GAA + UAGUA:G: :A CGG+ U GCCCGUUA U+ +A + A G fig|1267003.3.peg.2134 684 AAACACAUCUGUGAGUUGGUCGUCUGAA---UCUAGUAGGAUGAUCCGGGAUAGCCCGUUACagcuggaguugcUUGCAACUCACCG 767 ****************************...999****************************************999********** PP NC ,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 163 aGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AGG U: :: A+ AU :: :A CAAA +::GGUGG ACC:CGA: + :UCG:CC::UU+ fig|1267003.3.peg.2134 768 AGGUUAGGUCAGCGAUGGCUUAGCAAAcuAGAGGUGGAACCACGAU--GUG-AUCGUCCUCUUA 828 ************************9988*****************9..888.9*********** PP >> fig|1293592.4.peg.2438 Histidine ABC transporter, permease protein [Lactobacillus curvatus JCM 1096 = DSM 20019] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.4e-22 85.9 0.0 cm 1 224 [] 626 843 + .. 0.80 no 0.43 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 + AA:C++UGAA:GG AA AUU:A CUU :::U+CAGAGA:C G::G UGGUG +A::C G::::U+A++ U:AAUG fig|1293592.4.peg.2438 626 CAUUAAACGUUGAACGGUCCAA---AUUAAUU--CUUGAGGUUCAGAGAGCUGAUGCGUGGUGGAAGUCGGCCCUUGAGA-UUAAUG 706 ******************5542...5555555..5*******************************************55.555555 PP v v NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGa 163 ++ CC: GAG:+U::U:::CGAA AG:::A:: CG U C CGUUAU U ++A ++ A+ A fig|1293592.4.peg.2438 707 G--CACAACCGUGAGUUUGAUCAUCGAA------UAAAGAUGAUC-CGUUAG--CCCGUUAUcgcuguaguuuUAGAAACUACAUAA 782 3..7777*********************......999********.996654..6799***99999998888855555555555555 PP vv vv v v NC ,<<<<<<<___.._____>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 Gguuguuguaa..aaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G U:: :U+ A +: ::A AAA U::GGUGG ACCGCGA +AA UCGUCC::UU fig|1293592.4.peg.2438 783 GUUUAAGCUGCguGAGCAGUUUAUUAAAcUGAGGUGGCACCGCGAU--AAA-UUCGUCCUCUUG 843 55555444333332222345555556666****************7..888.7*********** PP >> fig|1392007.3.peg.359 Histidine ABC transporter, permease protein [Lactobacillus equi DPC 6820] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.9e-26 99.6 0.0 cm 1 224 [] 715 959 + .. 0.93 no 0.44 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------.<<<<<<____.._______.>>>>>>>>>----->>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGA.gccggcGgUu..GgUGaGA.gccgguaaauaaauguga 84 A AAA :CA+ GAA::G: A+AGUA:U:: : + CU+ U: AGAGA :C:G: G+UG++A :C:G: :A+ A+ : :: fig|1392007.3.peg.359 715 ACAAAGACAUCGAAUAGA-AGAGUAGUAGGACCGCUAUUAGACUAGAGAaUUCUGAUCACcgGCUGUAAgUCAGAAAUAAUAUGUGCU 801 ******************.*************97777777777*****99555555444459*******65555558888889***** PP NC >>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,....................... CS T-box 85 auGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu....................... 149 A:GAA ++:C::GGAG:+ : :::::GAA ++UAGUA::::: : CGGU +GCCCGUUA fig|1392007.3.peg.359 802 AUGAACCACAUCUAGGAGUUGUUAAUUUGAA--CUUUAGUAGGAUUGACCGGUCGUGCCCGUUACuacacagacuuaucgccaauggc 887 *******************************..8999*************************************************** PP NC ,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UGAU+A +UA +GAG::U:U::U ++ A +::A:A:: A+U::GGUGGUACC: G:: + ::C :CC::UU fig|1392007.3.peg.359 888 UGAUAAGUUACUGAGCCUAUUUUCGUGAGAAGAUAGGgCAUUGAGGUGGUACCGUGCG---UU-UGCGCCCUCUUG 959 *************************************999*****************6...44.6*********** PP >> fig|1423779.3.peg.1195 Histidine ABC transporter, permease protein [Lactobacillus oris DSM 4864] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.6e-30 116.2 0.0 cm 1 224 [] 575 931 + .. 0.97 no 0.52 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +AA :CAAUGAA::G: AGUAA::: C U CU+ ::: + AGAGA::C:: G U GGUG GA ::G:::::U AA+G :::UG fig|1423779.3.peg.1195 575 CAAAUGACAAUGAACAGA-CUAGUAAAGUGCUU-CUAGCAGCUAAGAGAGUCCAGGCU-GGUGGGAAUGGACCUGUUAAAGUACUUG 658 ******************.*************9.9*******************6655.**************************** PP vv vv NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,......................... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu......................... 149 AA ++:C:: GAG:+ ::: C:GAA UAGUA:G ::: CGG+ UCGCCCGUUA fig|1423779.3.peg.1195 659 AAUCACAUCUGUGAGUUGACCUUCUGAA--GCCUAGUAGGUUGGUCCGGGGUCGCCCGUUACagcacggaguuuaucauaaugaacu 743 ****************************..6788***************************************************** PP NC ....................................................................................... CS T-box 150 ....................................................................................... 149 fig|1423779.3.peg.1195 744 cgcuaaggccaguuaccgugagggacuggcaagaugagguggaaccgcggaaacgcccucggagccaaauuggcucggggguguuuu 830 **************************************************************************************9 PP v v v NC ............................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_ CS T-box 150 ............................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGaga 207 +A +UA GAGG::G :G ++ A C: C::CAAA U::GGUGGUACC:CGA fig|1423779.3.peg.1195 831 uguuuuccagcgaggugggcgcagacauGAUGAACUUACCGAGGCGGGUGCUGUGAAGCGGCCGCAAAcUGAGGUGGUACCACGAU- 916 99999999999999999999999999987788888999999999999999999************9998****************8. PP v NC _____>>>>>>>>>::: CS T-box 208 AuaAUcuCGuCCcuUuu 224 U A UCG:CC::U fig|1423779.3.peg.1195 917 -UGA-UUCGUCCUCUAG 931 .999.8*********** PP >> fig|525309.3.peg.1796 Histidine ABC transporter, permease protein [Lactobacillus antri DSM 16041] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.3e-28 108.6 0.0 cm 1 224 [] 574 931 + .. 0.98 no 0.51 vv vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 +AA :CAAUGAA::G: AGUAA::::: U +U+A :: A AGAGA::C: UUGGUG +A :G:::: U +A+:::::UGA fig|525309.3.peg.1796 574 CAAAUGACAAUGAACAGA-CUAGUAAGGUGUUU-UUAAUAGCAAAGAGAGUCCGCA-UUGGUGGAAAAGGACCUGUUGAAGCACCUGA 658 ******************.*************9.99*****************865.55***************************** PP vv vv NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,........................... CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu........................... 149 A ++:C:: GAG:+ ::: C:GAA UAGUA:G ::: CGG+ UCGCCCGUUA fig|525309.3.peg.1796 659 AUCACAUCUGUGAGUUGACCUUCUGAA--GCCUAGUAGGUUGGUCCGGGGUCGCCCGUUACagcacggaguuuaucaagaugaacuca 744 ***************************..6788******************************************************* PP NC ........................................................................................ CS T-box 150 ........................................................................................ 149 fig|525309.3.peg.1796 745 caaaggucagcugccgugagggguugacaagaugagguggaaccgcggaaacgcccucguagccaauuuggcucggggguguuuuuau 832 **************************************************************************************** PP v v v NC ..........................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<____ CS T-box 150 ..........................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAua 210 +A +UA GAGG::G :G ++ A C: C::CAAA +::GGUGGUACC:CGA U fig|525309.3.peg.1796 833 uuaccuagcguugugagugcgagacuGAUGAACUUACCGAGGCGGGUGCUGUGAAGCGGCCGCAAAcAGAGGUGGUACCACGAU--UG 918 *************************988889999999**************************9998****************8..99 PP v NC __>>>>>>>>>::: CS T-box 211 AUcuCGuCCcuUuu 224 A UCG:CC::U fig|525309.3.peg.1796 919 A-UUCGUCCUCUAG 931 9.8*********** PP >> fig|525318.3.peg.1881 Histidine ABC transporter, permease protein [Lactobacillus buchneri ATCC 11577] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-28 110.1 0.9 cm 1 224 [] 614 845 + .. 0.95 no 0.38 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 ++AAA :C AUGA+::G: A AGUAA :C:: UUA::UU+CAGA A:C :::G+U G UG GA ::: G:A::U+A +::G:+UG fig|525318.3.peg.1881 614 UAAAAGACUAUGAUCAGA-AUAGUAA-ACCAUG--UUAAAUUUCAGAAAACUCAUGAU-GAUGGGAaAUGGGUAUUUGA-AUGGUUUG 695 ******************.9999965.566666..999*****************999.99999999***********9.66777889 PP v v NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauaua 159 ++:C::GGAG: :UUUCC:GAA + +AGUA:GGAAA: CG U + GC CGUUAU U ++A + fig|525318.3.peg.1881 696 CGUCACAUCUGGGAGUCAUUUUCCUGAA---UGAAGUAGGGAAAAGCGGUGA-GCACGUUAUugcugaaguuuaguuuUCUAAACUCG 779 999*************************...999**************9999.99**********************99999999999 PP NC ,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAG::U:U::+ A+ A U::A:A:: AA U::GGUGG ACCGCGA:+A++A :UCGUCC::UU+ fig|525318.3.peg.1881 780 UUGAGACUUUUCAUAUGAAUGGAAAGUgAAGcUGAGGUGGAACCGCGAUUAAUA-AUCGUCCUCUUA 845 ***************************87779*****************99999.************ PP >> fig|525318.3.peg.2571 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus buchneri ATCC 11 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-25 98.6 0.0 cm 1 224 [] 610 872 + .. 0.95 no 0.44 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A+ AAAG: +UGA+::G:A AAGUAA ::: U A:U:UA AGAGA:: :: G UG+UGAGA+:: :::A:U ::: UGA fig|525318.3.peg.2571 610 AAUAAAGUUUUGAUUAGAAGAAGUAAUCGGCUG--UGAAUGUAAAGAGAGUUCC--GCUGCUGAGAAGGGACCAUUCC-GACCGGUGA 692 ******************************988..*******************..899*****************99.678****** PP NC --.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,......................... CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu......................... 149 AA ++:C:: GA:C+ UU::::GAA A AGUA::::AA CG:+ + ++:CGUUAU fig|525318.3.peg.2571 693 AAaCACAUCUAUGAACUAGUUGAUUGAA---CAGAGUAGAUCAAUUCGCAAGUuUAGCGUUAUcaggguuaccgcaacuguuaucggg 777 998999**********************...899*****************9999********************************* PP v v NC ...................,,,,,,,,,,,,,,,<<<.<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>> CS T-box 150 ...................UgauuauauaaAGaGguu.guuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCG 216 UG U A+ ++ AGG:: :U:U ++ A :A: ::CAAA U: GGUGG ACCGCGA +A+AA UCG fig|525318.3.peg.2571 778 cauuugucugcugaguaguUGUUGGCAACGUAAGGCAaUCUAUCGUGAGGUAGGUGCAAAuUGGGGUGGAACCGCGAUUAAAA-UUCG 864 *****************99888888888888888885488888889999999999997777*****************99999.**** PP NC >>>>>::: CS T-box 217 uCCcuUuu 224 UCC : fig|525318.3.peg.2571 865 UCCUCGAG 872 ******** PP >> fig|525325.3.peg.510 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus fermentum ATCC 14 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.7e-23 87.9 0.3 cm 1 224 [] 728 954 + .. 0.96 no 0.62 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 A+A AG:AA GA ::GG A+AGUA: :::: U :: CAGAGAG:CG:CGG G+UG GA G:CG:U:: :::: :GA fig|525325.3.peg.510 728 AAAUGAGUAAGGACCAGG-AGAGUAGGAGUGGG-GCUCCCAAGCAGAGAGUCGCCGGC-GCUGGGAuGGCGAUUGACCC-CCGCUUCGA 812 ******************.*************9.677778899**************9.**************887666.********* PP v v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,,,,< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAGaGg 165 A ++CC::GGA:C+ : :::C:GAA AGUA:G::: : CGG+ C CCCGUUA U U A+ ++GAG fig|525325.3.peg.510 813 ACCACACCUGGGAACUGGACGGCUGAA---CGGAGUAGGUCGGCCCGGGACCACCCGUUAGcaggguugaaguUAGCUUCAACGUGAGG 898 ***************************...889****************************************9999************ PP NC <<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 166 uuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ::::U:U ++ A :A:::: AA ::GGUGG ACC:C : U U : G:CC::UU fig|525325.3.peg.510 899 CCCCUUUCGUGAGGGAGGGGUgAACGGAGGUGGAACCGCGC---UCCU-GUGCCCUCUUG 954 *********************8888**************99...6676.99********* PP >> fig|525325.3.peg.920 Histidine ABC transporter, permease protein [Lactobacillus fermentum ATCC 14931] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.1e-23 88.2 0.0 cm 1 224 [] 604 932 + .. 0.96 no 0.53 v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 A AA :CA+UGA ::G AGUA:::C: :U +CAG GA:::::CGGU GGUG GA G:::::A: + :G:::GA fig|525325.3.peg.920 604 ACAACGACAUUGAGCAGA-UUAGUAGAACGAUG--CGUGCUAUCAGCGAGUAACCGGU-GGUGGGAaGGUUACAGUACU-CCCGUUCGA 687 *****************6.************99..99999******************.88888888********9988.889****** PP v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............................ CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............................ 149 A ++ C:: GAG: U: :::C:GA A A:G::: : CGG+ + GCCCGUUA fig|525325.3.peg.920 688 AUCACAACUGUGAGU-UGGCCACUGAC-----CAAAAGGUGGUC-CGGGGAAGCCCGUUAGcgcgcaaaguuuacaauucgugaacuua 769 ***************.66777788887.....577777777776.******************************************** PP NC ......................................................................................... CS T-box 150 ......................................................................................... 149 fig|525325.3.peg.920 770 cugaggucgucuuccgugagggggcgacaagaugagguggaaccgcggcaacgcccucuuagccaaguggcuaggagggcguuuugucu 858 ***************************************************************************************** PP NC ..,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 ..UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UG ++A +U +GAG UU:::: ++ A ::::AA AA U:GGGUGG ACC:CG AA CG:CCC:UU fig|525325.3.peg.920 859 uuUGUAAACUUGCUGAGGUUACCAGUGUGAGCUGGUAAUgAACUGGGGUGGAACCACGUU---AA-GGCGUCCCCUUG 932 **99***********************************8888***************95...66.6*********** PP >> fig|525327.3.peg.1192 Histidine ABC transporter, permease protein [Lactobacillus hilgardii ATCC 8290] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.1e-29 111.7 0.8 cm 1 224 [] 613 844 + .. 0.95 no 0.38 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 ++AAA :C AUGA+::G: A AGUAA :C:: UUA::UU+CAGA AGC :::G+U G UG GA ::: GUA::U+A +::G:+UG fig|525327.3.peg.1192 613 UAAAAGACUAUGAUCAGA-AUAGUAA-ACCAUG--UUAAAUUUCAGAAAGCUCAUGAU-GAUGGGAaAUGGGUAUUUGA-AUGGUUUG 694 ******************.9999965.566666..999*****************999.99999999***********9.66777889 PP v v NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauaua 159 ++:C::GGAG: :UUUCC:GAA + +AGUA:GGAAA: CG U + GC CGUUAU U ++A + fig|525327.3.peg.1192 695 CGUCACAUCUGGGAGUCAUUUUCCUGAA---UGAAGUAGGGAAAAGCGGUGA-GCACGUUAUugcugaaguuuaguuuUCUAAACUCG 778 999*************************...999**************9999.99**********************99999999999 PP NC ,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAG::U:U::+ A+ A U::A:A:: AA U::GGUGG ACCGCGA:+A++A :UCGUCC::UU+ fig|525327.3.peg.1192 779 UUGAGACUUUUCAUAUGAAUGGAAAGUgAAGcUGAGGUGGAACCGCGAUUAAUA-AUCGUCCUCUUA 844 ***************************87779*****************99999.************ PP >> fig|525327.3.peg.2273 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus hilgardii ATCC 8 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.1e-25 99.2 0.0 cm 1 224 [] 610 872 + .. 0.95 no 0.44 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A+ AAAG: +UGA+::G:A AAGUAA ::: + U A:U:UA AGAGA:: :: G UG+UGAGA+:: :::A:U ::: UGA fig|525327.3.peg.2273 610 AAUAAAGUUUUGAUUAGAAGAAGUAAUCGGCUC--UGAAUGUAAAGAGAGUUCC--GCUGCUGAGAAGGGACCAUUCC-GACCGGUGA 692 *****************************9887..*******************..899******************9.6689***** PP NC --.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,......................... CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu......................... 149 AA ++:C:: GA:C+ UU::::GAA A AGUA::::AA CG:+ + ++:CGUUAU fig|525327.3.peg.2273 693 AAaCACAUCUAUGAACUAGUUGAUUGAA---CAGAGUAGAUCAAUUCGCAAGUuUAGCGUUAUcaggguuaccgcaacuguuaucggg 777 998999**********************...899*****************9999********************************* PP v v NC ...................,,,,,,,,,,,,,,,<<<.<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>> CS T-box 150 ...................UgauuauauaaAGaGguu.guuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCG 216 UG U A+ ++ AGG:: :U:U ++ A :A: ::CAAA U: GGUGG ACCGCGA +A+AA UCG fig|525327.3.peg.2273 778 cauuugucugcugaguaguUGUUGGCAACGUAAGGCAaUCUAUCGUGAGGUAGGUGCAAAuUGGGGUGGAACCGCGAUUAAAA-UUCG 864 *****************99888888888888888885488888889999999999997777*****************99999.**** PP NC >>>>>::: CS T-box 217 uCCcuUuu 224 UCC : fig|525327.3.peg.2273 865 UCCUCGAG 872 ******** PP >> fig|525337.3.peg.199 Histidine ABC transporter, permease protein [Lactobacillus paracasei subsp. paracasei ATCC 2530 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.6e-24 92.0 0.0 cm 1 224 [] 424 649 + .. 0.93 no 0.49 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 AU AAA:C++UGA :GG:A AU :A: +C U U:UU AG GAG:C:G:G+U G UG GA :C:G:UA:A A :U: AU A fig|525337.3.peg.199 424 AUUAAAGCGUUGAGUGGAAUC---GAUGAAUGGUCGUGUCUUGAAGCGAGUCCGGGAU-GAUGGGAaCCGGAUAGACAUCCAUUGAUCA 508 ******************444...355566666689*******************999.99999999**********997766666655 PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGgu 166 ++:CC: GAG: :::::::GAA +AGUA::::::: CG UU GC CGUUAU GAU+A ++ A+GAGGU fig|525337.3.peg.199 509 --CACAUCCACGAGU-GGACGAUUGAA---CGAAGUAGGUCGUCUCGGUUGGGCUCGUUAUcgccgugguugAGAUAACUACAUGAGGU 591 ..8899*********.9**********...899***************************************99*************** PP NC <<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 167 uguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U: :: ++ A :: :AACAAA U::GGUGG ACCGCG: A+AA :CGUCC::UU+ fig|525337.3.peg.199 592 UAGCUGUGUGAGCAGUUAACAAAucUGAGGUGGAACCGCGGU-AAAA-GCCGUCCUCUUA 649 ********************8877******************.6777.************ PP >> fig|525337.3.peg.34 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus paracasei subsp. p rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4e-30 116.3 0.0 cm 1 224 [] 621 875 + .. 0.97 no 0.47 vv vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>---- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAa 90 + AAG: UGA+::G:A AAGUAA:::++ + U :U: ACAGAGA:C:::: U G+UGA+A::::G::A:UA+ :::UGAA fig|525337.3.peg.34 621 CAUGAAGUUGUGAUUAGAACAAGUAAGCUGAUC--CUGAUCAACAGAGAGCGUCUAUU-GCUGAAAAGACGCGAUUAGCC--AGCUGAAC 705 ******************************988..999*****************877.******************977..*******9 PP v v NC .---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,............................. CS T-box 91 .auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu............................. 149 ++:C:: GA:C+U: : :C:GAA ++AGUA:G: : :ACG:+U C ++:CGUUAU fig|525337.3.peg.34 706 aCACAUCUAUGAACUUGCCGGCUGAA---CUAAGUAAGCUGUCACGCAUCCgUUGCGUUAUcacugcugccaacugcuguucgcaauugc 792 8999**********************...899*******************99************************************* PP v v NC .......,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 .......UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U UU + ++GAGGUU::: U + AA + :::AACAAA U::GGUGGUACC:CG:: A+AA ::CG:CC:: + fig|525337.3.peg.34 793 ugacaguUACUUGGCAGGUGAGGUUUAGGUCGCAAGAGCUAAACAAAauUGAGGUGGUACCGCGGUCAAAA-AUCGCCCUCGGA 875 *******99***********************************55557*****************99999.************ PP >> fig|575594.3.peg.1045 Histidine ABC transporter, permease protein [Lactobacillus coleohominis 101-4-CHN] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.2e-23 89.3 0.0 cm 1 224 [] 616 838 + .. 0.92 no 0.40 v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 +UAAA :C+A GA ::G AGUA::::A U U ::UUACAGA A:: ::G U+G+UGAGA:: ::A::+A + U::::GA fig|575594.3.peg.1045 616 UUAAAGACGAAGAGCAGA-CUAGUAGAGUAAUU-GGUUCUUUACAGAAAGUUUCAG-UAGCUGAGAUGGGACAUGAACUGGUACUUGA 700 *****************6.***********998.9999****************96.55***************************** PP v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.............,,,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.............UgauuauauaaAGa 163 A ++ C:: GAG: U:::U:::GA A A:::A::: CGG+ + GCCCGUUA U+ +A +U +GA fig|575594.3.peg.1045 701 AUCACAACUGUGAGU-UGACUAUUGAU-----CAAAAAAUAGUC-CGGGGAAGCCCGUUACagcgcagaguuuaUUUGAACUUGCUGA 781 ***************.55666667777.....566666666665.*****************************9999********** PP v v NC ,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GGUU: ::U ++ A +:: :AACAA+ U::GGUGG ACC:C UAA G:CC::UU+ fig|575594.3.peg.1045 782 GGUUAGAUUCGUGAGAAUUUAACAAUaaUGAGGUGGAACCGCUG---UAA---AGCCCUCUUA 838 ***********************99999*************954...333...49******** PP >> fig|575595.3.peg.1366 Histidine ABC transporter, permease protein [Lactobacillus crispatus 125-2-CHN] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.9e-31 118.5 0.5 cm 1 224 [] 610 842 + .. 0.96 no 0.38 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 A+AA A:C + GAA::G:AA AGUAAU:C:: U +A: U A AGAGAG:C:: G U GGUG +A ::G:UA :U+ ::G:AUG fig|575595.3.peg.1366 610 AAAACAACUUAGAACAGAAAUAGUAAUACUAGU--CAAAGUAAUAGAGAGUCUUUGCU-GGUGGAAaUAAGAUAUUUG--CUAGUAUG 692 ********************************9..999*****************998.777776669******9998..899***** PP v v NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauuauauaa 160 AA ++:C:: GAG:+ U U:C:GAA AA+AGUA:G:A A CGG+ U GCCCGUUAU + +A +UA fig|575595.3.peg.1366 693 AAUCACAUCUGUGAGUUGGUCUUCUGAA--CAAAAGUAGGAAAAUCCGGGAUAGCCCGUUAUagcuaaagguugauuAUUGAACUUAU 778 ****************************..99********************************************989999999*** PP v v NC ,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 161 AGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAG ::: U: ++ A :A ::: AAA U::GGUGG ACC:CGA UA UCG:CC:: U+ fig|575595.3.peg.1366 779 UGAGGCAAGUUGCGUGAGCAAUUUGUAAAcaUGAGGUGGAACCGCGAU--UACAUUCGCCCUCGUA 842 **************************8888*****************8..44448*********** PP >> fig|695560.3.peg.1851 Histidine ABC transporter, permease protein [Lactobacillus amylovorus GRL 1112] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.5e-25 97.5 0.0 cm 1 224 [] 615 955 + .. 0.95 no 0.44 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 A+AA A:C + GAA::G:A AGUA:U:C: AU U A AGAGA::::: G+U GGUG +A :::::A + :G:A:G fig|695560.3.peg.1851 615 AAAACAACUUAGAACAGAAGCAGUAGUACCUAU--CGCAGUAAUAGAGAGUUUCUGAU-GGUGGAAaUGAAACAUA--CGCUGGUAUG 697 ********************************9..66677899************999.77766665999999754..469******* PP v v NC ---.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,........................ CS T-box 88 AAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu........................ 149 AA+ ++:C:: GAG:+ UU::C:GAA A +AGUA:G::AA CGG+ U+ GCCCGUUA fig|695560.3.peg.1851 698 AAGuCACAUCUGCGAGUUGAUUUUCUGAA---ACAAGUAGGAGAACCCGGGGUUaGCCCGUUACagcuaaagguugauuaucgaacuu 782 **98899**********************...999***************99999********************************* PP NC ........................................................................................ CS T-box 150 ........................................................................................ 149 fig|695560.3.peg.1851 783 auugaggcagacugcgugagcaguuuguaaacaugagguggaaccgugauuucauucgcccucguagccaauuaggcuaugggggcuu 870 **************************************************************************************** PP v v NC ............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>:: CS T-box 150 ............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUu 223 +A UA++GAGG:: UU ++ A AA ::CAAA U::GGUGG ACC:CGA + A UCG:CC::UU fig|695560.3.peg.1851 871 uuucuuuucgauCAUCAACCUAGUGAGGCAUUUUGCGUGAG-CAAGUGCAAAcaUGAGGUGGAACCACGAU--ACA-GUCGUCCUCUU 954 ***********988899999**********99986666554.5899***8888*****************9..999.9********** PP NC : CS T-box 224 u 224 + fig|695560.3.peg.1851 955 A 955 * PP >> fig|913848.6.peg.836 Histidine ABC transporter, permease protein [Lactobacillus coryniformis subsp. coryniformis KCT rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.7e-33 128.3 0.3 cm 1 224 [] 606 834 + .. 0.97 no 0.38 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 ++AA A:C++UGAA::G: A+AGUAA:U : U U+A:UU +CAGAGA::::::GG UGGUG+GA::::::AA:U+A : A:UGAA fig|913848.6.peg.836 606 UAAAUAACGUUGAACAGA-AGAGUAAAUGGACU--UAAAUUAUCAGAGAGUUUCUGGAUGGUGUGAAGAAACAAUUGA-GUGUAUUGAA 690 ******************.***********998..*******************************************.667******* PP NC ----->>>>--->>,.,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<< CS T-box 90 aauugCCccgGAGca.ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGgu 166 A ++:C:: GAG:A U:U:::C:GAA A+A+UA:G:::A:ACGG+ + GCCCGUUA + +A ++ +GAGGU fig|913848.6.peg.836 691 ACACAUCUGCGAGUAuUGUACGCUGAA---CAAAUUAGGUGUACACGGGAAAGCCCGUUACugcuguaguucAUUGAACUACCUGAGGU 776 **************999**********...899***************************************88999999999****** PP v v NC <<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 167 uguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 :: :U ++ A +: ::ACAAA +::GGUGG A C:CGA AU A UCG:CC::UU fig|913848.6.peg.836 777 AUUGCUUGUGAAAGUGAUACAAAuuAGAGGUGGAAUCACGAA-AUCA-AUCGUCCUCUUG 834 ********************8777*****************8.8888.8*********** PP >> fig|930942.3.peg.685 Histidine ABC transporter, permease protein [Lactobacillus animalis KCTC 3501] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.7e-28 108.0 0.0 cm 1 224 [] 707 940 + .. 0.96 no 0.44 NC ::::::<<------<<<<-------<<<<<<-------<<<--..------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUa..cAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 +UAA ::A+ GA :GG: A+AGUA::: A: U UUA::U A AGAGA ::::CGG +G+UGA+A G:::: A::U++ :U ::: fig|930942.3.peg.685 707 UUAACGAUAUCGAGCGGA-AGAGUAGAAGAUGU--UUACCUGAaaAAGAGACUAUCCGGGAGCUGAAAaGGAUAGAGGUGG-CAUUUUU 791 ******************.*************9..899999776699****************************999999.******* PP NC -------->>>>--->>,,<<<<<<<____.._________>>>>>>>,<<<____..__>>>,,,,..........,,,,,,,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAg..uuaauAgUAgggaaagaCGguuuc..gccCGUUAu..........UgauuauauaaA 161 GAA ++:CC: GA::+ U:::C:GAA + A AGUA:G:::A CGGU + G+CCGUUA G U+A + A + fig|930942.3.peg.685 792 GAACCACAUCCGUGAAUUGGUACACUGAACcuAAAGCAGUAGGUGUAUCCGGUCAGaaGUCCGUUACacuugaguuaAGUUAACUCACU 880 *****************************5569999*****************9999999*****************999********* PP NC ,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 162 GaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GAG::U::U:U ++ A +:A::A::AAA U::GGUGG ACC:CG: +AA :CG:CC::UU fig|930942.3.peg.685 881 GAGACUCCUUUUGUGAGAAAGGAGUAAAuaUGAGGUGGAACCGCGU---AAA--ACGCCCUCUUG 940 *************************8777****************9...777..9********** PP >> fig|936140.3.peg.2058 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus farciminis KCTC rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.2e-32 124.4 0.0 cm 1 224 [] 714 938 + .. 0.97 no 0.44 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 AUAAAA::AAUGA+::GGAAAAGUA: U:AC + + ::UUACAGAGA::::::GG +G GA+A::::::A:: GU:A :GA fig|936140.3.peg.2058 714 AUAAAAAUAAUGAUUAGGAAAAGUAGUUGACCC--GACCUUUACAGAGAGUUCUUGGCAGUGGAAAGAGAACAUGGU--GGUCAGUGA 797 *****************************9998..999********************99999999*********98..799****** PP NC --.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.........,,,,,,,,,,,,,,,<< CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.........UgauuauauaaAGaGgu 166 A ++CC:: GA::+ C: ::C:GAA A+AGUA:G:: :G CG:U ++:CGUUAU + + A+ ++GAGGU fig|936140.3.peg.2058 798 AUcCACACCUAUGAAUUGCAGAGCUGAA---CAAAGUAGGCUUUGCCGAUCGGUUUCGUUAUccgaguugaCUCAGCCAACGUGAGGU 882 *99999**********************...999************************************988889999999****** PP v v NC <<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 167 uguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ::::: + AA :::::AC AAAU::GGUGG ACCGCG : +A : CGUCC::UU+ fig|936140.3.peg.2058 883 UUAAUCCGCAAGGGUUAGACgAAAUGAGGUGGAACCGCGCA--AAU-UACGUCCUCUUA 938 ********************9999****************9..666.9*********** PP >> fig|936140.3.peg.398 Histidine ABC transporter, permease protein [Lactobacillus farciminis KCTC 3681] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.2e-29 112.5 0.0 cm 1 224 [] 630 850 + .. 0.97 no 0.42 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 ++AAAA:C+A GA ::G: A+AGUA : A: U ++ U::U CAGAGA::C::CG U GGUG GAG::G::::A :U : GAA fig|936140.3.peg.398 630 UAAAAAACGACGA-CAGA-AGAGUAACUGAGUU--AACUAGUCCAGAGAAUCAACGUU-GGUGCGAGUUGAUCUAGU--CCUUGGCGAA 711 ********88876.9***.*************9..999*****************988.****************87..9********* PP NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<<< CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGguu 167 A ++:C:: AG:+ ::U::::GAA + +AGUA::::A:: CGGU +CCGUUA+ U+ U+A +U ++GAG::U fig|936140.3.peg.398 712 ACACAUCUGUAAGUUGAAUGAUUGAA---UCAAGUAGGUCAUUUCGGUAG-CACCGUUAAagcugaaguuaUUGUAACUUCGUGAGCCU 796 **************************...999******************.99******************99**************** PP NC <<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 168 guuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ::U:U ++ A :A::A::AA +::GGUGG ACC:CGA: +A :UCG:CC::UU+ fig|936140.3.peg.398 797 AAUAUCGUGAGGUAUUAGGAACcAGAGGUGGAACCGCGAA---UA-UUCGCCCUCUUA 850 ***************************************6...56.6*********** PP >> fig|1045004.4.peg.1669 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Oenococcus kitaharae DSM 1733 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-30 118.0 0.0 cm 1 224 [] 723 955 + .. 0.97 no 0.40 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 A AAAA::AAUGA+::G: A+AGUA:UU::C + C U:: A AGAGAG: ::CG G+UG +A G:: :U::A + G::AA: fig|1045004.4.peg.1669 723 ACAAAAAUAAUGAUUAGA-AGAGUAGUUAUCGA-CCGCUCACAAAGAGAGUUCCCGCC-GCUGGAAaGGGGAUUGACGU-GGAUAAC 805 ******************.************99.8899*****************877.***99999*********999.9****** PP NC -------->>>>--->>,,<<<<<<<____........_________>>>>>>>,<<<______>>>,,,,........,,,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAg........uuaauAgUAgggaaagaCGguuucgccCGUUAu........Ugauuaua 157 GAAA ++:C:: GA::+ :U: :C:GAA+ U+ A+UA:G: :A: CG:U G :CGUUAU U+ +U A fig|1045004.4.peg.1669 806 GAAACACAUCUAUGAAUUAAUAGACUGAAAgagcagcuGUUCGAUUAAGUUUAUUCGAUCG-GGUCGUUAUcccguugaUUUAUUCA 891 *****************************779******999*******************9.99***************999***** PP NC ,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 158 uaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + A+GAGGUU::U:U + A +:A::AAC AA+U::GGUGG ACC:CG: U+AU :CG:CC::UU+ fig|1045004.4.peg.1669 892 ACAUGAGGUUUAUUUCGCGAGAAAUAAACgAAUUGAGGUGGAACCACGG---UUAU-UCGUCCUCUUA 955 *****************************9999****************...7887.*********** PP >> fig|1045854.4.peg.1202 Histidine ABC transporter, permease protein [Weissella koreensis KACC 15510] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1e-18 71.9 0.1 cm 1 224 [] 711 946 + .. 0.87 no 0.39 v vvvv v v vvvv NC ::::::<<-----.-<<<<-------<<<<<<-------<<<--------<<<<<<____._______>>>>>>>>>----->>>>> CS T-box 1 auaAAagCaaUgA.aggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu.GgUGaGAgccgguaaauaaaugugaa 85 ++AA +::A+U A A::G A+AGUA: U ++ UU: +CAGAGAG::G: + G UGAGA :C::U:AA+ ++ fig|1045854.4.peg.1202 711 UAAAUUAAAUUCAcAUAGA-AGAGUAGGUCGUUU--AAUUUGCUCAGAGAGUUGCGCUGAaGUUGAGAAGCAAUCAAAUUGAUGAUU 794 ***********88466666.*******9877777..9******************655558******************96665669 PP v v v NC >-------->>>>--->>,...,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.................... CS T-box 86 uGAAaauugCCccgGAGca...ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.................... 149 :GAA ++ C:: G :: :::::: AA :::::: CG U +C CGUUAU fig|1045854.4.peg.1202 795 CGAACCACACCUAUGUUUGuuuGAAAAUUGUAA----------UGAUUUUUCGGCUGAUCGCGUUAUagauucccgccauuauguua 871 9****8888777777777744355555555555..........66677889***********************************9 PP v v NC ,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +A U + AGAG::U :::UA++AAU+::: A::AAA U::GGUGG ACC:CGA U+ UCG:CC:: fig|1045854.4.peg.1202 872 AUAGUGGUGGCAGAGUGUGCGUUAGUAAUAGCGUACAAAAauUGAGGUGGAACCACGAA--UUCGAUCGUCCUCAAG 946 99999999999**************************55557****************7..55547*********** PP >> fig|1046595.4.peg.1954 Histidine ABC transporter, permease protein [Lactobacillus suebicus KCTC 3549] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.3e-27 102.5 0.0 cm 1 224 [] 593 824 + .. 0.96 no 0.46 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 ++AAAA:C+AUGAA::G: A AGUA: U: U U : ACAGAGAGC :::G UUG+UGAGA ::: GU : + ++ :A : fig|1046595.4.peg.1954 593 UAAAAAACGAUGAACAGA-AUAGUACGUUGGUU-GGUUAAAGACAGAGAGCUUCGG-UUGCUGAGAgCGAGGUAUGACUGAUGAAUG 676 ******************.************98.555556678**********995.55*******99*****88888899****** PP NC -------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuaua 157 GAA ++:C:: GAG:+ :U UCC:GAA ++UAGUA:GGA A: CGG+ + CCCGUUA+ ++A + fig|1046595.4.peg.1954 677 GAAUCACAUCUGUGAGUUAGUUUCCUGAA---UUUAGUAGGGAGACUCGGGAAGCCCCGUUAAcacguugaguuugaugAACAAACU 760 *****************************...999********************************************99999*** PP v v NC ,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 158 uaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U +GAG :UG :U ++ A +: CA: AA U::GGUGG ACC:CG: ++A :CG:CC:: + fig|1046595.4.peg.1954 761 UGCUGAGUCUGUGCUUGUGAAAGUGCAGUAACguUGAGGUGGAACCGCGG---AUA--UCGCCCUCGCA 824 *************************************************9...777..9********** PP >> fig|1046595.4.peg.394 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus suebicus KCTC 35 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.2e-19 74.7 0.0 cm 1 224 [] 709 947 + .. 0.88 no 0.44 vvv vvv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____..._______..>>>>>>>>>----->>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu...GgUGaGA..gccgguaaauaaaugug 83 +UAAAAG: +UGAA::G AGUA::: C++ :U: CAG GAG:::::G + UG +A :::::U:A: fig|1046595.4.peg.394 709 UUAAAAGUUUUGAAUAGU-UUAGUAGACACGGGGCAACGUACCCAGGGAGUUUUGGCCAucgAUUGCAAgcCAAAAUUACGUUCCGCG 795 *****************9.*********888888********************998877777888888889***********66667 PP v v vvv vvv v v NC >>>----.---->>>>--->>,,<<<<<<<___.__________>>>>>>>,<<<______>>>,,,,...............,,,,, CS T-box 84 aauGAAa.auugCCccgGAGcaucuuucccGAA.guuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauu 154 :::GAA ++ C:: GA:CA U :++++ G AAUA UA : A CGGU +CCGUUA+ U+ U fig|1046595.4.peg.394 796 GUCGAACuCACAGCUAUGAACAACUGAUUAAUUaGCGAAUACUA---UAAUCCGGUGC-AACCGUUAAaagcguugacagcauUUUUG 879 8*****9888999********96665555444423555555555...44558999888.99999******************999999 PP NC ,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 155 auauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+ A+GAG:::: :: + AA :: ::::AAA U::GGUGG ACCGCGA: UA :UCGUCC:: U+ fig|1046595.4.peg.394 880 CCAACAUGAGCCAAUCACUGCAAGGUGGUUGGAAAaUGAGGUGGGACCGCGAU--UAU-AUCGUCCUCGUA 947 9999****************************7777*****************..888.************ PP >> fig|1046598.4.peg.1672 Histidine ABC transporter, permease protein [Lactobacillus versmoldensis KCTC 3814] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.3e-25 96.2 0.0 cm 1 224 [] 623 842 + .. 0.96 no 0.45 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +AAAA:C+AUGA ::G:A GUA::U:A: + ++ U:: CAGAGAG:CG:CG GGUG +AG:CG:U::A :U:A::G fig|1046598.4.peg.1672 623 CAAAAAACGAUGA-CAGAA--GGUAGCUAAGUC--AAUUGCCCCAGAGAGUCGACGCC-GGUGGAAGUCGAUGCAGU--CCUUAGUG 701 ********99997.89995..49*********9..999*****************999.****************87..8******* PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGa 163 A A ++:C:: AG:+ ::U::C:GAA A +AGUA:G::A:: CGGU ++CCGUUAU + U+A +U A+GA fig|1046598.4.peg.1672 702 AGACACAUCUGUAAGUUGAAUGACUGAA---ACAAGUAGGUCAUUUCGGUAG-UUCCGUUAUcacugaaguuaAUGUAACUUCAUGA 784 ****************************...999******************.99******************99999********* PP NC ,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G:UU: U:U ++ A +:A :AA: A +::GGUGGUACC:CGA + A UCG:CC::UU+ fig|1046598.4.peg.1672 785 GCUUAGUAUCGUGAGAUAUUAAGGAGccAGAGGUGGUACCGCGA---ACA--UCGCCCUCUUA 842 ***********************7777****************9...777..9********** PP >> fig|1046598.4.peg.958 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus versmoldensis KC rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.9e-31 120.7 0.2 cm 1 224 [] 702 932 + .. 0.95 no 0.39 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AUAAAA:: A +AA::GGAAAAGUAA: ::CA+ + + U::U AGAGA:::::: GU+G+UG +A ::::::::A+A UG:: :UG fig|1046598.4.peg.958 702 AUAAAAGUCAGAAAUAGGAAAAGUAAAGAUCAA-UCACUCCUCAAGAGAAUUCUG-GUAGCUGGAAaCAGAAUGGAAAU-UGAUUUUG 786 ********************************9.88999**************98.788******999*******9998.9******* PP NC ---.---->>>>--->>,...,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.........,,,,,,,,,,,,, CS T-box 88 AAa.auugCCccgGAGca...ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.........UgauuauauaaAG 162 AA ++CC:: GA::A UC::::C:GAA A+ AGUA:G::::GACG:+ U G+:CGUUA + A+ A+G fig|1046598.4.peg.958 787 AACaCACACCUAUGAAUAacuUCAAAGCUGAA---AUCAGUAAGCUUUGACGAAAUGGUUCGUUACcccaguugaCACAGCCAACAUG 871 **98999*******9887777***********...999************************************98889999999*** PP v v NC ,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 163 aGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AGGUU::::U + AA ::::AACAAA U::GGUGG ACC:CG: +A :CG:CC::UU+ fig|1046598.4.peg.958 872 AGGUUUGAUUCGCAAGGGUCAAACAAAggUGAGGUGGAACCACGUU--AAU-UACGUCCUCUUA 932 ************************9999*****************6..554.6*********** PP >> fig|1108974.3.peg.1122 Histidine ABC transporter, permease protein [Leuconostoc citreum LBAE C10] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.8e-32 122.4 0.1 cm 1 224 [] 604 827 + .. 0.96 no 0.40 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 +UAAAA:C++UGA ::G: A+AGUA:U ::: U+AUUUU+CAGAGAG:::GCGGUU GUG+GAGC:::UAAAU A U::: A:G fig|1108974.3.peg.1122 604 UUAAAAACGUUGAGCAGA-AGAGUAGUUUGAU---UAAUUUUUCAGAGAGUUUGCGGUUAGUGUGAGCAAAUAAAUUA-UUCAGAUG 685 ******************.***********98...899***************************************9.899***** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGa 163 AA ++:C:: GAG: :: ::::GAA U+ +AGUA:::: :: CGG+ +GCCCGUUAU U+ A +UA +GA fig|1108974.3.peg.1122 686 AACCACAUCUGUGAGU-AUGUAGUUGAA--UUGAAGUAGGCUGCAUCGGAAGUGCCCGUUAUcgcauacagucUUUGGACUUAUUGA 769 ****************.9**********..99*****************************************999*********** PP v v NC ,<<<<<<<________.>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUu.caacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GGU::U:: A++ AU ::A::ACA + +::GGUGG ACC:CG : : CG:CC::U + fig|1108974.3.peg.1122 770 GGUAUUAUCAGUGAUGgUUAAUACAUUuaAGAGGUGGCACCGCGGU------AACGCCCUCUGA 827 ********99977765278*****99999***************77......77********** PP >> fig|1127131.3.peg.745 Histidine ABC transporter, permease protein [Weissella confusa LBAE C39-2] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.5e-22 85.8 0.0 cm 1 224 [] 714 943 + .. 0.89 no 0.46 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____._______>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu.GgUGaGAgccgguaaauaaaugugaauG 87 + AAA:: +UGA+:GG +AGUA:U::A U U: + AGAGA:::G: + + G+UG GA :C::::A ++ U::A:G fig|1127131.3.peg.745 714 CAUAAAGAUUUGAUUGGA-CGAGUAGUCUAACG--UCGGUGCUAAGAGAGUUGCGCAGAaGCUGGGAAGCAACCAUCGG-CCUAGAUG 797 ***************999.***********999..*******************877778****************999.889***** PP v v v NC ------->>>>--->>,..,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.................,,,,,,, CS T-box 88 AAaauugCCccgGAGca..ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.................Ugauuau 156 AA ++ CC: GA::A :U:::: + A A ::::A: CG +U +C CGUUAU + fig|1127131.3.peg.745 798 AACCACACCCAUGAUUAucGAUACAUCACA---------AAAUGUAUCCGGAUCGUCUCGUUAUaggcgcgcgccugguuuAAUCAGG 876 ****************97778888877666.........777888889********************************95555666 PP NC ,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 157 auaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AGAG::U: ::U+++AA +:: :A::AAA U::GGUGG ACC:CGA: U+ U:UCG:CC:: fig|1127131.3.peg.745 877 GGCUAGAGUGUUGGUUGGUAACAACUAACAAAAuUGAGGUGGAACCACGAU--UUUUAUCGUCCUCAAG 943 6666677777777777777777777777776666*****************..7778************ PP >> fig|1136177.4.peg.1822 Histidine ABC transporter, permease protein [Lactobacillus pentosus KCA1] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1e-30 118.3 0.0 cm 1 224 [] 567 797 + .. 0.97 no 0.43 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 ++AAAA:CA GAA::G: A+AGUA:U ::A C+U UU:U+CAG GA:::::CG+U G UG GA G::::::AA A U:: A: fig|1136177.4.peg.1822 567 UAAAAAACAGGGAACAGA-AGAGUAGUUGUAAG-CAUCUUGUUCAGCGAGUUAUCGAU-GAUGGGAaGAUAACCAAGAC-UUAUGAC 649 ******************.*************9.9999*****************999.99999999*********999.9****** PP NC -------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..............Ugauuauaua 159 GAA ++:C:: GAG:+ :U::C:GAA +AGUA:G::A: CG UU C CGUUA ++A + fig|1136177.4.peg.1822 650 GAACCACAUCUGUGAGUUGGAUGACUGAA---CCAAGUAGGUCAUUCCGGUUGGCCUCGUUAGcggcggaguuuaguGAUAAACUCG 733 *****************************...899*****************************************97778888889 PP NC ,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAG UU::U: ++ A :A::AA AA+ U::GGUGG ACCGCGA: UAA :UCGUCC::UU+ fig|1136177.4.peg.1822 734 UUGAGGUUAGUUGUGUGAGCAACUAAUgAAUaUGAGGUGGAACCGCGAU--UAA-AUCGUCCUCUUA 797 99*************************99999*****************..999.************ PP >> fig|1136177.4.peg.2027 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus pentosus KCA1] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.8e-26 99.5 0.0 cm 1 224 [] 593 824 + .. 0.94 no 0.45 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 ++AA G: UGA+::G:A AAGUA UU:A: + +U U: U CAGAGA: C:G: GU+G+UGAGA :C:G : :A A+ :U:AA fig|1136177.4.peg.2027 593 UAAACGGUUGUGAUUAGAACAAGUAAUUAAGUC-UUCCUCAUCCAGAGAGCCCGG-GUAGCUGAGAaCCGGACAGACAG-GCUUAAC 676 *******************************98.777788999***********8.788*******9999999888777.99***** PP NC ----.---->>>>--->>,,<<<<<<<___._.._________>>>>>>>,<<<____.__>>>,,,,.........,,,,,,,,,, CS T-box 87 GAAa.auugCCccgGAGcaucuuucccGAA.g..uuaauAgUAgggaaagaCGguuuc.gccCGUUAu.........Ugauuauaua 159 GAA ++:C:: GA:C+ CU: :::GAA U + A+UA::: :AG CG:+UU ++:CGUUAU + + A+ fig|1136177.4.peg.2027 677 GAACaCACAUCUAUGAACUGCUAGGGUGAAc-caGUCUCAUUAGCCUUAGCCGAAUUGgUUUCGUUAUccaaguugaCUUGAUCAAC 762 ***98999**********************5.5699*********************9999***************97788889999 PP v v NC ,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+GAG U:: :: + A :: ::A AAA UA:GGUGG ACC:CG +AA CG:CC:UUU+ fig|1136177.4.peg.2027 763 AUGAGGUCUGCCGUGCGAACGGUAGAUAAAaUAAGGUGGAACCACGC--GAAA--ACGUCCUUUUA 824 9**************************7777***************8..3444..8********** PP >> fig|1154757.4.peg.1398 Histidine ABC transporter, permease protein [Leuconostoc pseudomesenteroides 4882] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.4e-28 107.8 1.5 cm 1 224 [] 583 916 + .. 0.97 no 0.41 vv v v vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 A+ AAA:C++UGA :G:: A+AGUAAU : +UA:U U AGAGAG ::GCGGUUGGUG+GAGC:: U A:UA : AUG fig|1154757.4.peg.1398 583 AAUAAAACGUUGAGCGAA-AGAGUAAUUUUUC---AUAGUAUGAAGAGAGUUUGCGGUUGGUGUGAGCAAGUAACUAU-GAUUGAUG 664 ******************.********99876...789999*******************************999999.6789**** PP v v NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,......................... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu......................... 149 AA ++::C: GAG: U::::GAA ++ AGUA::::A CGGU ++GCCCGUUAU fig|1154757.4.peg.1398 665 AACCACAUUCGCGAGU-GAGUGAUUGAA---UUGAGUAGGUCAUGCCGGUAAUGCCCGUUAUugcauacagucuuugacugauugag 747 ****************.89*********...999***************************************************** PP NC ....................................................................................... CS T-box 150 ....................................................................................... 149 fig|1154757.4.peg.1398 748 auguugacagcgauggcaacaugaccaagaggugguaccgcgauaaacgcccucugaauacuaauuguauuuggaggguguuuuugu 834 *************************************************************************************** PP NC .........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 .........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U A + A +GAG::::UU: ++ A :AA::::AAA U: GGUGG ACC:CG: AU+A :CG:CC :UU+ fig|1154757.4.peg.1398 835 uuagugguaGAUUGACUGAUUGAGAAGUUUUGUGUGAACAAAACUUAAAuuUGGGGUGGCACCACGC--AUUA--GCGUCCUCUUA 916 ********9888899999999*************************7777*****************..8888..*********** PP >> fig|1154757.4.peg.193 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Leuconostoc pseudomesenteroide rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.4e-18 69.3 0.0 cm 1 224 [] 713 943 + .. 0.90 no 0.42 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____......_______.>>>>>>>>>-----> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu......GgUGaGA.gccgguaaauaaaug 81 ++A GC + +A : GGAAAAGUAAUU:A U +U :::UACAG A:C:::: + UGAGA ::::G::::U+A fig|1154757.4.peg.193 713 UAAUUCGC-UGAAGUUGGAAAAGUAAUUAAAUU-UUCGCAGUACAGGAAGCGCUUAAGCuaacgcAUUGAGAuGAGCGCCUGUGA-CC 797 ********.8999************99988776.999****************9954322355555566666599**********.66 PP v v NC >>>>>----.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,, CS T-box 82 ugaauGAAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugau 153 U:AAUGAAA ++CC : GAGC+ :::::: +AA :::::: CGG+ ++++CCG UA U+ fig|1154757.4.peg.193 798 UUAAUGAAAaCACACCAACGAGCUGAACAAUCAAA----------AAUUGUUCCGGAGAUUUCCGAUACcaaguacaccugugaUUGC 875 7899999987999*****************99999..........99*************************************999* PP NC ,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + + AA+GAG: ::UU: ++AA :AA:: : AA+ A:GGUGG A C:CG +AA CG:CC:U + fig|1154757.4.peg.193 876 AGGUGAAUGAGUUCUUUUGUGUAAACAAAAGGAgAAUCAAGGUGGGAACACGU--GAAA--GCGUCCUUGCA 943 *******************999999999888887999***************9..4444..9********** PP >> fig|1203066.3.peg.32 Histidine ABC transporter, permease protein [Lactobacillus pasteurii CRBIP 24.76] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2e-27 105.5 0.0 cm 1 224 [] 613 956 + .. 0.88 no 0.44 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 AUAAA :C + GAA::G:A AAGUA: U:A:A :UUU+ AGAGA::CG G+U GGUG +A CG::AA:U U:U:A :GA fig|1203066.3.peg.32 613 AUAAAGACUUGGAACAGAACAAGUAGUUUAAAG--CCGAUUUUUAGAGAGUCGUUGAU-GGUGGAAaUGCGACAAUUC--UUUAAGCGA 696 ********************************9..888*****************999.7777666599*******98..799****** PP NC --.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,........................... CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu........................... 149 A ++:C:: GAG:+ :UU C::GAA ++ AGUA::G AA: CGG+U+ GCCCGUUA fig|1203066.3.peg.32 697 ACaCACAUCUGUGAGUUGAUUGCUUGAA---UUCAGUAGAGUAAUCCGGGUA-GCCCGUUACagcaacagguuugaugauaaacuuauu 781 *98999**********************...999******************.*********999999999999999999999999999 PP NC ......................................................................................... CS T-box 150 ......................................................................................... 149 fig|1203066.3.peg.32 782 gaggcagcuuggugugagccgguugugaagaugagguggaaucgcguugaagacgcccucuuaaggcuauggccuuaggaggcguuuuu 870 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999977 PP NC .............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>:: CS T-box 150 .............UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUu 223 U A++ + A G:::: U: ++ A :A :::: AAA U::GGUGG ACC:CGA U+A UCG:CC::UU fig|1203066.3.peg.32 871 uguuuuucuagagUCAAACCUGCUAAGGCAAAUUUGCGUGAGCAAGUUUGuAAAcUGAGGUGGAACCACGA---UUAC-UCGUCCUCUU 955 7777777777765444444445555555555555555566655555555556666****************...6775.********** PP NC : CS T-box 224 u 224 fig|1203066.3.peg.32 956 G 956 * PP >> fig|1227363.6.peg.627 Histidine ABC transporter, permease protein [Lactobacillus saerimneri 30a] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.9e-28 108.3 0.0 cm 1 224 [] 719 951 + .. 0.97 no 0.48 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>.>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccggu.aaauaaaugugaau 86 +UAAA :CAA GA ::G: A+A UA:: :A: U + UU: CAGAGA ::::CGG UGGUG +A G:::: :AA+ + :U: :: fig|1227363.6.peg.627 719 UUAAAGACAACGACCAGA-AGAUUAGGUUAGGU--AGUUUGGGCAGAGAUUUCUCGGCUGGUGGAAaGAGAAAgCAAACUUCCUAGCU 803 ******************.*************9..999*************************9999******9999999******** PP NC -------->>>>--->>,,<<<<<<<____.._________>>>>>>>,<<<______>>>,,,,.........,,,,,,,,,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAg..uuaauAgUAgggaaagaCGguuucgccCGUUAu.........UgauuauauaaAGa 163 GAA ++:C:: AG:+ C::::::GAA UUAAUAGUA::::::G CGG+U +GCCCGUUA U+ U+A + +GA fig|1227363.6.peg.627 804 GAACCACAUCUGCCAGUUGCCCCGUUGAACccUUAAUAGUAGGCGGGGCCGGGUCUGCCCGUUAGcaggagaguUUUUAACUCGCUGA 891 *****************************667******************************************99999********* PP NC ,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GGUU::::U ++ A +::::AAC A+ U::GGUGG ACC:CG:: ++ ::CG:CC::U + fig|1227363.6.peg.627 892 GGUUAACUUUGUGAGAAGUUAACaUAUuUGAGGUGGGACCGCGUU--AUC-AACGCCCUCUGA 951 ***********************53448****************9..777.9*********** PP >> fig|1229756.3.peg.604 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) / ATP phosphoribosyltransferase rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.6e-20 78.5 0.2 cm 1 224 [] 705 936 + .. 0.92 no 0.38 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____......_______.>>>>>>>>>-----> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu......GgUGaGA.gccgguaaauaaaug 81 A+ AA+:: + +A ::GGAAAAGUAAUU A:AU C+ U::UACAGA A: :::: + UGAGA :::: :::A + +: fig|1229756.3.peg.604 705 AAUAAUUUCUAAAGUCGGAAAAGUAAUUGAAAU-CACGUUGUACAGAAAGUGCUUAAGCuaacgcAUUGAGAuGAGCGCCUACGU-AU 790 *******************************98.8999***********988888542224665556666665888889999888.99 PP NC >>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,, CS T-box 82 ugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugau 153 U AAUGAAA ++CC:: GA:: ::U::::+AA ::::A:: CGG+ +C+CCCG UA U AU fig|1229756.3.peg.604 791 UUAAUGAAACACACCGAUGAGAGAAAUGAUUAAA----------AGUCAUUUCGGAAACUCCCGAUACcgaguacaccuguuuuUAAU 868 9********************************9..........****************************************9999 PP v v NC ,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + AA+GAG::::U: ++AA U :A::::AAA A:GGUGG A C:CG UAA CG:CC:U + fig|1229756.3.peg.604 869 GGGUGAAUGAGUAGAUAGGCGUAAGUUUAUCUAAAAuCAAGGUGGGAACACGC--GUAA--ACGUCCUUGCA 936 *********************************8877***************8..5666..8********** PP >> fig|1229756.3.peg.621 Histidine ABC transporter, permease protein [Leuconostoc gelidum JB7] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.4e-30 116.9 0.0 cm 1 224 [] 594 816 + .. 0.97 no 0.40 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 ++AAAA:C++UGA :: : A+AGUA:UU:A: +U :U:U+CAGAGA::::GCGG U UG+GAGC:::::A:UA :U:AA:GA fig|1229756.3.peg.621 594 UAAAAAACGUUGAGCAGA-AGAGUAGUUUAAC---AUUUUCUUCAGAGAGUUUGCGGGUAAUGUGAGCAAACGAUUAU-GUUAAAUGA 676 ******************.***********98...678999********************************99999.789****** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGg 165 AA ++: :: GAG: U::::GAA + +AGUA::::A CGG+ U+GCCCGUUA U+ U A +UA++ AG fig|1229756.3.peg.621 677 AACACAUUUGCGAGU-GUGUGAUUGAA---UGAAGUAGAUCAUGUCGGAAUUGCCCGUUACcgcauacagucUUUUGACUUAGUAAGG 760 ***************.99*********...999***************************************999************* PP NC <<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 166 uuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 :: ::: A++ AU ::: :: A+ +::GGUGG ACC:CG: A+AA :CG:CC::U + fig|1229756.3.peg.621 761 CAUAAUCAGUGAUGAUUGUGUGAUaAGAGGUGGCACCGCGU--AAAA--ACGCCCUCUGA 816 *********************8888***************9..5665..*********** PP >> fig|1229758.3.peg.452 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) / ATP phosphoribosyltransferase rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.8e-19 75.4 0.0 cm 1 224 [] 707 936 + .. 0.91 no 0.40 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____......_______.>>>>>>>>>-----> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu......GgUGaGA.gccgguaaauaaaug 81 A+ A A:C + +A : GGA AAGUAAU::A:A+ C+ A ::UACAG A:C:::: + UGAGA ::::G::: U+ +: fig|1229758.3.peg.452 707 AACAGAAC-UGAAGUUGGACAAGUAAUCAAAAC-CACAUAGUACAGGAAGCGCUUAAGCuaacgcAUUGAGAuGAGCGCCUGUGU-AU 791 ********.8999******************98.89999**********999998542224555555666665899999999888.99 PP v v NC >>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,, CS T-box 82 ugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauu 154 U::AUGAAA ++CC : GAG:+ :U:: :+AA : ::A: CGG+ +++CCCG UAU U + fig|1229758.3.peg.452 792 UUGAUGAAACACACCAAUGAGUUGGAUAAUUAAA----------AUUUAUUCCGGAGAUUCCCGAUAUcgagugcaccuguguUAGCA 869 9**************************9999999..........9999***********************************99999 PP NC ,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 155 auauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + A +GAG::: U::+ ++AA U::A :::AAA A:GGUGG A C:CG: +AA :CG:CC:UU + fig|1229758.3.peg.452 870 GGUGAUUGAGCAGGUAAAUGUAAGUUUAUCUGAAAaCAAGGUGGGAACACGU--GAAA--ACGUCCUUUCA 936 99******************************7777***************9..4444..*********** PP >> fig|1229758.3.peg.468 Histidine ABC transporter, permease protein [Leuconostoc carnosum JB16] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7e-32 122.8 0.0 cm 1 224 [] 593 816 + .. 0.97 no 0.41 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 ++AAAA:C++UGA :G: A+AGUA: U:A: UA:::U+CAGAGA::::G:GGUU GUG GA:C:::::::UA +:U:A :GA fig|1229758.3.peg.468 593 UAAAAAACGUUGAGUAGA-AGAGUAGGUUAAU---GUAUCCUUCAGAGAGUUUGUGGUUAGUGCGAGCAAACGGUUAU-AUUAAACGA 675 ******************.***********99...6899***********************************9999.899****** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGg 165 AA ++:C: GAG: : U::::GAA ++ AGUA::::A : CGG+ ++GCCCGUUA U+ U A + A +GAG: fig|1229758.3.peg.468 676 AACACAUCUGCGAGU-GUGUGAUUGAA---UUGAGUAGGUCAUAUCGGGAAUGCCCGUUACcgcauacagucUUUUGACUGACUGAGA 759 ***************.9**********...999***************************************999************* PP v v NC <<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 166 uuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U ::::UA++ AU+:::: A:AA+ +::GGUGG ACC:CG A+AA CG:CC::U + fig|1229758.3.peg.468 760 UGUAACUAGUGAUAGUUAUAUAAUcaAGAGGUGGCACCGCGG--AAAA--ACGCCCUCUAA 816 *****************************************8..4555..8********** PP >> fig|1238674.3.peg.256 Histidine ABC transporter, permease protein [Weissella ceti NC36] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.9e-25 96.0 0.1 cm 1 224 [] 714 941 + .. 0.95 no 0.38 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____._______>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu.GgUGaGAgccgguaaauaaaugugaauG 87 AU AAA : AUGAA:G:: +AGUA::U:A AU +UU UU: A AGAGAG:C:: + G UGAGA ::G:U:AA A+ + U:A::G fig|1238674.3.peg.256 714 AUUAAAGAUAUGAACGAA-CGAGUACCUUACAU-UUUGUUGCAAAGAGAGUCACGCUGAaGUUGAGAAGUGAUCAACAG-AUUAAGGG 798 ******************.*********99887.8999****************655558*****************99.8899**** PP v v v NC ------->>>>--->>,..,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,,,,,, CS T-box 88 AAaauugCCccgGAGca..ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauuauau 158 AA ++::C: GA: A :::U:: +AA ::A::: CGG+U +CCGUUA U ++ ++ fig|1238674.3.peg.256 799 AACCACAUUCGUGAUAAuuGACAUAUUAAA----------CGUAUGUUCGGGUCGCUCCGUUACaagcuuuaccuuggaUACAAGGUA 876 **************9877688888888888..........8899999***************************************** PP v v NC ,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AA+GAG::U::: A++AAU :::A::AAA U::GGUGG A C:CGA U+ U UCG:CC:: fig|1238674.3.peg.256 877 AAUGAGUGUUAGGCAGUAAUGUCUAACAAAAuUGAGGUGGAAUCACGAA--UUUUAUCGUCCUCAAG 941 ****************************8777****************9..77778*********** PP >> fig|203120.7.peg.1544 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) / ATP phosphoribosyltransferase rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.3e-18 70.0 0.0 cm 1 224 [] 710 942 + .. 0.92 no 0.40 v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------.<<<<<<____....._______>>>>>>>>>----->> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGA.gccggcGgUu.....GgUGaGAgccgguaaauaaaugu 82 A+ AGC + +A : G AAAAGUA:UU:A: +CC U U :UACAG A :C::: G U UGAGA:::G: : A A++:U fig|203120.7.peg.1544 710 AAUUUAGC-UGAAGUUGAAAAAGUAGUUAAUUACCGUGUUGUACAGGAAgUGCUCAAGCUaacgcAUUGAGAUGAGCGCCAGCAUAAU 796 ********.89999***********************************666666666667887778888886666666666666*** PP v NC >>>>----.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,, CS T-box 83 gaauGAAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauu 154 :AA:GAAA ++ C : GAGC+ ::U::::+AA A::::A:: CGG+ +++CCCG UA U U+ fig|203120.7.peg.1544 797 UAAUGAAAaCACACCAACGAGCUGAAUGGUUAAA---------AAGCCAUUCCGGAAAUUCCCGAUACcgaauaagccugcguUAGUA 875 *******988999*********************.........****************************************99999 PP vv vv v v NC ,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 155 auauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +UA +GAG: :UU:+ ++AA U:AA: :AAA A:GGUGG A C:CG: AA :CG:CC:U + fig|203120.7.peg.1544 876 GGUUAUUGAGCUUUUUUACGUAAGUAAAAUUGAAAuCAAGGUGGGAACACGU---GAA-GACGUCCUUGCA 942 ********************************8887***************9...466.4*********** PP >> fig|203120.7.peg.573 Histidine ABC transporter, permease protein [Leuconostoc mesenteroides subsp. mesenteroides ATC rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5e-34 131.1 1.3 cm 1 224 [] 550 775 + .. 0.95 no 0.37 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--.------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUa.cAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A AAA:C++UGA ::G: A+AGUA:UUCA U U+A::UUA AGAGA::::GCGGUUG+UG+GAGC::::A::UAA + UGAA:GA fig|203120.7.peg.573 550 AGUAAAACGUUGAGUAGA-AGAGUAGUUCAUUU--UAAAUUUAgAAGAGAAUUUGCGGUUGCUGUGAGCAAAUAGUUAA-AUUGAACGA 634 ******************.***********998..5555555549********************************99.889****** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGgu 166 AA ++:C:: GAG: ::::C:GAA A+AGUA:G:::: CGG+ +G+CCGUUAU + U A +UA +GAG:U fig|203120.7.peg.573 635 AACACAUCUAUGAGU-AUAAAGCUGAA---CAAAGUAAGCUUUGUCGGAAGUGUCCGUUAUcacauaacaguCUUUGACUUAUUGAGAU 719 ***************.89*********...999**************************************98889999999******* PP v v NC <<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 167 uguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ::U::UA++ AU+::A::A:AA +::GGUGG ACC:CG : A : CG:CC::U + fig|203120.7.peg.573 720 GCUACUAGUGAUAGUAGCAUAACaaAGAGGUGGAACCGCGAU---GA-AACGCCCUCUAA 775 ********************99999***************85...45.58********** PP >> fig|278197.12.peg.1216 Histidine ABC transporter, permease protein [Pediococcus pentosaceus ATCC 25745] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.1e-28 108.7 0.1 cm 1 224 [] 587 817 + .. 0.96 no 0.37 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 A A:CAAUGA+::G: AAAGUA:UU:A: U U U :U+ AG GAGCC ::G+ GUG +A :: GGU: A A :U:AA: fig|278197.12.peg.1216 587 ACUUUAGCAAUGAUCAGA-AAAGUAGUUUAUGUAAUCUUCGUUAAGCGAGCCGUGGAC-AGUGGAAgCAUGGUCAAGAC-CAUAAAU 670 ******************.************************************999.77888888*******99999.******* PP NC -------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..........,,,,,,,,,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..........UgauuauauaaAGa 163 GAAA ++:C:: AG:+ :U::C::GAA + +++A+UA::G::A: CGGU + ++CCGUUAU U+A +U+ +GA fig|278197.12.peg.1216 671 GAAACACAUCUGUAAGUUGAUAACUUGAACAAUUAAUUAGAGUUAUCCGGUAA-UUCCGUUAUcauuuaaguuAAUUAACUUUCUGA 756 *****************************************************.99****************98899999999**** PP v v NC ,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GGUU U: ++ A :A AACAAA U::GGUGG ACCGCGA AA UCGUCC::UU+ fig|278197.12.peg.1216 757 GGUUGGUUGCGUGAGCAAUUAACAAAcuUGAGGUGGAACCGCGAU-UGAA-CUCGUCCUCUUA 817 ***********************9988*****************9.4555.9*********** PP >> fig|314315.12.peg.830 Histidine ABC transporter, permease protein [Lactobacillus sakei subsp. sakei 23K] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.5e-25 96.9 0.0 cm 1 224 [] 589 812 + .. 0.86 no 0.39 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 U AAA:C++UGAA:GG: A AA U::: U UUA::: ACAGAGA:C:G: UGGUG++A :C:G::::U +A+:::A UG fig|314315.12.peg.830 589 CUUAAAACGUUGAACGGACCA---AAUUAGUUU--UUAAGGCACAGAGAGCUGAGAUAUGGUGUAAAUCAGCCCUUCGAAACUAGUGG 671 ******************666...5******99..*******************99999***************************97 PP v v v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGg 165 ++:CC: GAG:+ :UU::C:GAA +AGUA:G::AA: CG U C CGUUAU U ++A ++ A+ AG fig|314315.12.peg.830 672 --CACAUCCGUGAGUUGAUUAUCUGAA---CGAAGUAAGAUAAUCCGUUAG--CCCGUUAUcgcuguaguuuUAGAAACUACAUAAGU 752 ..8888*********************...899***********9996654..68***********9999995555555555555555 PP v vv v v NC <<<<<<___.._____>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 166 uuguuguaa..aaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U:: :+A+ A UU: ::A AAA U::GGUGG ACCGCGA A++A UCGUCC::UU fig|314315.12.peg.830 753 UUAAGCAAUguGAGUUGUUUAUUAAAcUGAGGUGGAACCGCGAU-AAUA-UUCGUCCUCUUG 812 555555444443444455555566666****************8.6677.8*********** PP >> fig|348151.3.peg.1983 Histidine ABC transporter, permease protein [Lactobacillus siliginis strain DSM 22696] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.4e-27 106.1 0.0 cm 1 224 [] 594 939 + .. 0.97 no 0.45 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 ++AA :C+A GAA::G: A+AGUAA:U: A + UU:U+CAGA A:::: CG U G+UGAGA G :::::AA + + :A:UG fig|348151.3.peg.1983 594 UAAAUGACGAAGAACAGA-AGAGUAAGUUUGA---ACCUUGUUCAGAAAGUGAUCGCU-GCUGAGAuGGUCACCAAGGU-AUUAACUG 675 ******************.**********999...678*****************888.*****************999.788***** PP NC ------->>>>--->>,,<<<<<<<____......._________>>>>>>>,<<<______>>>,,,,................... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAg.......uuaauAgUAgggaaagaCGguuucgccCGUUAu................... 149 AA+ ++:C:: GAG: ::U::C:GAA + AA GUA:G::A:: CGG U G CCGUUAU fig|348151.3.peg.1983 676 AAGCACAUCUGUGAGUCGUCUAGCUGAAUguucaggAGAACUGUAAGUUAGACCGGCGUGGGCCGUUAUcccaaggaguuaauuaaua 763 ****************************779*****99999*********************************************** PP NC ........................................................................................ CS T-box 150 ........................................................................................ 149 fig|348151.3.peg.1983 764 acucgccgagucaaucacugugaggugguugaaugcuugaggugguaccgcgucaacacgcccucuuugauuuuuuaaucaaagaggg 851 **************************************************************************************** PP v v NC ..............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>: CS T-box 150 ..............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuU 222 U+A + ++GAG UUG::GU ++ A C::CAA AAA +: GGUGG ACCGCG:: A ::CGUCC :U fig|348151.3.peg.1983 852 cguguuuuuuuauuAAUUAACUCCGUGAGUUUGCCGUUGUGAAGCGGCAAUAAAaAGGGGUGGCACCGCGUU--GACCAACGUCCUCU 937 *************9889999999****************************7777*****************..6666********** PP NC :: CS T-box 223 uu 224 fig|348151.3.peg.1983 938 AG 939 ** PP >> fig|362948.14.peg.1136 Histidine ABC transporter, permease protein [Lactobacillus salivarius UCC118] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.7e-28 106.8 0.1 cm 1 224 [] 650 894 + .. 0.93 no 0.39 v v v v v v v NC ::::::<<------<<<<-------<<<<<<---.----<<<--------<<<<<<____.._______.>>>>>>>>>----->>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauc.cuuauuuUacAGAGAgccggcGgUu..GgUGaGA.gccgguaaauaaaugug 83 AUAAA :C+AUGAA:GG A+AGUAA:U A: U + : A AGAGA:::::: U G+UGA+A :::::: : U A :U fig|362948.14.peg.1136 650 AUAAAGACGAUGAACGGA-AGAGUAAAUGAAGUAcGGACGCCGAAAGAGAGUAUCUUUAUcaGCUGAAAgGGAUACCGAUCCACUUG 735 ****************99.************9973333333467***********9888889*******99*****6766669**** PP v NC >>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.................,,,, CS T-box 84 aauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.................Ugau 153 A:UGAA ++ CC: GAG:+U:U:::::GAA +U++UAGUA:::::A:ACG:+UU ++:CGUUA+ + U fig|362948.14.peg.1136 736 AUUGAACCACACCCGUGAGUUUAUAGGUUGAAUAUUUUAGUAGACCUAUACGUGUUAUUGCGUUAAaugugaguuauacguauGUGU 822 **********************************************************************************98889 PP vv vv NC ,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +A +U A+GAGG:U: :U ++ A +: :A:CAAA ::GGUGG ACC: :: U AU:: :CC::UU+ fig|362948.14.peg.1136 823 AACUUGAUGAGGCUAUUUUCGUGAGAAUUUAGCAAAauCGAGGUGGAACCGUACU-UUCAUAGUGCCCUCUUA 894 999999***************************555569****************.45556************ PP >> fig|525338.3.peg.1804 Histidine ABC transporter, permease protein [Lactobacillus plantarum subsp. plantarum ATCC 149 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.5e-30 114.6 0.0 cm 1 224 [] 569 799 + .. 0.97 no 0.45 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 ++AAAA:CA GAA::G: A+AGUA:UU:::A + UU: AG GA:: ::CG+U G UG GA G:: :::AA +A U:::AA:G fig|525338.3.peg.1804 569 UAAAAAACAGGGAACAGA-AGAGUAGUUGUAAG-GACCUUGCCGAGCGAGUUAUCGAU-GAUGGGAaGAUGACCAAGGA-UUACAACG 652 ******************.*************9.999******************999.99999999**********99.9******* PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..............UgauuauauaaA 161 AA ++:C:: GAG:+ ::::C:GAA +UAGUA:G:::: CG UU C CGUUA ++A + + fig|525338.3.peg.1804 653 AACCACAUCUGUGAGUUGGACAGCUGAA---GUUAGUAAGCUGUUUCGGUUGGCCUCGUUAGcggcggaguuuaguGAUAAACUCGUU 737 ****************************...889*****************************************9777888888999 PP NC ,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 162 GaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GAG: U::U: ++ A :A::A : AA+ U::GGUGG ACCGCGA: UAA :UCGUCC::UU+ fig|525338.3.peg.1804 738 GAGAUUAGUUGUGUGAGCAACUAGUgAAUaUGAGGUGGAACCGCGAU--UAA-AUCGUCCUCUUA 799 *************************99999*****************..999.************ PP >> fig|525338.3.peg.967 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus plantarum subsp. rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.7e-26 102.3 0.0 cm 1 224 [] 596 827 + .. 0.94 no 0.45 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 ++AA G: UGA+::G:A AAGUA UU:A: + +U U: U CAGAGA: C:G: GU+G+UGAGA :C:G : :A A+ :U:AA GA fig|525338.3.peg.967 596 UAAACGGUUGUGAUUAGAACAAGUAAUUAAGUC-UUCCUCAUCCAGAGAGCCCGG-GUAGCUGAGAaCCGGACAGACAG-GCUUAACGA 681 *******************************98.777788999***********8.788*******9999999888777.99******* PP NC --.---->>>>--->>,,<<<<<<<___._.._________>>>>>>>,<<<____.__>>>,,,,.........,,,,,,,,,,,,,, CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAA.g..uuaauAgUAgggaaagaCGguuuc.gccCGUUAu.........UgauuauauaaAGa 163 A ++:C:: GA:C+ CU:::::GAA U + A+UA:::::AG CG:+UU ++:CGUUAU + + A+ A+GA fig|525338.3.peg.967 682 ACaCACAUCUAUGAACUGCUAAGGUGAAc-caGUCUCAUUAGCCUUAGCCGAAUUGgUUUCGUUAUccaaguugaCUUGAUCAACAUGA 769 *98999**********************5.5699*********************9999***************977888899999*** PP v v NC ,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G U::::: + A :::::A AAAUA:GGUGG ACC:CG UAA CG:CC:UUU+ fig|525338.3.peg.967 770 GGUCUACCGUGCGAACGGUAGAUgAAAUAAGGUGGAACCACGC--GUAA--ACGUCCUUUUA 827 ***********************9999***************8..5666..8********** PP >> fig|525362.3.peg.1752 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus ruminis ATCC 256 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.2e-23 88.8 0.0 cm 1 224 [] 708 944 + .. 0.97 no 0.46 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 +UAA +G:AAUGA ::GGA AA A :U::CA + A:::U+ AGAGA::C: :GG +G+UG+GA:C:G:::::U + UG::A: G fig|525362.3.peg.1752 708 UUAAUUGUAAUGACCAGGAGAA--AACUGUCAGAAAGAGCGUUAAGAGAGUCU-UGGGAGCUGUGAACAGACCGCUCG-UGGCAGCGU 791 ******************9998..9****************************.56667*****************99.********* PP NC ------>>>>--->>,,<<<<<<<____............_________>>>>>>>,<<<______>>>,,,,.........,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg............uuaauAgUAgggaaagaCGguuucgccCGUUAu.........Ugauua 155 A +GCC:: GA:C+ :U ::::GAA + + UAGUA:::: A: CGGUU+ ++CCGUUAU + U fig|525362.3.peg.1752 792 A-CACGCCUGCGAGCUGAUGAAAUGAACcauuaauauugaACUGUAGUAGUUUUAUCCGGUUAGUUCCGUUAUcgcuguugaCUCGUU 878 *.9************************779****************************************************889999 PP v v NC ,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 156 uauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+ A+GAG U:::::U + A +:::::A AAA : GGUGG ACC:CG : AA : CG:CC : + fig|525362.3.peg.1752 879 CAACAUGAGGUCCGUAUUGCGAAAUGCGGAUgAAACGGGGUGGAACCACGAU---AA-AACGUCCUCCGA 944 999****************************9999***************75...56.68********** PP >> fig|525366.3.peg.1481 Histidine ABC transporter, permease protein [Lactobacillus vaginalis ATCC 49540] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5e-32 123.4 0.0 cm 1 224 [] 594 825 + .. 0.99 no 0.43 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 +AAAA:C+A GAA::G: AGUAA:::A: + CUU :U:U+ AGAGAG::::C GU GGUG GA G::::U:A: ++U:U:::UG fig|525366.3.peg.1481 594 CAAAAAACGAAGAACAGA-CUAGUAAAGAAUUAACUUGCUCUUAAGAGAGUUCACUGU-GGUGGGAuGUGAAUGAGCUGGUGUUCUUG 679 ******************.************************************999.***************************** PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauuauaua 159 AA ++:C:: AG:+ :U:::::GAA ++AGUA:::::A: CGG+ + GCCCGUUA +A +UA fig|525366.3.peg.1481 680 AAUCACAUCUGCAAGUUGAUCCAUUGAA---GUAAGUAGGUGGAUCCGGGGAAGCCCGUUACagcgcggaguuuaauuAAUGAACUUA 764 ****************************...899*******************************************989999999** PP NC ,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAGGUU :U:U ++ A +:A: AACAA U::GGUGG ACC:CG: AA :CG:CC:: U+ fig|525366.3.peg.1481 765 CUGAGGUUGCUUUUGUGAGAAAGUAACAACaUGAGGUGGAACCGCGU---GAA--ACGCCCUCAUA 825 **********************************************9...777..9********** PP >> fig|557433.4.peg.534 Histidine ABC transporter, permease protein [Lactobacillus reuteri JCM 1112] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.3e-29 113.1 0.0 cm 1 224 [] 584 928 + .. 0.99 no 0.43 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 ++AA :CA UGAA::G: AGUA:::C: + AUU: A AGAGAG:C: : +U G UG GA: :G:U:AAU+ +U :G:::GAA fig|557433.4.peg.534 584 UAAAUGACAGUGAACAGA-CUAGUAGAGCUUUA-GGCAUUGCAAAGAGAGUCCUUAAU-GAUGGGAAGGGAUCAAUGUUUCGGCUUGAA 669 ******************.************98.99********************99.****************************** PP v v NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............................. CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............................. 149 ++:C:: GAG:+ : :U:C:GAA+ AUAGUA:G:A: : CGG+ + GCCCGUUA fig|557433.4.peg.534 670 UCACAUCUGUGAGUUGGCCUUCUGAAAGCCAUAGUAGGAAGACCCGGGGAAGCCCGUUACagcgcggaguuuauuuuaaugaacucacu 758 ***************************************************************************************** PP NC ......................................................................................... CS T-box 150 ......................................................................................... 149 fig|557433.4.peg.534 759 aaggcuauuauucgugagaaaauagcaagaugagguggaaccgcggaaacgcccucguagccaguuuaggcucgaggguguuuuuuguu 847 ***************************************************************************************** PP v v NC .......,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 .......UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + A +UA + AG ::::U:U + A +:A:::: AAA U::GGUGG ACC:CGA +A UCG:CC::U fig|557433.4.peg.534 848 ucauuaaAAUAGACUUAUUAAGGCAAAUAUUGCGAAAUAUUUGUAAAcaUGAGGUGGAACCACGAU--GUA-CUCGUCCUCUAG 928 ******988899999999999***********************8888*****************8..999.8*********** PP >> fig|568703.9.peg.1193 Histidine ABC transporter, permease protein [Lactobacillus rhamnosus GG] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1e-23 91.2 0.0 cm 1 224 [] 503 729 + .. 0.95 no 0.48 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AU AAA:C++UGA :GG:A AU:: C +C+U ::U ACAG GAG:::G:G U G UG +A :C:::UA:: A G ::AU fig|568703.9.peg.1193 503 AUUAAAGCGUUGAGUGGAAU---CGAUAAGCGGUCAUGGUUCACAGCGAGUUCGGGUU-GAUGGAAaCCGAAUAGCCAUCCGUUUAUC 586 ******************43...45999999999********************9666.88888888************999999998 PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaG 164 A ++:CC: GAG: :::::::GAA AA AGUA::::::: CG UU GC CGUUAU +A ++ A+GAG fig|568703.9.peg.1193 587 A--CACAUCCAUGAGU-GGACGAUUGAA--CAACAGUAGGUCGUCUCGGUUGGGCUCGUUAUcgccgugguugAAGCAACUACAUGAG 669 8..8899*********.9**********..999****************************************999999********* PP NC <<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GU: :U: ++ A :A: :ACAAA U::GGUGG ACCGCG: UAA :CGUCC::UU+ fig|568703.9.peg.1193 670 GUUGAUUGUGUGAGCAAUUGACAAAucUGAGGUGGAACCGCGGU-UUAA-GCCGUCCUCUUA 729 **********************8877******************.5666.************ PP >> fig|568703.9.peg.1362 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Lactobacillus rhamnosus GG] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.2e-27 106.7 0.0 cm 1 224 [] 627 880 + .. 0.97 no 0.50 vv vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + AAG: UGA+::G: AAGUA::U::: + A:U: ACAGAGAGC:: G+UUG+UGAGA+ ::GU:A:U+ +:::A::GA fig|568703.9.peg.1362 627 CAUGAAGUUGUGAUUAGACCAAGUAGGUUGGCA--CCAAUCCACAGAGAGCGCC-GAUUGCUGAGAACGCGUGAUUG--ACCGACUGA 709 ********************************9..777**************96.8999*******99*******99..599****** PP v v NC --.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,......................... CS T-box 89 Aa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu......................... 149 A ++:C:: GA:C+U::U::C GAA AGUA G::A::ACG:+ + ++:CGUUAU fig|568703.9.peg.1362 710 ACaCACAUCUAAGAACUUGAUAGCCGAA---CCGAGUAAGCUAUCACGCACCUgUUGCGUUAUcaccgcugccaauaacaguucgcgc 794 *988999*********************...899*****************99999******************************** PP NC ...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 ...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GAUU ++ A+GAGGU:::: U ++AA ::::ACAAA U::GGUGGUACC:CGA: U A :UCG:CC:: + fig|568703.9.peg.1362 795 aagccgacaugGGAUUGGUAGAUGAGGUUUGGGUCGUAAGGUCCAGACAAAuUGAGGUGGUACCGCGAAGUUGA-UUCGCCCUCGAA 880 ***********99999********************************8877*****************88888.************ PP >> fig|585506.3.peg.1329 Histidine ABC transporter, permease protein [Weissella paramesenteroides ATCC 33313] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7.2e-21 80.2 0.0 cm 1 224 [] 673 899 + .. 0.88 no 0.39 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<.--------<<<<<<____._______>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuu.UacAGAGAgccggcGgUu.GgUGaGAgccgguaaauaaaugugaau 86 A+AAAA:: +UGA+:GG A+AGUA:U:: : U +U UU: UA AGAGA::::: + G+UGA+A ::::::AA + +: ::A: fig|585506.3.peg.1329 673 AAAAAAGAUUUGAUUGGA-AGAGUAGUCUUGUU--AUCUUGuUAAAGAGAGUUACGCUGAaGCUGAAAAGUAACCAAGGU-ACUAGAU 756 ***************999.*************9..6666651569**********655558*************666665.99***** PP v vv v v vv NC -------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...................,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...................Ugauua 155 GAA ++ CC: GA::AUC :::C AA G::: C :+U + : GUUAU U A+U fig|585506.3.peg.1329 757 GAACCACACCCAAGAUUAUCGGAGCCUAA---------UCGUUC--CCGUGUCAUGAUGUUAUccaugagugccauuugauaUCAAUG 833 ******************96555555444.........344444..577777777788899999999*************99999*** PP v v NC ,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 156 uauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++ AGAG :U:: :UA++AAU : ::A: AAA U::GGUGG ACC:CGA UAA UCG:CC:: fig|585506.3.peg.1329 834 GUACUAGAGUAUUAGCUAGUAAUGGUUAAUUAAAcUGAGGUGGAACCACGA--GUAA--UCGUCCUCAAG 899 *******************************8888****************..6766..*********** PP >> fig|701521.8.peg.668 Histidine ABC transporter, permease protein [Pediococcus claussenii ATCC BAA-344] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.5e-26 99.7 0.0 cm 1 224 [] 720 947 + .. 0.96 no 0.40 vv vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 +A A:CAA GAA::G: A+AGUA:: :: +AUUUU+ AG GAG::G:: + GUG+GA ::C::UAAAU AA+::+ ::GA fig|701521.8.peg.668 720 GAAUUAACAAAGAACAGA-AGAGUAGCG-UGU---CAAUUUUUAAGCGAGUUGUGAAG-AGUGUGAgCACAAUAAAUUAAACAUGGCGA 802 ******************.*******84.444...67999999***********9766.89*****9************877788**** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.............,,,,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.............UgauuauauaaAGaG 164 A ++:C:: GAG:+ : :::::GAA UAAUAGUA::::: : CGGU + +CCCGUUAU U U+A +U +GAG fig|701521.8.peg.668 803 ACCACAUCUGCGAGUUGAGAGAUUGAA-CUAAUAGUAGGUCUUUCCGGUAA-UCCCGUUAUcauuggaguuaauUAUUAACUUCCUGAG 889 ***************************.***********************.99********************99999********** PP NC <<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GU: U :+ ++ A U: A :AC AA U: GGUGG A CGCGA U+ UCGUCC :UU+ fig|701521.8.peg.668 890 GUUGUGCAUGUGAGUGUAUGACgAACUGGGGUGGAAUCGCGAU--UUU-GUCGUCCUCUUA 947 **********************8888****************9..888.9*********** PP >> fig|714313.3.peg.175 Histidine ABC transporter, permease protein [Lactobacillus sanfranciscensis TMW 1.1304] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.7e-20 78.8 0.0 cm 1 224 [] 707 939 + .. 0.91 no 0.45 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<.--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuu.UacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 +U AAA : AUGAA:G: A+AGUA :::A: U :U: + AGAGA::C:: GGU+G+UGA+A+::G:::A:UA+ :U::: GA fig|714313.3.peg.175 707 UUUAAAUAUAUGAACGAA-AGAGUAACCUAUUG--GUGCUGaCUGAGAGAGUCAC-GGUAGCUGAAAAGUGACCAGUAG-CAUAGGCGA 790 ******************.*************9..5555551679*********9.8999*************666655.********* PP v v v v NC ------>>>>--->>,..,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.......................,,, CS T-box 89 AaauugCCccgGAGca..ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.......................Uga 152 A ++ :C: GA: A :U:U:: +AA ::A:A: CG CGUUA+ G fig|714313.3.peg.175 791 ACCACACUCGCGAUCAuuGAUAUAGCAAA----------ACUAUAUCCGGCCGACGUCGUUAAaugucgcaccuuacauucuagaaCGU 869 *************9886556666666666..........66666677***************************************888 PP v v NC ,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 153 uuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + + +GAG::: U:G A++AAU C:A ::: AA +::GGUGG ACC:CGA A UCG:CC:: fig|714313.3.peg.175 870 CAGGUGCCUGAGAGUUUAGCAGUAAUGCUAGGCUgAACAGAGGUGGAACCACGAA--CGA-AUCGUCCUCAAG 939 889999999*************************8888****************7..888.7*********** PP >> fig|762051.3.peg.1596 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) / ATP phosphoribosyltransferase rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.9e-21 80.6 0.2 cm 1 224 [] 382 613 + .. 0.90 no 0.40 NC ::::::<<-----.-<<<<-------<<<<<<-------<<<--------<<<<<<____......_______.>>>>>>>>>----- CS T-box 1 auaAAagCaaUgA.aggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu......GgUGaGA.gccgguaaauaaau 80 ++AAA :C+ UGA A::GGAA+AGUAAUU:A:AU +U U::UACAGA A: :::: + UGAGA :::: :::A + U fig|762051.3.peg.1596 382 UAAAACACGCUGAaAUCGGAAGAGUAAUUAAAAU-AAUGUUGUACAGAAAGUGCCUAAGCuaacgcAUUGAGAuGGGCGCCUACGU-U 467 *********996559*****************98.8999***********999888542224555555666665888999999888.9 PP v v NC >>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,, CS T-box 81 gugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugau 153 :U:AAUGAAA ++CC:: GAG: ::U::: +AA :::A:: CGG+ +C+CCCG UA U fig|762051.3.peg.1596 468 UUUAAUGAAACACACCGAUGAGUGAAAUGAUAAAA----------AAUCAUUUCGGAAACUCCCGAUACcgaguacaccuguguUAGC 545 9**********************999999988888..........89999999*******************************9999 PP v v NC ,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + + AA+GAG::: U::+ + AA U::A :::AAA A:GGUGG A C:CG +AA CG:CC:U + fig|762051.3.peg.1596 546 AGGUGAAUGAGUAGGUAAACGCAAGUUUAUCUAAAAuCAAGGUGGGAACACGC--GAAA--ACGUCCUUGCA 613 *********************************8877***************8..3444..8********** PP >> fig|762051.3.peg.1613 Histidine ABC transporter, permease protein [Leuconostoc kimchii IMSNU11154] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.1e-31 118.5 0.1 cm 1 224 [] 597 819 + .. 0.97 no 0.42 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 ++AAAA:C++UGA ::G: A+AGUA:UU: : +U :U:U+CAGAGAG:::GCGG U GUG+GAGC:::U:A:UA : :AA:GA fig|762051.3.peg.1613 597 UAAAAAACGUUGAGCAGA-AGAGUAGUUUGAG---AUUUUCUUCAGAGAGUUUGCGGGUAGUGUGAGCAAAUGAUUAU-CUUAAAUGA 679 ******************.***********98...688999*******************************999999.788****** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGg 165 AA ++:C:: GAG: U::::GAA +++AGUA::::A CGG+ U+GCCCGUUAU U+ U A +UA +GAG: fig|762051.3.peg.1613 680 AACACAUCUGCGAGU-GUGUGAUUGAA--GUUAAGUAGGUCAUGUCGGGGUUGCCCGUUAUcgcauacagucUUUUGACUUAUUGAGA 764 ***************.99*********..6778***************************************99************** PP v v NC <<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 166 uuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 : :::: A++ AU :::: :: A+ +::GGUGG ACC:CG +AA CG:CC::U + fig|762051.3.peg.1613 765 CGUAAUCAGUGAUGGUUAUGUGAUaAGAGGUGGAACCGCGG---AAA--ACGCCCUCUGA 819 *********************8888***************7...666..7********** PP >> fig|862514.3.peg.712 Histidine ABC transporter, permease protein [Pediococcus acidilactici DSM 20284] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.6e-29 111.3 0.0 cm 1 224 [] 546 774 + .. 0.97 no 0.43 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 + :CAAUGA+::G: A+AGUA:U::AC U ++ U:: A AG GA C::G:G+ UGGUG +A :C::G ::A++ GU::A:GA fig|862514.3.peg.712 546 UGUUUGACAAUGAUCAGA-AGAGUAGUCUACGU-UACUUCGAAAAGCGACCUAGGGAAUGGUGCAAgCCUAGGCGAAGC-CGUAGAUGA 631 ******************.*************9.888999***********************************9999.9******** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<< CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGgu 166 A ++:C:: GAG:+ :U: CC:GAA + A++A UA:GG :A: CGGU + ++CCGUUAU + +A +U+ +GAG U fig|862514.3.peg.712 632 ACCACAUCUGUGAGUUGAUAGCCUGAA-AAAUAACUAGGGUUAUCCGGUAA-UUCCGUUAUcauuuaaguuaAUGCAACUUUCUGAGGU 718 ***************************.99999******************.99****************99889999999999***** PP NC <<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 167 uguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 : ::: + A ::: :A AAA U::GGUGG ACCGCGA UAAU UCGUCC::UU+ fig|862514.3.peg.712 719 UGACUGCGCGAGCAGUUGAUAAAuaUGAGGUGGAACCGCGA---UAAU-UCGUCCUCUUA 774 ********************7777*****************...8997.*********** PP >> fig|911104.3.peg.1071 Histidine ABC transporter, permease protein [Weissella cibaria KACC 11862] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.9e-22 85.1 0.0 cm 1 224 [] 713 947 + .. 0.90 no 0.44 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<____._______>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu.GgUGaGAgccgguaaauaaaugugaauG 87 + AAA:: +UGA+:GG +AGUA:UU:A U AUU: + AGAGA:::G + + G+UG GA C::::AAU++ U:AA:G fig|911104.3.peg.1071 713 CAUAAAGAUUUGAUUGGA-CGAGUAGUUUAACG--UCAUUGCUUAGAGAGUUGUGCAGAaGCUGGGAAGCAACCAAUGG-CCUAAAUG 796 ***************999.***********999..******************9766667*******99*********9.889***** PP v v v v v NC ------->>>>--->>,.,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.....................,,,, CS T-box 88 AAaauugCCccgGAGca.ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.....................Ugau 153 AA ++ CC: GA::A :U:C: G A A :G:A: CG:UU +C:CGUUAU fig|911104.3.peg.1071 797 AACCACACCCAUGAUUAuCGGUACAAGUC------AAAACUGUAC-CCGAUUCGUCUCGUUAUcgacgcgcgccuguuuugauuGAGC 877 ****************9534444444444......4444444444.5************************************97778 PP v v NC ,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + + +GAG:::::U:U+++AA +:A:::::AAA U::GGUGG ACC:CGA AU+A UCG:CC:: fig|911104.3.peg.1071 878 AGGGGUCUGAGUGUUAUUUGGUAACAAAUAGCAAAAuUGAGGUGGAACCACGAA-AUUA-GUCGUCCUCAAG 947 88889999*************************7777****************9.8888.9*********** PP >> fig|272623.7.peg.1301 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Lactococcus lactis subsp. lactis Il1403] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.1e-24 91.9 0.0 cm 1 224 [] 725 942 + .. 0.90 no 0.39 v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A AAA G:+A + :G: AA+AGUA:U:::: U+ :::U+ AGAGAGCC:: GUUG+UGAGA+::GGU:::+ A U::::A:GA fig|272623.7.peg.1301 725 ACAAACGAGAGA--UGAAAAGAGUAGUCUUAGG--UAUCAGUUGAGAGAGCCUU--GUUGCUGAGAAAAGGUCUGAUA-UUGGGAUGA 805 ******997776..9999**************9..******************9..99*******************9.9******** PP v v vvv vvv v NC ------>>>>--->>,.......,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..........,,,,,,,,,, CS T-box 89 AaauugCCccgGAGca.......ucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..........Ugauuauaua 159 A ++ :C: :C + A+UA+UA G CG:U +:CGUUA+ U+AU+A +UA fig|272623.7.peg.1301 806 ACCACACUCA---UCGcuaucuuACU--------CACAUUAUUAUGU--GAGCGUUAG-CUGCGUUAAugcuaaguugUUAUAACUUA 879 ******9999...8864443333222........2444566666444..345*****9.99*************************** PP v v NC ,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GAG U:::U:U ++ A +:A:::A AAA UA:GGUGG ACC:CG : UAA : CG:CC:UU + fig|272623.7.peg.1301 880 CCGAGGUCACUUUUGUGAAAAAGUGAUAAAuUAAGGUGGAACCACGAU--UAA-ACCGUCCUUUAA 942 ***************************8877*****************..999.************ PP >> fig|467705.9.peg.1388 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus gordonii str. Challis substr rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7.2e-19 72.7 0.0 cm 1 224 [] 616 848 + .. 0.93 no 0.50 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + AAA:C+AUGA :G::AA A:U::A: + A+: ACAGAGAG::: +U GGUGAGA :::U : +A :U::A:GA fig|467705.9.peg.1388 616 UCGAAAGCGAUGAGAGAAAA----AGUCUAAGA---CAAGAAACAGAGAGUGCUUAAU-GGUGAGACGGCAUCC-AAUCCUUAGACGA 694 ******************77....4******96...4555689**********99998.*******99***954.555699******* PP NC ------>>>>--->>,,<<<<<<<____............_________>>>>>>>,<<<____.__>>>,,,,...........,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg............uuaauAgUAgggaaagaCGguuuc.gccCGUUAu...........Uga 152 ++::C: GAG: C: :: CGAA+ A A UAG :: :GACGG U ++CCGUUAU fig|467705.9.peg.1388 695 --CACAUUCUUGAGU-GCGGGUGCGAAAucugucaguagaCCGAGACUAGUGCUCGACGGCUGAuUACCGUUAUcaaucuggaguCCC 779 ..8888*********.9**********8899*******9999999999**************9999*******************889 PP NC ,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 153 uuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UA + AGAG ::::U:+++ A U:A:::: AAA +A:GGUGG ACCGCG: U A :CGUCC:U + fig|467705.9.peg.1388 780 GUACUCCCAGAGGGUCCUCAGGCGACUGAGGGCUAAAuAAAGGUGGAACCGCGU--GUCA--ACGUCCUUGCA 848 99999*****************************8877***************9..6666..9********** PP >> fig|525379.3.peg.447 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus equinus ATCC 9812] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.3e-19 74.6 0.0 cm 1 224 [] 722 950 + .. 0.87 no 0.47 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 A+AAAA:CA UGA+:G::A A:::: : +C A :+ ACAGAGAG ::::G+U GGUGAGA :::: U : +A : ::::GA fig|525379.3.peg.447 722 AAAAAAGCAGUGAUAGAAAG----AGCCUGAGAC---AACAAACAGAGAGUGCUUGAU-GGUGAGAaAAGCGU-GCAAUCCUUGGGCGA 801 ******************44....5999999964...4445799*****999999998.*******9999999.5566689999****9 PP v v NC ------>>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<____.__>>>,,,,.............,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuuc.gccCGUUAu.............Ugauuauaua 159 ++::C: GAG: C:U:: CGAA +U A AGUAG ::A:GACG +U + CGUUA G + U ++ fig|525379.3.peg.447 802 --CACAUUCUUGAGU-GCGUGUGCGAACucuuAUGACAGUAGUACACGACGCGUGGuCUACGUUACagacuagaagucaCGUACUUCAU 887 ..8888*********.9**********77999*******************99998899******************765566666666 PP v v NC ,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +AGAG::: : : + A UU: : :::AA+ + :GGUGG ACC:CG : U+A : CG:CC: + fig|525379.3.peg.447 888 GAGAGCAGUAAAGGCGACUUUCUGCUGAAUcAGAGGUGGAACCACGUU--UUA-AGCGUCCUUGCA 950 666666666666666666666666666*********************..99*.************ PP >> fig|873449.3.peg.1675 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate am rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.7e-17 65.7 0.0 cm 1 224 [] 712 931 + .. 0.84 no 0.50 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AAAA C+AUGA :G: A AAG : ::A: + A::: ACAGAGAG:::: GUUG+UGAGA +::::U::: :U:: : fig|873449.3.peg.1675 712 CGAAAAACGAUGAGAGA-ACAAGCGCUAAAUCA----ACUG-ACAGAGAGUGCC--GUUGCUGAGAaAGGCAUCUGG----AUUUGGC 787 *************9877.599996533333333....2333.599999988887..688******965788884332....3333333 PP v v NC ------->>>>--->>,,<<<<<<<___.__________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAA.guuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGa 163 A A :C: GAG C:::: CGAA G UAA AGUAG ::::GACGG+U ++CCGUUA+ + U A +U A GA fig|873449.3.peg.1675 788 CACACA-GUCUUGAGC-GCAGGUGCGAAcGCUAACAGUAGUGCCUGACGGGUGGUUCCGUUAAaagccagaaguCUUUGACUUCACGA 873 353555.5778999*8.9**********88*******************************************98889999999**** PP NC ,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 164 GguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GG :: ::++++ A U:: :: C AA+UA:GGUGG ACC:CG: :CG:CC:U + fig|873449.3.peg.1675 874 GGGAAGACAGGUGACUGUUUUUCgAAUUAAGGUGGAACCACGUU---GC-GACGUCCUUGCA 931 ***********************9999***************96...34.69********** PP >> fig|1123309.3.peg.514 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus minor DSM 17118] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.1e-23 89.1 0.0 cm 1 224 [] 721 949 + .. 0.95 no 0.48 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A+ AAA:C+AUGA+:G::AA A:U::A: +C + A: ACAGAGAG:::: GG GGUGAGA ::::U :+A :U::A:GA fig|1123309.3.peg.514 721 AAGAAAGCGAUGAUAGAAAA----AGUCUAAGACAACAG---ACAGAGAGUGCCCGGG-GGUGAGAAGGCAU-GCAAUCCUUAGACGA 799 ******************77....4******98666665...79***********999.*************.5777799*******9 PP NC ------>>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuucgccCGUUAu..............Ugauuauau 158 ++::C: GAG: C:U:: CGAA+ + A+A UAG ::A:GACGG+U ++CCGUUA+ U+ U A +U fig|1123309.3.peg.514 800 --CACAUUCUUGAGU-GCGUGUGCGAAAucgaAAGAAACUAGUGCACGACGGGUGGUUCCGUUAAcaacccggacucauUUUUGAGUU 884 ..8888*********.9**********889999999*******************************************9999***** PP v v NC ,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+GAGG ::: G A++ AUUC ::: C AAA +A:GGUGG ACC:CG: U+A :CG:CC:U + fig|1123309.3.peg.514 885 CAUGAGGGCAGGGGAGUGAUUCUCUGUCgAAAcAAAGGUGGAACCACGUU--UUA-UACGUCCUUGCA 949 *****************************5556****************8..999.8*********** PP >> fig|210007.1.peg.1162 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus mutans UA159] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-18 71.7 0.1 cm 1 224 [] 725 954 + .. 0.92 no 0.43 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A AAAA:C+AUGA :G::AAAA A::U:A:A+ C++A ACAGAGA::::G GG +G+UGA+A+C:::: A+AAA :U:A:: A fig|210007.1.peg.1162 725 AGAAAAGCGAUGAGAGAAAAAA--AUCUAAGAAACAAA----ACAGAGAGUAUG-GGAAGCUGAAAACAUAC--AAAAAGCUUAGAUA 803 ******************9998..89999999877777....7***********.5566*************..45558999999999 PP v v NC ------>>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<____.__>>>,,,,..........,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuuc.gccCGUUAu..........UgauuauauaaA 161 A ++::C: GAG: C: :: C AA+ + A+AGUAG :: :GACG +UU +C CGUUA U+ ++A + + fig|210007.1.peg.1162 804 A-CACAUUCUUGAGU-GCGGGUGCCAAAucguAGGAAAGUAGUGCUCGACGGGUUAuUCACGUUACgaauaggaguUUCAAACUCCCU 889 9.9999*********.9**********88999999*****************99998899****************999999999999 PP v v NC ,,,<<<<<<<___._____>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 162 GaGguuguuguaa.aaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 GAG :U::::U + + A +::::A: AA+ A:GGUGG ACC:CG + U CG:CC:U + fig|210007.1.peg.1162 890 GAGGGUAGUCUUGgUGACAGGCUACUgAAUGAAGGUGGAACCACGUGUGUGUCAGCGUCCUUGCA 954 **9999999977668999999999999999****************986666789********** PP >> fig|59310.6.peg.1476 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus macedonicus] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-18 71.5 0.0 cm 1 224 [] 713 950 + .. 0.93 no 0.49 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGA 88 AUAAAAG:++UGA+:G::AA A:::: : +C + A: ACAGAGAG ::::GGU GGUGAGA :::: U :+A : ::::GA fig|59310.6.peg.1476 713 AUAAAAGUGUUGAUAGAAAA----AGCCUGAGACAACAG---ACAGAGAGUGCUUGGU-GGUGAGAaAAGCGU-GCAAUCCUUGGGCGA 792 ******************77....4******98666665...79*************9.*******9******.577778999****** PP v v NC ------>>>>--->>,,<<<<<<<____............._________>>>>>>>,<<<____..__>>>,,,,...........,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg.............uuaauAgUAgggaaagaCGguuuc..gccCGUUAu...........Ug 151 ++::C: GA:C C:U:: CGAA U A AGUAG ::A:GACG +U C CGUUA fig|59310.6.peg.1476 793 --CACAUUCUUGAGC-GCGUGUGCGAACucagcugauagagCUGACAGUAGUGCACGACGGGUGGuuCCACGUUACggagcagaaguCA 878 ..8888*********.9**********779******************************9999877889*****************88 PP NC ,,,,,,,,,,,,,<<<<<<<___._____>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 152 auuauauaaAGaGguuguuguaa.aaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UA +U A+GAG:::::::UA+ A U::::::: AA+ + :GGUGG ACC:CG:: U+ ::CG:CC: + fig|59310.6.peg.1476 879 UGUACUUCAUGAGAACAGUCUAGgCGACUGGCUGUUgAAUcAGAGGUGGAACCACGUU--UU--AACGUCCUUGCA 950 99999***************988789999*******9999*****************6..33..7*********** PP >> fig|699248.3.peg.714 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate ami rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7.4e-15 57.2 0.0 cm 1 224 [] 685 954 + .. 0.92 no 0.49 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--...........................................--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUa...........................................cAG 46 A AAA:C+A GA :G::AA A:U::A: UC : U CAG fig|699248.3.peg.714 685 AGGAAAGCGACGAGAGAAAA----AGUCUAAGUCACCGGU-U-ggguuacaggcacagacaagcuguuauaucuauccggcagcaaCAG 767 ******************66....4999999884333222.2.468889**************************************** PP v v v v NC ---<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____...._________>>>>>> CS T-box 47 AGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaa 131 AGA::::G GG +G+UGA+A+C:::: : +AA :U::A:GA ++::C: GAG: C: :: C AA+ + A+AGUAG :: : fig|699248.3.peg.714 768 AGAGUAUG-GGAAGCUGAAAACAUACGUAAAA-CUUAGACGA--CACAUUCUUGAGU-GCGGGUGCCAAAucuuAGGAAAGUAGUGCUC 851 ********.5566*************776666.899999999..8888*********.9**********889999999*********** PP v v v NC >,<<<____.__>>>,,,,..........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<_ CS T-box 132 gaCGguuuc.gccCGUUAu..........UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGaga 207 GACG +U+ +C CGUUA U+ ++A + +GAG ::::::U++ A :::::: AA+ A:GGUGG ACC:CG fig|699248.3.peg.714 852 GACGGGUAAuUCACGUUACggauuggaguUUCAAACUCCCUGAGGGCAGUCUGGCGACGGGCUGCUgAAUuGAAGGUGGAACCACGUC- 939 ******9998899****************9************************************999999***************8. PP v NC _____>>>>>>>>>::: CS T-box 208 AuaAUcuCGuCCcuUuu 224 U A CG:CC:U + fig|699248.3.peg.714 940 -UCA-AGCGUCCUUGCA 954 .889.89********** PP >> fig|997356.4.peg.389 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus sanguinis ATCC 29667] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-19 75.4 0.0 cm 1 224 [] 615 847 + .. 0.93 no 0.51 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 +U AAA:C+AUGA :G::AA A:U:: : + A : ACAGAGAG:::: +U GGUGAGA ::::U : + : ::A:GA fig|997356.4.peg.389 615 UUGAAAGCGAUGAGAGAAAA----AGUCUGAGA---CAAGAAACAGAGAGUGCCUAAU-GGUGAGACGGCAUGCAAU-CCUUAGACGA- 693 ******************76....4***99996...4444579***********9999.*************65544.58899****9. PP NC ----->>>>--->>,,<<<<<<<____............_________>>>>>>>,<<<____.__>>>,,,,...........,,,,, CS T-box 90 aauugCCccgGAGcaucuuucccGAAg............uuaauAgUAgggaaagaCGguuuc.gccCGUUAu...........Ugauu 154 ++::C: GAG: C:::: CGAA+ U A A UAG ::::GACGG U + CCGUUAU + U fig|997356.4.peg.389 694 -CACAUUCUUGAGU-GCGGAUGCGAAAucugucaguagaCUGAGACUAGUGUCCGACGGCUGAuUGCCGUUAUcaaucuggaguCUCGU 780 .8888*********.9**********889**********999*******************99899******************99999 PP v v NC ,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 155 auauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A + AGAGG: ::::+++ A U:::: :C AA++A:GGUGG ACCGCG: U A :CGUCC:U + fig|997356.4.peg.389 781 ACUCCCAGAGGGUCCUCAGGCGACUGGGGUCCgAAUAAAGGUGGAACCGCGU--GUCA--ACGUCCUUGCA 847 9*******************************9999***************9..6666..9********** PP >> fig|1034346.3.peg.1057 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Clostridiaceae bacterium JC11 rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3e-34 132.3 0.0 cm 1 224 [] 729 965 + .. 0.97 no 0.44 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 A+ AA+G: A GA :GG:AA+AGUA:: C:: :::UA AGAGA:C:::CG UUGGUG +AG:::G::::U A+::G ::G fig|1034346.3.peg.1057 729 AAUAAUGUUAAGACUGGAAAGAGUAGAGCUGG---GCGCAGUAUAGAGAGCUUUCGUUUGGUGGAAGAAAGCCUGUUUAACAGUUUG 812 *******************************9...699************************************************* PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____....__>>>,,,,..............,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc....gccCGUUAu..............Ugauuau 156 AA ++:CC: GA:CA ::::: :GAA + +AGUA: :::::ACGG+U C +CCGUUAU U+ UA fig|1034346.3.peg.1057 813 AA-CACAUCCACGAGCAGUCAGGGUGAA---UGAAGUAAUCCUGAACGGGUCCcugcAUCCGUUAUcaugcuagaguaugUUUGUAC 895 **.*************************...999*****************99999999*********************99***** PP NC ,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____.._>>>>>>>>>::: CS T-box 157 auaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA..UcuCGuCCcuUuu 224 +U AAGAG UUG ::U ++ A +:: CAA AAA UA:GGUGG ACC:CGA: U A U:UCG:CC:U fig|1034346.3.peg.1057 896 UUGAAGAGGUUGGCAUUGUGAGAUGUCAAUAAAaUAAGGUGGAACCACGAAG-UCAgcUUUCGUCCUUAGG 965 ******************************7777*****************5.444589************ PP >> fig|1050201.3.peg.492 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Allobaculum stercoricanis DSM rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.6e-30 115.5 0.0 cm 1 224 [] 664 886 + .. 0.97 no 0.45 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + A :CAAUGAA:G:: +AGUAA:: :: +A:U:U+ AGAGAGC::::GGU GGUG +A::::GU:A: AA :: ::UGA fig|1050201.3.peg.492 664 UCAGCGACAAUGAAGGAA-CGAGUAAAAUCGG---GAAUUGUUUAGAGAGCUUCUGGUGGGUGGAAAGAAGUCAUGAA-CCGUUUUGA 746 ******************.************9...6999**********************************99999.9******** PP v v NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAGaG 164 AA ++::C:GGAG: ::UUC GAA A GAA:: CGG+ U CCCGUUAU U A+ A + AGAG fig|1050201.3.peg.492 747 AACACAUUCUGGAGUCGGAUUCAGGAA---------AUGGAAUCCCGGAGU-CCCCGUUAUcggauguacuguUCAACAGUCGUAGAG 824 ***************************.........999***********9.99*******************99999********** PP NC <<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____._>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA.UcuCGuCCcuUuu 224 :U::U:U ++ A :A::A: AAA +A:GGUGG A C:CG::A U+A U::CG:CC:UU fig|1050201.3.peg.492 825 GCUACUUUCGUGAGGAAGUAGUAAAuAAAGGUGGGAACACGGAAUUUAcUUUCGUCCUUUGG 886 **********************8877*****************977778************* PP >> fig|1123313.3.peg.331 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Streptococcus pleomorphus DSM rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.2e-35 137.6 0.4 cm 1 224 [] 733 965 + .. 0.99 no 0.40 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A AAGCA UGA+:GG:AA+AGUA:U::A:A+ U+ ::UU AGAGA :::::GG UGGUGA+A::::: A:: A U:U::A:GA fig|1123313.3.peg.331 733 GCAUAAGCAGUGAUAGGAAAGAGUAGUAUAAAAGAUACGUUUCAAGAGACUUUCUGGCUGGUGAAAAGAAAGAGCGAC-UUUAUAUGA 819 ****************************************************************************99.9******** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..............UgauuauauaaAG 162 A ++:CC:GGAGC+ :: :: CGAA + AA AGUAG :: :: CGG+U+C CCCGUUAU U+A UA +U A+G fig|1123313.3.peg.331 820 A-CACAUCCUGGAGCUAUGUCGGCGAA-AGAACAGUAGUUGGCAUCGGGUACACCCGUUAUuguguuagaguaugUUAGUACUUGAUG 905 *.*************************.9999******************************************************** PP NC ,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 163 aGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AG: ::U::U ++AA +::A:: : AA UA:GGUGG ACC:CG:: A ::CG:CC:U U+ fig|1123313.3.peg.331 906 AGAUCAUUAUCGUAAGAUGAUGGUgAAGUAAGGUGGAACCACGUU--GAU-AACGUCCUUAUA 965 ************************8888****************9..777.9*********** PP >> fig|428127.7.peg.105 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Eubacterium dolichum DSM 3991] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7.1e-31 119.2 0.0 cm 1 224 [] 740 963 + .. 0.97 no 0.42 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 ++ AAA:C++ GAA::G:AA AGUA: ::: A::UUACAGAGA:CC:::GGUUGGUG +A:::GG:A:: +AA ::: :GAA fig|428127.7.peg.105 740 UAUAAAGCGUGGAAAAGAAAUAGUAGGGAUAU---GGACAUUACAGAGAACCUUUGGUUGGUGGAAAAAGGUAUGCGAAGUAUUUUGAA 825 *******************************9...79**************************************************** PP v v NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,............,,,,,,,,,,,,,,,< CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu............UgauuauauaaAGaGg 165 ++:C::GGAG: CU:+:::GAA AA+AGUA::: :AGACG:UUU +:CGUUA U UUA + + AGAGG fig|428127.7.peg.105 826 -CACAUCUUGGAGU-GCUGAGGUGAA---AAAAGUAGCC-CAGACGUUUUGcAUACGUUACccugcugaguauUCGUUACUCUUAGAGG 908 .*************.9**********...9999999998.8*******999899*******************999************* PP v v NC <<<<<<________>>>>>>>.,,,,<<<<-------<<<<<_____.._>>>>>>>>>::: CS T-box 166 uuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaA..UcuCGuCCcuUuu 224 :: U:: U::A ::C AAAUA:GGUGG ACC:CG :A +A U: CG:CC:UU fig|428127.7.peg.105 909 CAGUCA-------UUGAUUGCgAAAUAAGGUGGAACCACGUAAGCUAgcUUUCGUCCUUUAG 963 ****99.......799*****9999*****************97777799************ PP >> fig|518637.5.peg.49 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Eubacterium biforme DSM 3989] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.2e-33 126.7 1.2 cm 1 224 [] 763 968 + .. 0.92 no 0.37 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>---- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAa 90 +U AAAGCAAUGAA::G:AA AGUAA ::A: + :UU+ AGAGA :::::GGUUGGUG +A::::: A: +A+ :U:: UGAA fig|518637.5.peg.49 763 UUCAAAGCAAUGAAAAGAAAUAGUAAGAUAGUA---CUGCUUUAAGAGACUUUCUGGUUGGUGCAAAGAAAGAGUAAG-GCUAUUUGAA- 847 *******************************95...66999*******************************999988.7*********. PP NC ---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,,,,,,,,,,,,,,,,<<<<<~~~~~~>>>> CS T-box 91 auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAuUgauuauauaaAGaGguugu*[12]*acaa 185 +G:C::GGAGC+ :::::::GAA AAUAGUA:::::::ACG:+UUC + :CGUUA U + + +GAGG:U:U A:A: fig|518637.5.peg.49 848 CACGUCUUGGAGCUGUAAAGAUGAA---AAUAGUAGUUUUUAACGUAUUCcUGGCGUUA-----UCAGGUUUGAGGCUAU*[ 2]*AUAG 925 *************************...999*******************999******.....6666677888987776...3..6777 PP v v NC >.,,,,<<<<-------<<<<<_.____..._>>>>>>>>>::: CS T-box 186 c.AAauagGGUGGUACCgCGaga.AuaA...UcuCGuCCcuUuu 224 C AAAUA:GGUGG ACC:CG :A U+A U: CG:CC:U fig|518637.5.peg.49 926 CgAAAUAAGGUGGAACCACGUAAg-UUAaacUUUCGUCCUUAGG 968 87999******************6.333479************* PP >> fig|717960.3.peg.913 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Eubacterium cylindroides T2-87] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.2e-35 134.2 5.0 cm 1 224 [] 729 965 + .. 0.98 no 0.38 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 AUA A GC GAA::G:AA AGUA :::A: U UU UUUUA AGAGAG:::::GG UGGUGA+A:::::UAAA AA++:U::: GAA fig|717960.3.peg.913 729 AUAUAGGCUGGGAAGAGAAAUAGUAAGAUAGUU-AUUUUUUUAAAGAGAGUUCUUGGCUGGUGAAAAAGAAUAAAGAAGACUAUCAGAA 816 ********************************9.899999************************************************* PP NC ----->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,,,,,,,, CS T-box 90 aauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..............UgauuauauaaAGaG 164 ++:C::GGAGC+ ::U:: :GAA ++ AGUA: ::A:: CGGU + +CCGUUA+ U+A UA +U A+GAG fig|717960.3.peg.913 817 -CACAUCUUGGAGCUGUAUGGGUGAA---UUGAGUAAUCCAUAUCGGUCGUCACCGUUAAaagacaagaguaugUUAGUACUUGAUGAG 901 .*************************...999********************************************************* PP v v NC <<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<_.____..._>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGaga.AuaA...UcuCGuCCcuUuu 224 :: :U: ++ A :A: :: AAA+A:GGUGG ACC:CG :A U+A U: CG:CC:U fig|717960.3.peg.913 902 GCAGAUACCGUGAGGUAUUUGUgAAAAAAGGUGGAACCACGUAAg-UUAaacUUUCGUCCUUAGG 965 **********************9999******************6.333479************* PP >> fig|999413.4.peg.141 Histidine ABC transporter, permease protein [Clostridium innocuum 2959] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.6e-14 54.3 0.0 cm 101 224 ~] 1 164 + ~. 0.94 5' 0.48 ?? NC ~~~~~~~->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................................. CS T-box 1 <[100]*AGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................................. 149 AGC+ C:::: CGAA + AA AGUAG ::::G CGGUU ++CCGUUA fig|999413.4.peg.141 1 <[ 0]*AGCUGCAGAUGCGAA-ACAACAGUAGUGUCUGCCGGUUGAUUCCGUUACcgaucaaagugaugcuuccaugacgaugagcau 81 .......***************.9***************************************************************** PP v v NC ..,,,,,,,,,,,,,,,<<<<<<<___._____>>>>>>>,,,.,<<<<-------<<<<<_..____...._>>>>>>>>>::: CS T-box 150 ..UgauuauauaaAGaGguuguuguaa.aaAUucaacaacAAa.uagGGUGGUACCgCGaga..AuaA....UcuCGuCCcuUuu 224 U AU A +UA +GAG U:::::U AA :::::A AAA U::GGUGG ACC:CG :A AA U: CG:CC::U fig|999413.4.peg.141 82 gaUCAUCACUUACUGAGGUCAGUUUCCgCAAGGAGCUGAUAAAuUGAGGUGGAACCACGUAAgc--AAcagcUUUCGUCCUCUGG 164 **999999**************9977647777899*****7777*****************955..44459************** PP >> fig|999413.4.peg.2607 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) [Clostridium innocuum 2959] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-32 125.7 0.0 cm 1 224 [] 717 955 + .. 0.97 no 0.46 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 + AAA+GC+ UGA GGG:AA AGUA : ::: A::U ACAGAGAG:C::CGG UGGUG +AG::G:UA:: +AA ::: : GA fig|999413.4.peg.2607 717 UGAAAUGCGCUGACGGGAAAUAGUAUGGAUAU---GGACAUGACAGAGAGUCUUCGGCUGGUGGAAGAAGAUAUGCGAAGUAUGCGGA 801 *******************************9...79*************************************************** PP NC ------>>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____....__>>>,,,,..............,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc....gccCGUUAu..............Ugauuauau 158 A ++:CCC GAGCA C::::::GAA ++ AGUA::::::G CGG+ UC +CCGUUA + UA + fig|999413.4.peg.2607 802 A-CACAUCCCCGAGCAGCAGAGGUGAA--AUUCAGUAGCUUCUGCCGGAAUCcugcAUCCGUUACcgugcuagaguaugCUGGUACUC 886 *.*************************..7888******************9999999*********************8899999** PP v v NC ,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_.____._>>>>>>>>>::: CS T-box 159 aaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGaga.AuaA.UcuCGuCCcuUuu 224 AAGAG:UUG:U:U ++ A :A:CAA:AAA UA:GGUGG A C:CG :A UAA U: CG:CC:UU fig|999413.4.peg.2607 887 GAAGAGAUUGAUAUCGUGAGGUAUCAAUAAAaUAAGGUGGAAUCACGUAAgGUAAcUUUCGUCCUUUGG 955 ****************************7777******************7666689************ PP >> fig|1076934.5.peg.1324 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus lutetiensis 033] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.1e-20 79.7 0.0 cm 1 224 [] 716 946 + .. 0.92 no 0.45 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaau 86 A+AAAA:C+AUGA+:G::AA A::::A: +C + A: ACAGAGAG:::::GGU GGUGAGA :::::U :+A :U:::: fig|1076934.5.peg.1324 716 AAAAAAGCGAUGAUAGAAAA----AGCCUAAGACAACAG---ACAGAGAGUGCUUGGU-GGUGAGAaAAGCAU-GCAAUCCUUAGGC 793 ******************77....4*******8666665...79*************9.*******9******.677779******* PP v v NC -------->>>>--->>,,<<<<<<<____....._________>>>>>>>,<<<____..__>>>,,,,...........,,,,,, CS T-box 87 GAAaauugCCccgGAGcaucuuucccGAAg.....uuaauAgUAgggaaagaCGguuuc..gccCGUUAu...........Ugauua 155 GA ++::C: GAG: C:U:: CGAA U UAGUAG ::A:GACG +U C CGUUA +A UA fig|1076934.5.peg.1324 794 GA--CACAUUCUUGAGU-GCGUGUGCGAAUgcuucUAGCUAGUAGUGCACGACGGAUGGauCCACGUUACggauuagaaguCUAGUA 877 **..8888*********.9**********779***99*******************99988889*****************888999 PP NC ,,,,,,,,,<<<<<<<___._____>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 156 uauaaAGaGguuguuguaa.aaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +U A+GAG: :::::+A+ + A U::::: : AA+ +A:GGUGG ACC:CG:: + ::CG:CC:U + fig|1076934.5.peg.1324 878 CUUCAUGAGAGCAGUUAAGgUGACUUGCUGUUgAAUcAAAGGUGGAACCACGUU--GUU-AACGUCCUUGCA 946 999999999999998877668888889999998999*****************9..777.9*********** PP >> fig|1123298.3.peg.206 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus caballi DSM 19004] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.3e-22 85.2 0.0 cm 1 224 [] 724 952 + .. 0.94 no 0.45 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 AU AAA C++UGA :G::AA A:U::A: +C + A: ACAGAGAG:::: +U+GGUGAGA ::::U :+A A :U::A:GA fig|1123298.3.peg.206 724 AUGAAAUCGUUGAGAGAAAA----AGUCUAAGACAACAG---ACAGAGAGUGCCC-AUAGGUGAGAAGGCAU-GCAAUACUUAGACGA 802 ******************77....4*******8666665...79******99995.777*******999999.677779********* PP v NC ------>>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<______>>>,,,,...............,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuucgccCGUUAu...............Ugauuaua 157 ++::C: GAG :::: CGAA+ A GUAG :::: ACGG+UU ++CCGUUA+ U U A + fig|1123298.3.peg.206 803 --CACAUUCUUGAGU-GUACAUGCGAAAucgcGAGAGUGUAGUGUGUGACGGGUUGUUCCGUUAAaggcugggagucuuaUACUGACU 887 ..8888********8.99*********8799988899999************************************************ PP v v NC ,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 158 uaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U ++GAG::U:::: +++ A U::::A:: AA+UA:GGUGG ACC:CG: U A :CG:CC:U + fig|1123298.3.peg.206 888 UCGUGAGAGUAAAUGGGUGACUAUUUACUgAAUUAAGGUGGAACCACGCC--UCA-AGCGUCCUUGCA 952 *****************************9999****************8..999.8*********** PP >> fig|1123303.3.peg.768 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus ferus DSM 20646] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-20 79.5 0.0 cm 1 224 [] 713 942 + .. 0.93 no 0.47 vv v v vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A AAAA:C+AUGA+GG::AA A:U::A: + AU + AGAGA::::G GG G+UGA+A C::::A A++A :U::A:GA fig|1123303.3.peg.768 713 AGAAAAGCGAUGAUGGAAAA----AGUCUAAGAAGCCAU---UUAGAGAGUAUGGGGA-GCUGAAAACAUACACAAGA-CUUAGACGA 791 ******************77....4******99555554...479*********8777.*************766666.9******** PP v v NC ------>>>>--->>,,<<<<<<<____......_________>>>>>>>,<<<____.__>>>,,,,..........,,,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg......uuaauAgUAgggaaagaCGguuuc.gccCGUUAu..........Ugauuauaua 159 ++::CC GAG: C:: : CGAA+ U AA AGUAG : ::GACG +UU +C CGUUA U+ ++A + fig|1123303.3.peg.768 792 --CACAUUCCUGAGU-GCAGGUGCGAAAuggacuUCAAGAGUAGUAUCUGACGGGUUAuUCACGUUACgaaucggaguUUCAAACUCC 876 ..8888*********.9**********889************************99998899****************9********* PP v v NC ,,,,,<<<<<<<___._____>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 160 aAGaGguuguuguaa.aaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AGAGG:::::: + + A +::::::C AA+ +A GGUGG ACC:CG:G U A C:CG:CC U + fig|1123303.3.peg.768 877 CAGAGGGCAGUUCUGgUGACAGGCUGCCgAAUcAAUGGUGGAACCACGUG--UCAACACGUCCUUGCA 942 **********99776699999*******99999999**************..5555************ PP >> fig|1123304.3.peg.2073 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus henryi DSM 19005] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.9e-20 76.9 0.0 cm 1 224 [] 721 948 + .. 0.94 no 0.48 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 AUAAAA:C+AUGA+:G::AA A:U::A: +C + A: ACAGAGAG:::: +U GGUGAGA ::::U :+A :U::A:G fig|1123304.3.peg.2073 721 AUAAAAGCGAUGAUAGAAAA----AGUCUAAGACAACAG---ACAGAGAGUGCCC-AUGGGUGAGAAGGCAU-GCAAUCCUUAGACG 798 ******************77....4******98666665...79******99995.677*******999999.6777799******* PP v v NC ------->>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<____..__>>>,,,,...........,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuuc..gccCGUUAu...........Ugauuaua 157 A ++::C: GAG: C:U : CGAA+ U A AGUAG : A:GACG UU+ +C CGUUA UA + fig|1123304.3.peg.2073 799 A--CACAUUCUUGAGU-GCGUGUGCGAAAucaaGUGAGAGUAGUGUACGACGGUUAAcuUCACGUUACgaagucgaaguCCCGUACU 882 9..8888*********.9**********889999********************9999999******************99999*** PP v v NC ,,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 158 uaaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U A+GAG ::: U:U++ A :A ::: AA +A:GGUGG ACC:CG: U A :CG:CC:U + fig|1123304.3.peg.2073 883 UCAUGAGGGCAGUCUGGCGACGGAUUGCUgAACcAAAGGUGGAACCACGCA--UCA-AGCGUCCUUGCA 948 *****************************8888*****************7..999.7*********** PP >> fig|1123311.3.peg.2129 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus orisratti DSM 15617] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.2e-19 74.7 0.0 cm 1 224 [] 724 952 + .. 0.95 no 0.50 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 ++ AAA:C+AUGA :G:: AG ::U:A:A+ + ACAGAGAG:::: GG GGUGAGA ::::U AA+ :U:A:: fig|1123311.3.peg.2129 724 UAUAAAGCGAUGAGAGAA---AGCGUCUAAGACAACAG----ACAGAGAGUGCCCGGG-GGUGAGACGGCAU--GCAAUCCUUAGAC 800 ******************...99999999999854444....79**********9998.*************..4666899999999 PP v v NC ------->>>>--->>,,<<<<<<<____......_________>>>>>>>,<<<____.__>>>,,,,............,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAg......uuaauAgUAgggaaagaCGguuuc.gccCGUUAu............Ugauua 155 AA ++::C: GAG: C:U:: C+AA+ UU A AGUAG ::A:GACG U +C CGUUA U +UA fig|1123311.3.peg.2129 801 AA-CACAUUCUUGAGU-GCGUAUGCAAAAucaaggUUGAGAGUAGUGUACGACGGUGGGuUCACGUUACgaaucagaagucUCGAUA 885 99.9************.9**********889**********************9988876889************************ PP v v NC ,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 156 uauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +U ++GAG::::: :+++ A U: ::::: AA UA:GGUGG ACC:CG: U A :CG:CC:U + fig|1123311.3.peg.2129 886 CUUCGUGAGAGCAGGUAGGCGACUGUCUGCUgAACUAAGGUGGAACCACGCC--UCA-AGCGUCCUUGCA 952 *******************************8888****************8..999.8*********** PP >> fig|1123312.3.peg.1730 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus ovis DSM 16829] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.3e-22 86.2 0.0 cm 1 224 [] 692 921 + .. 0.94 no 0.47 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauG 87 AU AAA:C+AUGA :G::AA A:U::A: +C + : ACAGAGAG:::: + GGUGAGA ::::U :+A :U::A:G fig|1123312.3.peg.1730 692 AUUAAAGCGAUGAGAGAAAA----AGUCUAAGACAACGG---ACAGAGAGUGCCCAAG-GGUGAGAAGGCAU-GCAAUCCUUAGACG 769 ******************76....4******98555554...79**********8776.*************.5777789******* PP NC ------->>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<______>>>,,,,................,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuucgccCGUUAu................Ugauu 154 A ++::C: GAG: C:U:: C+AA+ UU A AGUAG ::A:GACGG+U ++CCGUUA + + fig|1123312.3.peg.1730 770 A--CACAUUCUUGAGU-GCGUGUGCAAAAuguaUUGAGAGUAGUACACGACGGGUGGUUCCGUUAGcgaccagagcuuccauGUGGA 853 9..8888*********.9**********8899*************************************************988899 PP v v v v NC ,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 155 auauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A +U A+GAGG: ::::+A++AAUU:::: :C AA+ A:GGUGG ACC:CG: + :CG:CC:U + fig|1123312.3.peg.1730 854 AGUUCAUGAGGGGAAGAAAGUAAUUUCUUGCCgAAUCAAGGUGGAACCACGCA--GUU-AGCGUCCUUACA 921 9999****************************9999****************6..666.6*********** PP >> fig|1304.245.peg.580 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus salivarius strain ATCC 27945] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.2e-20 79.6 0.0 cm 1 224 [] 670 905 + .. 0.94 no 0.48 vvv v v vvv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>--- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAA 89 + AAA:C++UGA+:G::AAA :U: ++ U U ACAGAGA::::G GG +G+UGAGA+C:::: A + A+ :A:GA fig|1304.245.peg.580 670 UCGAAAUCGUUGAUAGAAAAA----GUCAGA----UCGUUUCACAGAGAAUGCG-GGAAGCUGAGAACGCAUGAGAUCAA--AGACGA- 746 ******************663....888766....8899999************.5666*************77777666..688999. PP NC ----->>>>--->>,,<<<<<<<____....._________>>>>>>>,<<<______>>>,,,,........................ CS T-box 90 aauugCCccgGAGcaucuuucccGAAg.....uuaauAgUAgggaaagaCGguuucgccCGUUAu........................ 149 ++::C: GAG: C:U:: CGAA +U A AGUAG ::A:GACGG+U ++CCGUUA fig|1304.245.peg.580 747 -CACAUUCUUGAGA-GCGUAUGCGAACucuggAUGACAGUAGUGUACGACGGGUGGUUCCGUUAGagacuaggaguuauaagagagacc 833 .8888********9.9**********779************************************************************ PP v v NC ,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 U+ U A +U A+GAGG:: ::G +++ A C:: ::C AA+UA:GGUGG ACC:CG: A :CG:CC:U + fig|1304.245.peg.580 834 UUGUGACUUCAUGAGGAAGAGGGGGUGACCCCUGUUCgAAUUAAGGUGGAACCACGU--GCCA--ACGUCCUUGCA 905 99***********************************9999***************9..5555..9********** PP >> fig|471872.6.peg.1490 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus infantarius subsp. infantari rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.6e-20 79.1 0.0 cm 1 224 [] 809 1039 + .. 0.92 no 0.45 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>> CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaa 85 ++AAAA:C+AUGA+:G::AA A::::A: +C + A: ACAGAGAG:::::GGU GGUGAGA :::::U :+A :U::: fig|471872.6.peg.1490 809 UAAAAAGCGAUGAUAGAAAA----AGCCUAAGACAACAG---ACAGAGAGUGCUUGGU-GGUGAGAaAAGCAU-GCAAUCCUUAGG 885 ******************77....4*******8666665...79*************9.*******9******.677779****** PP v v NC >-------->>>>--->>,,<<<<<<<____....._________>>>>>>>,<<<____..__>>>,,,,...........,,,, CS T-box 86 uGAAaauugCCccgGAGcaucuuucccGAAg.....uuaauAgUAgggaaagaCGguuuc..gccCGUUAu...........Ugau 153 :GA ++::C: GAG: C:U:: CGAA U UAGUAG ::A:GACG +U C CGUUA +A fig|471872.6.peg.1490 886 CGA--CACAUUCUUGAGU-GCGUGUGCGAAUgcuucUAGCUAGUAGUGCACGACGGAUGGauCCACGUUACggauuagaaguCUAG 968 ***..8888*********.9**********779***99*******************99988889*****************8889 PP NC ,,,,,,,,,,,<<<<<<<___._____>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 154 uauauaaAGaGguuguuguaa.aaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UA +U A+GAG: :::::+A+ + A U::::: : AA+ +A:GGUGG ACC:CG:: + ::CG:CC:U + fig|471872.6.peg.1490 969 UACUUCAUGAGAGCAGUUAAGgUGACUUGCUGUUgAAUcAAAGGUGGAACCACGUU--GUU-AACGUCCUUGCA 1039 99999999999999998877668888889999998999*****************9..777.9*********** PP >> fig|637909.5.peg.1466 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus gallolyticus UCN34] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-19 75.6 0.0 cm 1 224 [] 711 949 + .. 0.94 no 0.49 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AUAAAAG:++UGA+:G::AA A:::: : +C + A: ACAGAGAG ::::GGU GGUGAGA :::: U :+A : ::::G fig|637909.5.peg.1466 711 AUAAAAGUGUUGAUAGAAAA----AGCCUGAGACAACAG---ACAGAGAGUGCUUGGU-GGUGAGAaAAGCGU-GCAAUCCUUAGGCG 789 ******************77....4******98666665...79*************9.*******9******.577778999***** PP v v NC ------->>>>--->>,,<<<<<<<____............._________>>>>>>>,<<<____..__>>>,,,,........... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAg.............uuaauAgUAgggaaagaCGguuuc..gccCGUUAu........... 149 A ++::C: GA:C C:U:: CGAA U A AGUAG ::A:GACG +U C CGUUA fig|637909.5.peg.1466 790 A--CACAUUCUUGAGC-GCGUGUGCGAACucagcugauagagCUGACAGUAGUGCACGACGGGUGGuuCCACGUUACggagcagaagu 874 *..8888*********.9**********779******************************9999877889***************** PP NC ,,,,,,,,,,,,,,,<<<<<<<___._____>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 UgauuauauaaAGaGguuguuguaa.aaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UA +U A+GAG:::::::UA+ A U::::::: AA+ + :GGUGG ACC:CG:: U+ ::CG:CC: + fig|637909.5.peg.1466 875 CAUGUACUUCAUGAGAACAGUCUAGgCGACUGGCUGUUgAAUcAGAGGUGGAACCACGUU--UUU-AACGUCCUUGCA 949 8899999***************988789999*******9999******************..888.************ PP >> fig|764298.3.peg.1278 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus macacae NCTC 11558] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.2e-18 70.9 0.0 cm 1 224 [] 723 953 + .. 0.93 no 0.43 v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGA 88 A AAA CA UGA :G::AAA AU:::: U C+U :: ACAGAGA::::G G G+UGA+A+C:::: ::++A ::::AUGA fig|764298.3.peg.1278 723 AGUAAAUCAGUGAGAGAAAAA----AUCUGAGU-CAUCAAAGACAGAGAGUAUG--GAGGCUGAAAACAUACAUUAGA-CUCAGAUGA 802 ******************775....99999988.777888889**********9..677*************988888.8899999*9 PP v NC ------>>>>--->>,,<<<<<<<____........_________>>>>>>>,<<<____.__>>>,,,,..........,,,,,,,, CS T-box 89 AaauugCCccgGAGcaucuuucccGAAg........uuaauAgUAgggaaagaCGguuuc.gccCGUUAu..........Ugauuaua 157 + ::C: GAG C:::: C AA+ + AA+AGUAG ::::GACG UU +C CGUUA U+ ++A + fig|764298.3.peg.1278 803 --CACCUUCUUGAGU-GCAGAUGCCAAAuuuugauaAAAAAAGUAGUGUCUGACGGUUGAuUCUCGUUACgaaucggaguUUCAAACU 887 ..5566********8.9**********889****************************998999****************99****** PP v v NC ,,,,,,,<<<<<<<___._____>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 158 uaaAGaGguuguuguaa.aaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +GAG ::::::U + A +:::::: AAA A:GGUGG ACC:CG U+ CG:CC:U + fig|764298.3.peg.1278 888 CCCUGAGGGCAGUCUUGgCGACAGGCUGCUAAAuGAAGGUGGAACCACGUC--UUG-AGCGUCCUUGCA 953 ************99877689999*******87779**************97..777.79********** PP >> fig|904293.3.peg.1029 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus downei F0415] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.5e-18 71.5 0.0 cm 1 224 [] 571 787 + .. 0.90 no 0.51 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AU AAA:C+A GA+:G::AAA ::: :A+C + CAGAGA::C:: GU G+UGA+A +::G::A + ++U: :::G fig|904293.3.peg.1029 571 AUUAAAGCGAAGAUAGAAAAA----GGCAGAACCAAGC---AGCAGAGAGUCCC--GUGGCUGAAAgAGGGACA--ACGGUUUAGCCG 647 ******************776....7777777755555...469*****99987..588*******76888992..333567778888 PP NC ------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,, CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaG 164 ++::C: GAG: C:: : CGAA UAA AGUAG : ::GACGG+U ++CCGUUA+ AU A +U A+GAG fig|904293.3.peg.1029 648 ---CACAUUCUUGAGU-GCAGGUGCGAA-GUAACAGUAGUGUCUGACGGGUGGUUCCGUUAAuggcugggaguCAAUGACUUCAUGAG 730 ...6666*********.9**********.99*****************************************98999999******** PP NC <<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 165 guuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 G:::::: +++ A U::::::CAAA :GGUGG ACC:CG:: U+ ::CG:CC: + fig|904293.3.peg.1029 731 GAAAGGUGGGUGACUGCCUUUCAAAuCGAGGUGGGACCGCGUU--UU--AACGCCCUUGCA 787 **********************8887****************6..33..7*********** PP >> fig|981540.3.peg.1376 Histidinol-phosphate aminotransferase (EC 2.6.1.9) [Streptococcus pasteurianus ATCC 43144] rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.5e-19 73.9 0.0 cm 1 224 [] 712 950 + .. 0.94 no 0.49 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>- CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauG 87 AUAAAAG:++UGA+:G::AA A:::: : +C + A: ACAGAGAG ::::GGU GGUGAGA :::: U :+A : ::::G fig|981540.3.peg.1376 712 AUAAAAGUGUUGAUAGAAAA----AGCCUGAGACAACAG---ACAGAGAGUGCUUGGU-GGUGAGAaAAGCGU-GCAAUCCUUGGGCG 790 ******************77....4******98666665...79*************9.*******9******.577778999***** PP v v NC ------->>>>--->>,,<<<<<<<____............._________>>>>>>>,<<<____..__>>>,,,,........... CS T-box 88 AAaauugCCccgGAGcaucuuucccGAAg.............uuaauAgUAgggaaagaCGguuuc..gccCGUUAu........... 149 A ++::C: GA:C C:U:: CGAA U A AGUAG ::A:GACG +U C CGUUA fig|981540.3.peg.1376 791 A--CACAUUCUUGAGC-GCGUGUGCGAACucagcugauagagCUGACAGUAGUGCACGACGGGUGGuuCCACGUUACggagcagaagu 875 *..8888*********.9**********779******************************9999877889***************** PP NC ,,,,,,,,,,,,,,,<<<<<<<___._____>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 150 UgauuauauaaAGaGguuguuguaa.aaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UA +U A+GAG:::::::UA+ A U::::::: AA+ + :GGUGG ACC:CG:: U+ ::CG:CC: + fig|981540.3.peg.1376 876 CAUGUACUUCAUGAGAACAGUCUAGgCGACUGGCUGUUgAAUcAGAGGUGGAACCACGUU--UUU-AACGUCCUUGCA 950 8899999***************988789999*******9999******************..888.************ PP >> fig|33945.4.peg.526 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 9.5e-27 117.4 0.0 T-box 1076 1301 + cm no 0.46 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 9.5e-27 117.4 0.0 cm 1 224 [] 1076 1301 + .. 0.89 no 0.46 vv vv v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...............UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +AA :CAAUGAA::G: A+AGUA::: + UU ::U +CAGAGA: C:::GGU+GGUGAGA:::G :A::+A :::GAA ++:C:: GAG: :U:::::GAA ++UAGUA:::::A: CGG+ CGCCCGUUA + U+ A+A G U:G :G + A +C: C:A AAA+A:GGUGG ACC:CG:: A U::CG:CC:UU EMBOSS_001 1076 CAAACGACAAUGAAAAGA-AGAGUAGCAGUUCA--UUUGUUCUCAGAGAGUCUCUGGUAGGUGAGAAGAGGCAGCAAU-GUUUUGUGAACCACAUCUUUGAGUCGAUCAGUUGAA---UUUAGUAGGCUGAUCCGGGAGCGCCCGUUACagcagaggucagauuGACCAGUUGAGAUCGUUCGUUG---UGAGACGGCGAUgAAAAAAGGUGGAACCACGUG---A-UUACGUCCUUUAG 1301 ******************.********998777..******************************************9.55699*******************************...999**************************************966433333333333333355555555...7888888888888999****************7...4.47*********** PP >> fig|169963.11.peg.1783 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.7e-31 135.0 0.0 T-box 1203 1443 + cm no 0.43 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.7e-31 135.0 0.0 cm 1 224 [] 1203 1443 + .. 0.96 no 0.43 v vv vv v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<____..._________>>>>>>>,<<<____.__>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAAg...uuaauAgUAgggaaagaCGguuuc.gccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 UAAAAGC++ GAA :G:A AAGUA:: :A+ UU UUU AGAGAG:C:::GGUUGGUG+GA:::G:UAAA A + : ::GAA ++:C: GGAGC+ :UU::C:GAAG + + AGUA:G::AA: CGG+UU GCCCGUUAU + +A ++A AGAGG UG:U: + A :A:CA CAAA U::GGUGG ACC:CG GAAUA UC CG:CC::UU fig169963.11.peg.1783 1203 GUAAAAGCGUCGAACAGAACAAGUAGAGCGUAA--UUCUUUAGAAGAGAGUCCUUGGUUGGUGUGAAAGGAUAAAGAUaGCGUUAUCGAA-CACAUCUCGGAGCUGGUUUGCUGAAGcauAAGUGAGUAGGUGAACUCGGGUUAaGCCCGUUAUagcuuguuaguCUCGAACUAACAGAGGUUGAUACUGCGAAGUAUCAGCAAAuUGAGGUGGAACCACGUGAAUAUuauUCUCGUCCUCUUG 1443 ***************************999998..*************************************9999998888899*****.*************************888999999******************99********************8999999******************************8877*****************95555569************* PP >> fig|386043.9.peg.1767 [L=3642] Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2e-29 127.8 0.0 cm 1 224 [] 1201 1443 + .. 0.93 no 0.44 vvv vvv v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>.>>-------->>>>.--->>,,<<<<<<<____..._________>>>>>>>,<<<____.__>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaauguga.auGAAaauugCCcc.gGAGcaucuuucccGAAg...uuaauAgUAgggaaagaCGguuuc.gccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 UAA GC+AUGAA::G:A AAGUA:: +U UUUU+ AGAGAG:C:::GGUUGGUG GA:::G:UAAA A+A+ ::GAA ++:C:: GAGC+ :UU::C:GAA+ + AGUA:G::AA: CGG+ U GCCCGUUAU + +A ++A GAG ::G U: + A :A C:: AAA U::GGUGG ACC:CG GAAUA UC CG:CC::UU 386043 1201 GUAAUGGCGAUGAACAGAACAAGUAGAGCGUG-AUUCUUUUUUAAGAGAGUCCUUGGUUGGUGCGAAAGGAUAAAGAGAACGUUaUCGAA-CACAUCUGaAGAGCUGGUUUGCUGAAAcauAAGCGAGUAAGUGAACUCGGGAUAaGCCCGUUAUagcuuguuaguCUCGAACUAACGGAGGCUGGUACUGCGAAGUAUCGGUAAAuUGAGGUGGAACCACGUGAAUAUuauUCUCGUCCUCUUG 1443 **************************965554.5799999999*********************************9955555349****.**************************878999999****************9999*******************988889999999999***********************8777*****************95555569************* PP >> fig|683837.3.peg.1704 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 7.6e-31 133.3 0.0 T-box 1204 1444 + cm no 0.42 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7.6e-31 133.3 0.0 cm 1 224 [] 1204 1444 + .. 0.94 no 0.42 v vv vv v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<___._.._________>>>>>>>,<<<____.__>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAA.g..uuaauAgUAgggaaagaCGguuuc.gccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 U AAAGC++UGAA :G:A AAGUA:: : + +U UUU A AGAGAG:C:::GGUUGGUG GA:::G:UAAA A + : ::GAA ++:C: GGAGC+ :UUU:C:GAA UU ++AGUA:G:AAA: CGG+ + GCCCGUUAU +A +A ++A GAG :U: U: + A :A :A: AAA U::GGUGG ACC:CG GAAUAA UC CG:CC::UU 683837_original 1204 GUGAAAGCGUUGAACAGAACAAGUAGAGCGUGA-UUCUUUUCAAAGAGAGUCCUUGGUUGGUGCGAAAGGAUAAAGAUaGCGUUAUCGAA-CACAUCUAGGAGCUGGUUUGCUGAAc-aaUUGUAAGUAGGUAAACUCGGGAAAaGCCCGUUAUcgcuuguuaguCUAGAACUAACGGAGGCUAGUACUGCGAAGUAUUAGUAAAuUGAGGUGGAACCACGUGAAUAAuauUCUCGUCCUCUUG 1444 **************************9766555.8999999**********************************99955555569****.*************************6.46**********************9999******************988888899999999***********************8777******************7777789************* PP >> fig|1002366.3.peg.59 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1e-30 132.8 0.0 T-box 1204 1444 + cm no 0.43 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1e-30 132.8 0.0 cm 1 224 [] 1204 1444 + .. 0.96 no 0.43 v vv vv v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<____..._________>>>>>>>,<<<____.__>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAAg...uuaauAgUAgggaaagaCGguuuc.gccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 UAAAAGC+AUGAA :G:A AAGUA:: : + UU UUUU+ AGAGAG:C:::GGUUGGUG+GA:::G:UAAA A + : ::GAA ++:C: GGAGC+ :UU::C:GAAG + + AGUA:G::AA: CGG+ + GCCCGUUAU + +A ++A +GAG :UG U ++ A A CA: AAA U::GGUGG ACC:CG GAAUA UC CG:CC::UU fig|1002366.3.peg.59 1204 GUAAAAGCGAUGAACAGAACAAGUAGAGCGUCA--UUCUUUUUAAGAGAGUCCUUGGUUGGUGUGAAAGGAUAAAGAUaGCGUUAUCGAA-CACAUCUCGGAGCUGGUUUACUGAAGcauAAGUGAGUAGGUGAACUCGGGAAAaGCCCGUUAUagcuuguuaguCUCGAACUAACUGAGGCUGGUGCUGUGAAGUAUCAGUAAAuUGAGGUGGAACCACGUGAAUAGuauUCUCGUCCUCUUG 1444 **************************9777776..*************************************9999998888899*****.*************************888999999*****************9999*******************8999999******************************8777*****************95555669************* PP >> fig|1638.4.peg.1772[L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.8e-31 135.0 0.3 T-box 1207 1446 + cm no 0.41 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.8e-31 135.0 0.3 cm 1 224 [] 1207 1446 + .. 0.93 no 0.41 vv vv v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<____.._________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAAg..uuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 UAAAAGC++UGAA::G:A AAGUA:: : + +U UUU A AGAGAG:C:::GGUUGGUG GA:::G:UAAA A + : ::GAA ++:C::GGAGC+ UU::C:GAA+ U A++AGUA:G::AA CGG+ + GCCCGUUAU +A A ++A GAG :U U: ++ A :A A: AAA U::GGUGG ACC:CG GAAUA UC CG:CC::UU 163841772 1207 GUAAAAGCGUUGAAUAGAAUAAGUAGAGCGUGA-UUCUUUUAAAAGAGAGUCCUUGGUUGGUGCGAAAGGAUAAAGAUaGCGUUAUCGAA-CACAUCUAGGAGCUGGUUUGCUGAAAagUCAUAAGUAGGUGAAUUCGGGAAAGCCCGUUAUagcuuguuaguCUAGCACUAACGGAGGCUGGUACUGUGAAGUAUUAGUAAAuUGAGGUGGAACCACGUGAAUAUuauUCUCGUCCUCUUG 1446 **************************9766655.788889999********************************99955555679****.*************************667******************************************9978888888999999***********************7777*****************95555569************* PP Query: fig|525367.9.peg.2441 [L=2642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 8.4e-31 132.5 0.3 T-box 697 941 + cm no 0.42 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.4e-31 132.5 0.3 cm 1 224 [] 697 941 + .. 0.97 no 0.42 v v NC ::::::<<------<<<<-------<<<<<<---..----<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauc..cuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 UAAA+G:+A GAA::G: A AGUAA :A: + :UUUA AGAGAGC::::G+UUG+UG GA::::GUAA: + A :U: UGAA ++:C::GGA:CA UUU:::GAAG A +AGUA:::AAA CGG+ GCCCGUUA+ U+AU A + +GAG UUG:U:U ++ A +:A:CAA AAA U::GGUGG ACC:CG GAAU A UC CG:CC::U + fig_525367.9.peg.2441 697 GUAAAUGUGAAGAACAGA-AUAGUAAUUUAAGGUuuAGCCGUUUAUAGAGAGCUCUUGAUUGCUGGGAAAGAGUAACGGCACUUAGGUGAA-CACAUCUGGGAGCAGGUUUAUUGAAGGAAGAAGUAGGUAAAUUCGGGACGGCCCGUUAAagccggacagucaauuUUAUGACUGGUUGAGGUUGAUAUUGUGAGAUAUCAAUAAAacUGAGGUGGAACCACGUGAAUGAuauUCCCGUCCUCUGA 941 ******************.************998667889***************************************************.***************************************************************************9999999******************************66668******************5555567************* PP >> fig|226185.1.peg.734 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.8e-30 131.1 0.0 T-box 813 1045 + cm no 0.41 T-box leader (2) ! 1.9e-23 104.6 0.1 T-box 1201 1443 + cm no 0.37 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.8e-30 131.1 0.0 cm 1 224 [] 813 1045 + .. 0.96 no 0.41 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_....____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGaga....AuaA...UcuCGuCCcuUuu 224 + AAAA:CA GAA::G: A+AGUA :U::: + U U: U AGAGA::C:::GGUUGGUG +A:::G:: :A+A+ +:::A: GAA ++:C::GGAG:+ ::UU:::GAA +UAGUA:::AA:: CG + C C CGUUA+ U +A +U A+ AG UU::UGU + A +CA::AA AAA UA:GGUGG ACC:CGA A UCG:CC:UU 226185 813 UGAAAAACAGAGAACAGA-AGAGUAACUGUUUC--CUUUAGUGAAGAGAGUCUUUGGUUGGUGGAAAAAGACGUAAAG-AAACAGCGAACCACAUCUGGGAGUUGACUUUUUGAA-CCCUUAGUAGGAAAGUCCGGGACCACUCGUUAAcaggcgaaguUAUGAACUUCAUAAGGUUCGUGUUGCGAAACACGAAUAAAcUAAGGUGGAACCACGAUAauug----auuAUUCGUCCUUUGG 1045 ******************.*************9..88888899*****************************888887.9***********************************.9999***************************************99999********************************9998****************995444....45559*********** PP >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (2) ! 1.9e-23 104.6 0.1 cm 1 224 [] 1201 1443 + .. 0.94 no 0.37 vvv vvv NC ::::::<<------<<<<.-------<<<<<<-------<<<--------<<<<<<____._______.>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____..__>>>,,,,................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGG.AAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUu.GgUGaGA.gccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc..gccCGUUAu................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +UA AA:CAA G +::GG A AGUAA A: U CUU ::UUACAGAGA ::::: +UU G+UGA+A ::::: A:: A U:U U A ++CC:: AG:+ :UUU:C:GAA ++UAGUA:G:AAA: CG U +C ++ CGUUA+ +A ++ A+ AG :U::U:U ++ A +:A::A: AAA U::GGUGG ACC:CGA:+ A :UCG:CC::UU 226185 1201 UUACAAUCAAGGCUUAGGaCAUAGUAAUUUAGCU-CUUCCUUUACAGAGACUUUUUCAUUgGCUGAAAgAAAAAGAUGGAU-UCUUCUUUACUCACACCUAAAAGAUGUUUUUCUGAAUCCUUUAGUAAGAAAAACCGGUGACucUAUCGUUAAcagagaguaguugucaACGCAACUACAUAAGGCUUAUCUUGUGAAAGAUAAGUAAAuUGAGGUGGCACCACGAAUGCGA-UUCGUCCUCUUG 1443 ******************7799*******99998.9999***********88888888888*******7777788888877.777777878778888*******************************************9999999***********************889999999999*************************7777*****************98888.************ PP >> fig|333849.6.peg.2273 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.2e-29 128.6 0.0 T-box 1111 1456 + cm no 0.45 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.2e-29 128.6 0.0 cm 1 224 [] 1111 1456 + .. 0.99 no 0.45 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..................................................................................................................................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..................................................................................................................................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 +AA :CA+ GAA::G: A+AGUA:: :::A ::UU+ AGAGA: C:::GGUUGGUG +A:::G :A::++ U::: ::GAAA ++:C::GGAG: :UUU:C:GAAG +AUAGUA:G:AAA: CGG+ + GCCCGUUA A A + +++GAG UU:UU: + AA :AA:AA AAA +::GGUGG ACC:CG:: UAA ::CG:CC::UU 333849.6.peg.2273 1111 CAAAUGACAUCGAAAAGA-AGAGUAGCCGUUA---GGUGUUUUUAGAGAGUCUCUGGUUGGUGGAAAGAGGCAGCAGU-UAACCGUGAAACACAUCUUGGAGUCGAUUUUCUGAAGCGUAUAGUAGGAAAAUCCGGGGA-GCCCGUUACagcugcggucguugcuagaugaccagauaaggcuggcuuuuccgugaggagucgguaaaaaaagguggaaccacgugauuaacguccuuugaucuucggaucaaaggacuuuuuguuuucaucugaacggCAACGACUGUGUGAGGUUUUUUCUGCAAGGAAAAAAUAAAcAGAGGUGGAACCACGUA--UAA-UACGUCCUCUUG 1456 ******************.************9...688*************************************999.99**********************************************************.*******************************************************************************************************************************************999999*******************************9998****************9..9**.9*********** PP >> fig|333849.6.peg.3253 [L=4191] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.6e-28 123.7 1.3 T-box 1089 1362 + cm no 0.37 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.6e-28 123.7 1.3 cm 1 224 [] 1089 1362 + .. 0.95 no 0.37 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____....................................._________>>>>>>>,<<<______>>>,,,,.............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_____.._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg.....................................uuaauAgUAgggaaagaCGguuucgccCGUUAu.............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaA..UcuCGuCCcuUuu 224 +AA :CAAUGA+::G A AGUA: U:A + UU :UUU AGAGAG::::CG UUG+UG +AG::::UAA: AA+ U:A :GAA +G C:: AG:+ :UUU:C:GAA+ + A+ AGUA:G:AAA: CGGU + G+CCGUUAU + +A ++A AGAGGUU:UU: ++ A :AA:AACAAA U::GGUGG ACC:CG GAA+AA UC CG:CC::UU EMBOSS_001 1089 GAAAGGACAAUGAUCAGA-AUAGUAGGUGAAUCGAUUUGUUU-UAGAGAGUUUCCGUUUGCUGCAAGGAAAUAACGAAUCAUCAUCGAA-CACGCCUGUAAGUUGUUUUUCUGAAAuaagaaguuuaguuuagcgaaguuugauucguuuucuAGAUGAGUAGGAAAAAUCGGUGA-GUCCGUUAUcacuccuuaguuuAUCGAACUAACAGAGGUUUUUACUGUGAAGUAAAAACAAAucUGAGGUGGGACCACGUGAAAAAuuUCUCGUCCUCUUG 1362 *****************9.**************999999887.8*********************************************.*************************87899999999999999999999999999999999998888889999************99.**********************99999********************************8877******************9777789************* PP >> fig|1158612.4.peg.1419 [L=4185] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 5.2e-27 118.6 6.7 T-box 1094 1367 + cm no 0.34 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.2e-27 118.6 6.7 cm 1 224 [] 1094 1367 + .. 0.96 no 0.34 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____....................................._________>>>>>>>,<<<______>>>,,,,.............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_____.._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg.....................................uuaauAgUAgggaaagaCGguuucgccCGUUAu.............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaA..UcuCGuCCcuUuu 224 +AA A:C+AUGA+::: A AGUA: U:A + UU :UUU AGAGAG::::CG UUG+UGA+AG::::UAA: AA+ U:A :GAA +G ::: AG:+ :UUU:C:GAA+ + A+ AGUA:G:AAA: CGG+ + G+CCGUUAU + U+A ++A AGAGG U:UU: +A A :AA:A CAAA U::GGUGG ACC:CG GAAUAA UC CG:CC::UU fig|1158612.4.peg.1419 1094 GAAAGAACGAUGAUCAAA-AUAGUAGGUGAAUCAAUUCAUUU-UAGAGAGUUUCCGUUUGCUGAAAGGAAAUAAUGAAUCAUCAUCGAA-CACGCUUGUAAGUUAUUUUUCUGAAAuaaaaaauuuaguuucuugaaguuagcuucguauucuAAAUGAGUAGGAAAAAUCGGAGA-GUCCGUUAUcacuccuuaguuuAUCUAACUAACAGAGGUUUUUACUGAGAAGUAAAAGCAAAucUGAGGUGGGACCACGUGAAUAAauUCUCGUCCUCUUG 1367 *****************9.**************999999987.8*********************************************.*************************87999999999999999999999999999999999999899999999*************9.**********************99999********************************8877*******************888889************* PP >> fig|1158608.4.peg.47 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 4e-32 138.2 2.9 T-box 883 1112 + cm no 0.36 T-box leader (2) ! 1.7e-24 108.7 0.1 T-box 1190 1434 + cm no 0.37 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4e-32 138.2 2.9 cm 1 224 [] 883 1112 + .. 0.97 no 0.36 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAAA:CAA GAA::G: A+AGUA :U::: U UU U UU AGAGA::C:::GG UGGUG++A:::G::A A+A+ +:::A: GAA ++:C::GGAG:+ ::UU:::GAA + A+UAGUA:::AA:: CGG+ ++GCCCGUUAU +AU A +U A+GAG UU:U:GU ++ A C:A:AA AAA +A:GGUGG ACC:CG : U+ : CG:CC:UU EMBOSS_001 883 UAAAAAACAAAGAACAGA-AGAGUACCUUUAUU--UUUUAUUGAAGAGAGUCUUUGGCUGGUGUAAAAAGACAAAAAG-AUAAAGCGAACCACAUCUGGGAGUUAACUUUUUGAACAGAUUAGUAGGAAAGUUCGGGCAUGCCCGUUAUagcauuagaaguCUAUGACUUCAUGAGGUUAUCGUUGUGAAGCGAUAAUAAAaAAAGGUGGAACCACGAA--UUU-UACGUCCUUUGG 1112 ******************.*************9..88888999*****************************988887.9*********************************************************************************999999*******************************7777***************99..888.9*********** PP >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (2) ! 1.7e-24 108.7 0.1 cm 1 224 [] 1190 1434 + .. 0.93 no 0.37 v v v v v v v v NC ::::::<<------<<<<-------<<<<<<---.----<<<--------<<<<<<____._______.>>>>>>.>>>----->>>>>>-------->>>>.--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,......................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauc.cuuauuuUacAGAGAgccggcGgUu.GgUGaGA.gccggu.aaauaaaugugaauGAAaauugCCcc.gGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu......................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AAAA: AU+AA::G:A AAGUAAU:: : +C UU :: ACAGAGA ::::: +UU G+UGAGA ::::: ::+AA : ::AUGAA ++:C:: :+ :U:U:C:GAA + +AGUA:G:A:A: CGG U+ +CCGUUAU A+ AU+ +A+GAGG U::U: ++ A :A::A CAAA U::GGUGG ACC:CGA U UCG:CC::UU EMBOSS_001 1190 CCAAAACGUAUAAACAGAACAAGUAAUCACAGACcAUUUCCUGACAGAGACUUUUUUAUUgGCUGAGAaAAAAAGcUGGAAACCUUUGAUGAA-CACAUCUGuUUCAGUCAUCUUCUGAA---UCAAGUAAGAAGAUGCGGCAUUCUCCGUUAUcagaaaagaaucuuuagcuuacAAAAGAUUCUAUGAGGUUAAUACUGUGAGGUAUUAGCAAAuUGAGGUGGAACCACGAU--UCU-UUCGUCCUCUUG 1434 *****************************998885666666778******88888888888*******777777765566668999*******.********6666789***********...999**************************************************999**********************************8877****************7..777.7*********** PP >> fig|1158612.4.peg.1172 [L=3645] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.2e-31 135.3 3.3 T-box 796 1024 + cm no 0.36 T-box leader (2) ! 1.3e-23 105.3 0.1 T-box 1200 1446 + cm no 0.37 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.2e-31 135.3 3.3 cm 1 224 [] 796 1024 + .. 0.96 no 0.36 v vv vv v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAAA:CAA GAA::G: A+AGUA :U::: U UU UU AGAGA::C:::GGUUGGUGA+A:::G::A ++A +:::A: GAA ++:C::GGAG:+ ::UU:::GAA +AGUA:::AA:: CGG+U++GCCCGUUA +AU A +U A+GAG UU:U:GU ++ A C:A:AA AAA +A:GGUGG ACC:CG : U+ : CG:CC:UU 115861241172 796 UAAAAAACAAAGAACAGA-AGAGUACCUUUAUU-AUUUCAUUCAAGAGAGUCUUUGGUUGGUGAAAAAAGACAGAAGA-AUAAAGCGAACCACAUCUGGGAGUUAACUUUUUGAA--ACGAAGUAGGAAAGUUCGGGUAUGCCCGUUACagcaauagaaguCUAUGACUUCAUGAGGUUAUCGUUGUGAAGCGAUAAUAAAaAAAGGUGGAACCACGAA--UUU-UACGUCCUUUAG 1024 ******************.************99.444445888*****************************987777.9***********************************..7889****************************************999999*******************************7777***************99..888.9*********** PP >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (2) ! 1.3e-23 105.3 0.1 cm 1 224 [] 1200 1446 + .. 0.91 no 0.37 v v v v v v NC ::::::<<-----.-<<<<-------<<<<<<---.----<<<--------<<<<<<____._______.>>>>>>.>>>----->>>>>>-------->>>>..--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.......................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgA.aggGGAAaAGUAauucacauc.cuuauuuUacAGAGAgccggcGgUu.GgUGaGA.gccggu.aaauaaaugugaauGAAaauugCCcc..gGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.......................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 AU AA :C++ A +::G:A AAGUAAU::::A+C UU :: ACAGAGA ::::: +UU G+UGAGA ::::: ::+AA ::::AUGAA ++:C:: AG: :U U:C:GAA + +AGUA:G:A A: CGG UU+ +CCGUUAU U A+ AU+ +A+GAGGUU::U:U ++ A :A::AACAAA U::GGUGG ACC:CGA U UCG:CC::UU 115861241172 1200 AUCAACACGUAUAcUCAGAACAAGUAAUCAUAAACuAUUUCCUGACAGAGACUUUUUUAUUcGCUGAGAgAAAAAGcUGGAAACCUGUGAUGAA-CACAUCUGuuUCAGU-CAUCUUCUGAA---UCAAGUAAGAAAAUGCGGCUUUCUCCGUUAUcggaaaugaaucuuuaguauuguUAAAGAUUCUAUGAGGUUACUAUCGUGAGGUAGUAACAAAuUGAGGUGGAACCACGAU--UCU-UUCGUCCUCUUG 1446 ********76655277888**************996666666778******88888888888*******877777775666668**********.8888787757778*9.9**********...999***************************************************9************************************8877****************7..777.7*********** PP >> fig|321967.11.peg.1415 [L=4149] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.4e-27 120.8 0.0 T-box 1120 1374 + cm no 0.47 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.4e-27 120.8 0.0 cm 1 224 [] 1120 1374 + .. 0.97 no 0.47 vv vv v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>----.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,....................................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu....................................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + AAG: UGA+::G:A AAGUAA:::++ + U :U: ACAGAGA:C:::: U G+UGA+A::::G::A:UA+ :::UGAA ++:C:: GA:C+U::: :C:GAA ++AGUA:G: :::ACG:+U C ++:CGUUAU U UU + ++GAGGUU::: U + AA + :::AACAAA U::GGUGGUACC:CG:: A+AA ::CG:CC:: + 321967.11.peg.1415 1120 CAUGAAGUUGUGAUUAGAACAAGUAAGCUGAUC--CUGAUCAACAGAGAGCGUCUAUU-GCUGAAAAGACGCGAUUAGCC--AGCUGAACaCACAUCUAUGAACUUGACGGCUGAA---CUAAGUAAGCUGUCACGCAUCCgUUGCGUUAUcacugcugccaacugcuguucgcaauugcugacaguUACUUGGCAGGUGAGGUUUAGGUCGCAAGAGCUAAACAAAauUGAGGUGGUACCGCGGUCAAAA-AUCGCCCUCGGA 1374 ******************************988..999*****************877.******************977..*******98999**********************...899*******************99********************************************99***********************************55557*****************99999.************ PP >> fig|387344.15.peg.1185 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.9e-28 123.2 0.0 T-box 1091 1318 + cm no 0.46 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.9e-28 123.2 0.0 cm 1 224 [] 1091 1318 + .. 0.98 no 0.46 v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+AAA :CA UGAA::G: A+AGUA: A: U + :: +CAGA A:C::: GGUUG UG GA+:::G::: A+:U :GAAA ++:C:: GAG:+ :: :::GAA + +AGUA::: :: CGG+UU GCCCGUUAU U+ +A + +GAGGUUG:: A++ AU ::CAACAAA +::GGUGG ACC:CGA: + :UCG:CC::UU+ 387344.15.peg.1185 1091 AAAAAGACAGUGAACAGA-AGAGUAGUUGAAUU-AAGGGUCAUCAGAAAGCUUC-GGUUGAUGGGAAGAAGCGGUCUUAAUUUGGCGAAACACAUCUGUGAGUUGGCCGUUUGAA---UGAAGUAGAAUGGUCCGGGUUAGCCCGUUAUcgcuggaguugcUUGCAACUCGCUGAGGUUGACGCAGUGAUGUGUCAACAAAcAGAGGUGGAACCACGAU--GUG-AUCGUCCUCUUA 1318 ******************.************98.8999***************9.7788*******9*****9999999************************************...999****************************************999**********************************9998****************9..888.9*********** PP >> fig|525310.3.peg.2053 [L=3645] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 112.4 0.9 T-box 1114 1345 + cm no 0.38 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.9e-25 112.4 0.9 cm 1 224 [] 1114 1345 + .. 0.94 no 0.38 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu................UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAA :C AUGA+::G: A AGUAA: C:: + UUA::UU+CAGA AGC :::G+U G UG GA ::: GUA::U+A +::G+:UG ++:C::GGAG: :UUUCC:GAA + +AGUA:GGAAA: CG U + GC CGUUAU U ++A + +GAG::U:U::+ A+ A U::A:A:: AA U::GGUGG ACCGCGA:+A++A :UCGUCC::UU+ 525310.3.peg.2053 1114 UAAAAGACUAUGAUCAGA-AUAGUAAA-CCAUA--UUAAAUUUCAGAAAGCUCAUGAU-GAUGGGAaAUGGGUAUUUGA-AUGGUUUGCGUCACAUCUGGGAGUCAUUUUCCUGAA---UGAAGUAGGGAAAAGCGGUGA-GCACGUUAUugcugaaguuuaguuuUCUAAACUCGUUGAGACUUUUCAUAUGAAUGGAAAGUgAAGcUGAGGUGGAACCGCGAUUAAUA-AUCGUCCUCUUA 1345 ******************.99999765.55555..899*****************999.99999999***********8.55666889999*************************...999**************9999.99**********************99999999999***************************87779*****************99999.************ PP >> fig|525310.3.peg.2770 [L=4158] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.9e-21 97.2 0.0 T-box 1110 1372 + cm no 0.44 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.9e-21 97.2 0.0 cm 1 224 [] 1110 1372 + .. 0.95 no 0.44 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>----.---->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<____.__>>>,,,,............................................,,,,,,,,,,,,,,,<<<.<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAa.auugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuuc.gccCGUUAu............................................UgauuauauaaAGaGguu.guuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A+ AAAG: +UGA+::G:A AAGUAA ::: + U A U:UA AGAGA:: :: G UG+UGAGA+:: :::A U ::: UGAAA ++:C:: GA:C+ UU::::GAA A AGUA::::AA CG:+ + ++:CGUUAU UG U A+ ++ AGG:: :U:U ++ A :A: ::CAAA U: GGUGG ACCGCGA +A+AA UCGUCC : 525310.3.peg.2770 1110 AAUAAAGUUUUGAUUAGAAGAAGUAAUCGGCUC--UGAGUGUAAAGAGAGUUCC--GCUGCUGAGAAGGGACCAUUCC-GACCGGUGAAAaCACAUCUAUGAACUAGUUGAUUGAA---CAGAGUAGAUCAAUUCGCAAGUuUAGCGUUAUcaggguuaccgcaacuguuaucgggcauuugucugcugaguaguUGUUGGCAACGUAAGGCAaUCUAUCGUGAGGUAGGUGCAAAuUGGGGUGGAACCGCGAUUAAAA-UUCGUCCUCGAG 1372 *****************************9887..*******************..899*****************99.6689*****998999**********************...899*****************9999**************************************************99888888888888888885488888889999999999997777*****************99999.************ PP >> fig|1158609.4.peg.3119 [L=3687] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.3e-33 143.0 1.2 T-box 855 1085 + cm no 0.38 T-box leader (2) ! 2.9e-24 107.8 0.7 T-box 1233 1478 + cm no 0.36 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.3e-33 143.0 1.2 cm 1 224 [] 855 1085 + .. 0.98 no 0.38 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAAA:CAA GA ::G: A+AGUA :U::: U +U+ U:U A AGAGA::C:::GGUUGGUGAGA:::G::A:A+A+ +:::A: GAA ++:C::GGAG:+ ::UU:::GAA+ ++ AGUA:::AA:: CGG+U++GCCCGUUAU +AU A +U A+GAG UU:U:GU ++ A C:A:AA AAA +A:GGUGG ACC:CG : U+ : CG:CC:UU 1158609.4.peg.3119 855 UAAAAAACAAAGAGCAGA-AGAGUACCUUUAUU-UUAUUCUCAAAGAGAGUCUUUGGUUGGUGAGAAAAGACAGAAAG-AUAAAGCGAACCACAUCUGGGAGUUAACUUUUUGAAAGGUUCAGUAGGAAAGUUCGGGUAUGCCCGUUAUagcauuggaaguCUAUGACUUCAUGAGGUUAUCGUUGUGAGGCGAUAAUAAAaAAAGGUGGAACCACGAA--UUU-UACGUCCUUUGG 1085 ******************.***********998.8999*************************************999.99********************************************************************************999999*******************************7777***************99..888.9*********** PP >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (2) ! 2.9e-24 107.8 0.7 cm 1 224 [] 1233 1478 + .. 0.94 no 0.36 v v v v v v v v v v NC ::::::<<------<<<<-------<<<<<<---.----<<<--------<<<<<<____._______.>>>>>>.>>>----->>>>>>-------->>>>.--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,.......................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauc.cuuauuuUacAGAGAgccggcGgUu.GgUGaGA.gccggu.aaauaaaugugaauGAAaauugCCcc.gGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu.......................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A AAAA: AUGA+: G:A AAGUAAU:: : +C CUU :: ACAGAGA ::::: +UU G+UGAGA ::::: ::+AA : ::AUGAA ++:C : :+ :U:U C:GAA AA+AGUA:G A:A: CGG U+ +CCGUUAU U A++AU+ A+GAGGUU:UU:U + A :AA:AACAAA U::GGUGG ACC:CGA UA UCG:CC::UU 1158609.4.peg.3119 1233 ACAAAACACAUGAUCGGAACAAGUAAUCACAGACaCUUUCCUGACAGAGACUUUUUUAUUcGCUGAGAaAAAAAGcUGGAAACCUUUGAUGAA-CACAUCUGaUUCAGUCAUCUUCUGAA---AAAAGUAAGUAGAUGCGGCAUUCACCGUUAUcagaaaagaaucuuuaguuauacUAAAAAUUCCAUGAGGUUAUUAUCGCGAGGUAAUAACAAAuUGAGGUGGAACCACGAU--UAU-UUCGUCCUCUUG 1478 *****************************998887888888889******88888888888*******77777776666666899********.********8888899***********...99*****************************************************************************************8877****************7..777.7*********** PP >> fig|1158609.4.peg.1181 [L=4191] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.1e-31 136.7 1.0 T-box 1130 1398 + cm no 0.36 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.1e-31 136.7 1.0 cm 1 224 [] 1130 1398 + .. 0.96 no 0.36 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____................................_________>>>>>>>,<<<______>>>,,,,.............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_.____.._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg................................uuaauAgUAgggaaagaCGguuucgccCGUUAu.............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGaga.AuaA..UcuCGuCCcuUuu 224 +AAA+:C+AUGA+::G A AGUA::U:A U UU :UUU AGAGAG::::CG UUG+UG++AG::::UAA:+AA+ U:A::GAA +G C:: GAG:+ :UUU:C:GAA +UA+ AGUA:G:AAA: CGG+ + G+CCGUUAU + ++A ++A AGAGGUU:UU: ++ A :AA:AACAAA U::GGUGG ACC:CG GA +A UC CG:CC::UU 1158609.4.peg.1181 1130 GAAAAUACGAUGAUCAGA-AUAGUAGAUGAAGUGAUUUGUUU-UAGAGAGUUUCCGUUUGCUGUAAGGAAAUAACAAAUCAUCAUCGAA-CACGCCUGUGAGUUGUUUUUCUGAACuaguaguagggaaucacaguauuucguuccuuAUAUCAGUAAGAAAAAUCGGAGA-GUCCGUUAUcacuccuuaguuuAUCAAACUAACAGAGGUUUUUACUGUGAAGUAAAAACAAAucUGAGGUGGGACCACGUGAa-AAUauUCUCGUCCUCUUG 1398 *****************9.**************888888887.8****************************9999999**********.*************************669****************************************************9.**********************99999********************************8877******************95.43348************* PP >> fig|220668.1.peg.1922 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 5.1e-26 114.6 0.0 T-box 1069 1299 + cm no 0.45 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.1e-26 114.6 0.0 cm 1 224 [] 1069 1299 + .. 0.97 no 0.45 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..............UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAAA:CA GAA::G: A+AGUA:UU:::A + UU: AG GA:: ::CG+U G UG GA G:: :::AA +A U:::AA:GAA ++:C:: GAG:+ ::::C:GAA +UAGUA:G:::: CG UU C CGUUA ++A + +GAG: U::U: ++ A :A::A : AA+ U::GGUGG ACCGCGA: UAA :UCGUCC::UU+ 220668.1.peg.1922 1069 UAAAAAACAGGGAACAGA-AGAGUAGUUGUAAG-GACCUUGCCGAGCGAGUUAUCGAU-GAUGGGAaGAUGACCAAGGA-UUACAACGAACCACAUCUGUGAGUUGGACAGCUGAA---GUUAGUAAGCUGUUUCGGUUGGCCUCGUUAGcggcggaguuuaguGAUAAACUCGUUGAGAUUAGUUGUGUGAGCAACUAGUgAAUaUGAGGUGGAACCGCGAU--UAA-AUCGUCCUCUUA 1299 ******************.*************9.999******************999.99999999**********99.9***********************************...889*****************************************9777888888999*************************99999*****************..999.************ PP >> fig|220668.1.peg.2122 [L=4152] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 3.7e-22 99.9 0.0 T-box 1094 1325 + cm no 0.45 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.7e-22 99.9 0.0 cm 1 224 [] 1094 1325 + .. 0.94 no 0.45 v v v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>----.---->>>>--->>,,<<<<<<<___._.._________>>>>>>>,<<<____.__>>>,,,,.........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGAAa.auugCCccgGAGcaucuuucccGAA.g..uuaauAgUAgggaaagaCGguuuc.gccCGUUAu.........UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AA G: UGA+::G:A AAGUA UU:A: + +U U: U CAGAGA: C:G: GU+G+UGAGA :C:G : :A A+ :U:AA GAA ++:C:: GA:C+ CU:::::GAA U + A+UA:::::AG CG:+UU ++:CGUUAU + + A+ A+GAG U:: :: + A :: ::A AAAUA:GGUGG ACC:CG UAA CG:CC:UUU+ 220668.1.peg.2122 1094 UAAACGGUUGUGAUUAGAACAAGUAAUUAAGUC-UUCCUCAUCCAGAGAGCCCGG-GUAGCUGAGAaCCGGACAGACAG-GCUUAACGAACaCACAUCUAUGAACUGCUAAGGUGAAc-caGUCUCAUUAGCCUUAGCCGAAUUGgUUUCGUUAUccaaguugaCUUGAUCAACAUGAGGUCUGCCGUGCGAACGGUAGAUgAAAUAAGGUGGAACCACGC--GUAA--ACGUCCUUUUA 1325 *******************************98.777788999***********8.788*******9999999888777.99********98999**********************5.5699*********************9999***************9778888999999*************************9999***************8..5666..8********** PP >> fig|762550.4.peg.652 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 7e-28 121.8 0.1 T-box 1094 1316 + cm no 0.39 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 7e-28 121.8 0.1 cm 1 224 [] 1094 1316 + .. 0.97 no 0.39 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAAA:C++UGA :: : A+AGUA:UU:A: +U :U:U+CAGAGAG:::GCGG U UG+GAGC:::U:A:UA :U:AA:GAAA ++: :: GAG: ::U::::GAA + +AGUA::::A:: CGG+UU+GCCCGUUA U+ U A +UA + AG :: ::: A++ AU ::: :: A+ +::GGUGG ACC:CG: A+AA :CG:CC::U + fig|762550.4.peg.652 1094 UAAAAAACGUUGAGCAGA-AGAGUAGUUUAAC---AUUUUCUUCAGAGAGUUUGCGGGUAAUGUGAGCAAAUGAUUAU-GUUAAAUGAAACACAUUUGCGAGU-GUGUGAUUGAA---UGAAGUAGAUCACAUCGGAUUUGCCCGUUACcgcauacagucUUUUGACUUAUUAAGGCAUAAUCAGUGAUGAUUGUGUGAUaAGAGGUGGCACCGCGU--AAAA--ACGCCCUCUGA 1316 ******************.***********98...678999********************************99999.789*********************.9**********...999***************************************9999999******************************8888***************9..5665..*********** PP >> fig|927691.3.peg.1272 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 3.5e-25 111.3 1.6 T-box 1095 1427 + cm no 0.39 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.5e-25 111.3 1.6 cm 1 224 [] 1095 1427 + .. 0.98 no 0.39 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,........................................................................................................................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu........................................................................................................................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 ++AAAA:C++UGA :: : A+AGUA:UU:A: +U :U:U+CAGAGA::::GCGG U UG+GAGC:::::A:UA :U:AA:GAAA ++: :: GAG: U::::GAA + +AGUA::::A CGG+ U+GCCCGUUA A+ A + A AGAG:: :UU: ++ A :AA: ::AAA U::GGUGGUA C:CG: U A :CG:CC::UU 927691.3.peg.1272 1095 UAAAAAACGUUGAGCAGA-AGAGUAGUUUAAC---AUUUUCUUCAGAGAGUUUGCGGGUAAUGUGAGCAAACGAUUAU-GUUAAAUGAAACACAUUUGCGAGU-GUGUGAUUGAA---UGAAGUAGAUCAUGUCGGAAUUGCCCGUUACcgcauacagucuuuugacuuaguaaggcauaaucagugaugauugugugauaagagguggcaccgcguaaaaacgccucugaauacaauuguauucagagggcguuuuuguguucacuauAAAAGACUGACAGAGUAGUUUUGUGUGAACAAAAUUAAAAucUGAGGUGGUAUCACGC---UGAC-GCGUCCUCUUG 1427 ******************.***********98...678999********************************99999.789*********************.99*********...999***************************************************************************************************************************************************9999999*******************************8777*****************...6775.*********** PP >> fig|1229281.3.peg.402 [L=3651] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 3.6e-25 111.3 0.0 T-box 1046 1274 + cm no 0.43 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 3.6e-25 111.3 0.0 cm 1 224 [] 1046 1274 + .. 0.97 no 0.43 NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,...........,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu...........UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 + :CAAUGA+::G: A+AGUA:U::AC U ++ U:: A AG GA C::G:G+ UGGUG +A :C::G ::A++ GU::A:GAA ++:C:: GAG:+ :U: CC:GAA + A++A UA:GG :A: CGGU + ++CCGUUAU + +A +U+ +GAG U: ::: + A ::: :A AAA U::GGUGG ACCGCGA UAAU UCGUCC::UU+ 1229281.3.peg.402 1046 UGUUUGACAAUGAUCAGA-AGAGUAGUCUACGU-UACUUCGAAAAGCGACCUAGGGAAUGGUGCAAgCCUAGGCGAAGC-CGUAGAUGAACCACAUCUGUGAGUUGAUAGCCUGAA-AAAUAACUAGGGUUAUCCGGUAA-UUCCGUUAUcauuuaaguuaAUGCAACUUUCUGAGGUUGACUGCGCGAGCAGUUGAUAAAuaUGAGGUGGAACCGCGA---UAAU-UCGUCCUCUUA 1274 ******************.*************9.888999***********************************9999.9***********************************.99999******************.99****************99889999999999*************************7777*****************...8997.*********** PP >> fig|1242253.3.peg.435 [L=3642] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.3e-20 93.6 0.0 T-box 760 1012 + cm no 0.40 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-20 93.6 0.0 cm 1 224 [] 760 1012 + .. 0.95 no 0.40 v v v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>.>>>----->>>>>>-------->>>>--->>,,<<<<<<<____................_________>>>>>>>,<<<____..__>>>,,,,.................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccggu.aaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg................uuaauAgUAgggaaagaCGguuuc..gccCGUUAu.................UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 A AAAA:C AUGA ::G AGUA:UU:::A :: ACAGAGA:::::CGG G+UG +A G::::: :: UA++U:::AA:GAA ++ C:: AG:+ : UU:C:GAA + AA+AGUA:G:AA : CGG+ + CCCGUUA + ++A + ++GAG U:G U: ++ A :A C:A AA U::GGUGG ACCGCGA AUA UCGUCC::UU+ 1242253.3.peg.435 760 ACAAAAACUAUGAGCAGA-CUAGUAGUUAUAAG----CACAGACAGAGAGUAUUCGGA-GCUGGAAaGAAUACaUGAUAGUUUAUAAUGAAUCACACCUGUCAGUUGAUUUUCUGAAUguagucgaguauauauACAAAAGUAAGAAAUUCCGGAAAAcgCCCCGUUAGcgcacgaguuuggucaaAUUAAACUCCGUGAGUUCGUUUGUGUGAGCAAGCGAUgAACaUGAGGUGGAACCGCGA--AUAG--UCGUCCUCUUA 1012 *****************9.************87....5666789***********999.9**99999******7777777*************************************779************************************999999************************9999999******************************88889***************9..5555..9********** PP >> fig|1496.1.peg.3034 [L=3804] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 4.7e-26 114.8 2.6 T-box 1113 1375 + cm no 0.37 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 4.7e-26 114.8 2.6 cm 1 224 [] 1113 1375 + .. 0.95 no 0.37 v vv vvv v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____.........._________>>>>>.>>,<<<____.....__>>>,,,,......................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<_.____.._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg..........uuaauAgUAgggaa.agaCGguuuc.....gccCGUUAu......................UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGaga.AuaA..UcuCGuCCcuUuu 224 +UAAA+GC A GAA::G:AA AGUAA::::: U+ +U U: ACAGAGA ::CG+UUGGUGAGAG:: :A A +U:::::UGAA ++:C:: GAGCA : ::C:GAA+ + ++UA+UA:G::A : CGG+ UC CCCGUUAU + UA +UAAAGAG UU: UGU ++ A CA :AA AA +::GGUGG ACC:CG GA U+A UC CG:CC::U 1496.1.peg.3034 1113 UUAAAUGCUAAGAAAAGAAAUAGUAAAAGUAGUUAAUCUUAAACAGAGAGUUUCCGAUUGGUGAGAGGAGCAAUAGAUUUUACUUUGAA-CACAUCUUUGAGCAGGA-CUCUGAAAgaguagaaauACUUUAUUAGGAGAuUUCCGGAAUCcuugcACCCGUUAUagugcuagaguauaauaauuuuAUUGUACUUAAAGAGGUUAGUGUCGUGAGGCAUUAAUgAACAGAGGUGGAACCACGAGAg-UUAacUCCCGUCCUCUAG 1375 *********************************8888888888*************************98776666779**********.*************9999.9999999779********999999999999988999*****999999999*****************************9999*********************************8888******************5.55559************* PP >> fig|350688.5.peg.2711 [L=3855] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.2e-27 121.0 0.0 T-box 1087 1349 + cm no 0.42 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.2e-27 121.0 0.0 cm 1 224 [] 1087 1349 + .. 0.94 no 0.42 vv v v vv vv vv v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________.>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<____....__>>>,,,,.............................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_..____._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGA.gccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuuc....gccCGUUAu.............................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGaga..AuaA.UcuCGuCCcuUuu 224 ++AAAAGC++UGA+G:G:AA AGUAA::::: ++ UU :UUUACAGAGAG: ::CGGUUGGUGAGA G:: :U : +A +:::::UGAA ++:C:C GAGC+ :::: CGAA UU UAGUAG+ :::: CGG+U+C CCCGUUAU + UA +U AAGAG UUG U: + A :A CAA AAA +: GGUGG ACC:CG GA AUAA UC CG:CC :U fig|350688.5.peg.2711 1087 UAAAAAGCGUUGAUGAGAAAUAGUAAAGAUAGAUAUUCUUUUACAGAGAGUACCCGGUUGGUGAGAgGGGCAU--UGGAaCAUAUCUUGAA-CACAUCUCUGAGCUAUGCAC-CGAAUccuuUUGGUAGUAGACUGCAUCGGAUACcugcACCCGUUAUagugcuagaguauaaauaagcaagggcuuAUCGUACUUGAAGAGUUUGGUACUGCGAAGUAUCAAUAAAaAGGGGUGGAACCACGUGAguAUAAcUCUCGUCCUCUAG 1349 ******************************************************************5555555..444446**********.*******************5.666655899***********************9999999************************************999**********************************7777*****************98766669************* PP >> fig|546269.5.peg.1386 [L=3783] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 1.1e-28 125.0 0.0 T-box 874 1122 + cm no 0.44 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.1e-28 125.0 0.0 cm 1 224 [] 874 1122 + .. 0.96 no 0.44 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____...._________>>>>>>>,<<<____....__>>>,,,,..............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,.,<<<<-------<<<<<_..____.._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg....uuaauAgUAgggaaagaCGguuuc....gccCGUUAu..............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa.uagGGUGGUACCgCGaga..AuaA..UcuCGuCCcuUuu 224 +AAAAGCA+ GA ::G:AA AGUA UUC: U + U:UUACAGAGA::::::GGUUGGUGA+A::::::A:A AA++ :GAA GAA ++:C:: GAGC U U::::GAAG UU A UA::::A CGG+ C CCCGUUAU + UA + +GAG :UG:U:U + AA :A:CA: AAA +A:GGUGG ACC:CG GA A A UC CG:CC:UUU 546269.5.peg.1386 874 GAAAAAGCAUAGAGAAGAAAUAGUACUUCUGUUGUCCCUCUUACAGAGAGUGUAUGGUUGGUGAAAAUACACAGAGAAGAUAGAAAGAA-CACAUCUUUGAGC-UGAUCGGUGAAGcauuUUGCCACUAGCCGACUCCGGAACCucgcACCCGUUAUcgugcaagaguaugAUUGUACUCGUUGAGGAUGAUAUCGCAAGGUAUCAUUAAAaAAAGGUGGGACCACGUGAgcAGCAgcUCUCGUCCUUUUC 1122 *****************************************************************************************.*************.889********88999**************999****999999999*********************88999999999**************************7777*****************9665555899************ PP >> fig|457570.14.peg.2105 [L=4122] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 6.1e-27 118.4 0.0 T-box 1192 1446 + cm no 0.40 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.1e-27 118.4 0.0 cm 1 224 [] 1192 1446 + .. 0.95 no 0.40 v v v v v v vv vv NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____..................._________>>>>>>>,<<<______>>>,,,,,,,,,,,,,,,,,,,<<<<<<<___.........................._____>>>>>>>,,,,<<<<-------<<<<<______>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg...................uuaauAgUAgggaaagaCGguuucgccCGUUAuUgauuauauaaAGaGguuguuguaa..........................aaAUucaacaacAAauagGGUGGUACCgCGagaAuaAUcuCGuCCcuUuu 224 UAAAA:CAAUGAA:GGGAA AGUA:::C :A+C+U+A CAGAGA:CCGG GG +G+UG +A+CCGG:A + +U: G:::GAA + ++CCC:GGAG:+ C:: ::GAA+ +AGUA:: ::G CG: UU :CGUUA AUU +++ AAG+G::U::::+ A A +UU::::A::AA U::GGUGGUACCGCGA: :UCGUCC::U U 457570.14.peg.2105 1192 CUAAAAUCAAUGAAGGGGAACAGUAGACCUUAACUUAA---ACCAGAGAACCGG-GGCAGCUGGAAACCGGUA--ACUUUAUGGUCGAAUUACACCCUGGAGAUGCAAUUUUGAAAcuugucauuauuauccgggCAGGAAGUAAAUUUUGCCGCCUU-AGGCGUUA---AUUUAUACAAGUGACUUCACAUAuaauuuacugugauuuauaguuguaaAUUUUGUGAAGUAACUCAGGUGGUACCGCGAA---CC-UUCGUCCUGUGU 1446 *******************************9976666...46***********.7778*************3..3347899*********************************889*****************99999******************.99******...99999***************999*************************999999**************************7...44.7*********** PP >> fig|500633.7.peg.452 [L=3780] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 5.2e-32 137.8 0.0 T-box 1094 1350 + cm no 0.41 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 5.2e-32 137.8 0.0 cm 1 224 [] 1094 1350 + .. 0.97 no 0.41 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____....._________>>>>>>>,<<<______>>>,,,,...........................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<_____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg.....uuaauAgUAgggaaagaCGguuucgccCGUUAu...........................UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGagaAuaA...UcuCGuCCcuUuu 224 + AAAGC+A GAAG:G:AA AGUA::U: :A+ + :UUU+CAGAGA:::::CGGUUGGUG+GAG:::::AA:+A ++: :A::GAA ++:C:C GAGCAU:::: C + A+ U+ + GUA G ::::ACGGU + CCCGUUAU UA + +A+GAG :U::U:U ++ A :A::A: AA +::GGUGG ACC:CG: A UAA U :CG:CC::U 500633.7.peg.452 1094 GAUAAAGCGAAGAAGAGAAAUAGUAGAUAGUAA--AGUCUUUUCAGAGAGAUUUCGGUUGGUGUGAGAAAUCAAGAACUAAUUAUCGAA-CACAUCUCAGAGCAUAGCACCGAGAAagaaaGUUCAUGUAGGCUGCUACGGUAGUACCCGUUAUcguacaaggguaucgucuuuuaauaagACUGUACUCUAUGAGGCUAGUAUCGUGAGGUACUAGUgAAGAGAGGUGGAACCACGGAAUUAAuacUCCCGUCCUCUAG 1350 ********************************9..******************************************************.*******************887777579***999*********************************************************9999*********************************8888*****************95555568************* PP >> fig|545696.5.peg.1772 [L=3798] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 8.3e-27 117.7 0.0 T-box 1135 1393 + cm no 0.46 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 8.3e-27 117.7 0.0 cm 1 224 [] 1135 1393 + .. 0.91 no 0.46 v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<___._..._________>>>>>>>,<<<____...__>>>,,,,...................,,,,,,,,,,,,,,.,<<<<<<<________>>>>>>>..,,,,<<<<-------<<<<<_...____......._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAA.g...uuaauAgUAgggaaagaCGguuuc...gccCGUUAu...................UgauuauauaaAGa.GguuguuguaaaaAUucaacaac..AAauagGGUGGUACCgCGaga...AuaA.......UcuCGuCCcuUuu 224 AUAA AGC+AUGAA::G:AAAAGUAA::C::A+C+ : U CAGAGAG::::CGGU GGUG +AG::::UA :++AA+::G::UGAA ++:C::GGAGCA : :: CCGAA G + + +AGUAGG :: : CGG+ C CCCGUUAU U+ UA + AAGA G:U: :U:U ++ A :A: :A: AA+UA:GGUGG ACC:CGA +AA U UCG:CC:U fig|545696.5.peg.1772 1135 AUAACAGCGAUGAAAAGAAAAAGUAAACCUGAACUGCUCGUC-CAGAGAGUUCCCGGUCGGUGCAAGGGAAUAUGAGAAACAGGUUGAA-CACAUCUUGGAGCAAUUCA-CCGAAcGaggAAUCAAGUAGGCUGGAUCGGAACCuguACCCGUUAUcguacuagaguauagaaguUUUGUACUCGAAGAgGCUGGAUUUCGUGAGGAAUUCAGugAAUUAAGGUGGAACCACGAAGgga-AAAacgacccUCUCGUCCUUAGC 1393 *********************************777777775.*****************************9999999**********.*******************.5666625899*********************99999999**************************666666666666665888888999999999999888888********************98763.333588888889*********** PP >> fig|1122950.3.peg.1659 [L=3795] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.4e-28 123.7 0.1 T-box 1136 1384 + cm no 0.43 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.4e-28 123.7 0.1 cm 1 224 [] 1136 1384 + .. 0.94 no 0.43 vv vv v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<_____________>>>>>>>,<<<______>>>,,,,..................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>.,,,,<<<<-------<<<<<_~~~~~~>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAguuaauAgUAgggaaagaCGguuucgccCGUUAu..................UgauuauauaaAGaGguuguuguaaaaAUucaacaac.AAauagGGUGGUACCgCGaga*[ 5]*cuCGuCCcuUuu 224 ++ AA :C+A GA+::G:A AGUA::U A:AU U+ U::U CAGAGAG::G::GGUUGGUGA+A::C::U::AU+A+ :U A::GAA ++:C:: GAG:+ ::U: CGAA +U+A AGUAGG :A::ACGG+U C CCCGUUA + UA U A+GAGG::: :U ++ A +: :::C AA++::GGUGG A C:CGA UCG:CC::U + 1122950.3.peg.1659 1136 UAGAAGACGAGGAUAAGAACUAGUAGAUGAUAU--UAGUCAUGCAGAGAGUUGCUGGUUGGUGAAAAGCAAUUGAUGAGGAUUAUUGAA-CACAUCUUUGAGUUGGGUAC-CGAA-AUUAGAGUAGGCUACCACGGGUGCACCCGUUACagugcuaagguauaguauCUUGUACCUGAUGAGGCCAUUAUCGUGAGAUUGUGGCgAAUAGAGGUGGGAACACGAAG*[16]*CUCGUCCUCUGA 1384 ********************************9..******************************************************.*****************995.5555.5999***********************************************889999*******************************9999***************975...5..7*********** PP >> fig|1211819.3.peg.951 [L=3798] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.4e-26 115.9 0.0 T-box 1138 1396 + cm no 0.45 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.4e-26 115.9 0.0 cm 1 224 [] 1138 1396 + .. 0.88 no 0.45 v v v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>.>>>----->>>>>>-------->>>>--->>,,<<<<<<<___._..._________>>>>>>>,<<<____...__>>>,,,,...................,,,,,,,,,,,,,,.,<<<<<<<________>>>>>>>.,,,.,<<<<-------<<<<<_..____......_>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccggu.aaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAA.g...uuaauAgUAgggaaagaCGguuuc...gccCGUUAu...................UgauuauauaaAGa.GguuguuguaaaaAUucaacaac.AAa.uagGGUGGUACCgCGaga..AuaA......UcuCGuCCcuUuu 224 AUAA AGC+AUGAA::G:AAAAGUAA::C: + + U::U CAGAGAG:: :CGGUUGGUG +AG: ::U ::A AAA+ :G::UGAA ++:C::GGAGCA : :: CCGAA G + + +AGUAGG :: : CGG+ C CCCGUUAU U+ UA + AAGA G:U: :U:U + A :A: :A: AAA UA:GGUGG ACC:CGA A+AA U UCG:CC:U UU 1211819.3.peg.951 1138 AUAACAGCGAUGAAAAGAAAAAGUAAGCCUUGA-UCGCUCAUCCAGAGAGUUUCCGGUUGGUGCAAGGGAAUaUGAGAAAACAGGCUGAA-CACAUCUUGGAGCAAUUCA-CCGAAcGagcAAUCAAGUAGGCUGGAUCGGAACCuguACCCGUUAUcguacuagaguauagaagcUUUGUACUCGAAGAgGCUGGAUUUCGCGAGGAAUGCAGuAAAuUAAGGUGGAACCACGAAGggAAAAguacccUCUCGUCCUUAUU 1396 *****************************9998.677788888*****************************7777787***********.*******************.66666258999********************99999999**************************7778888888888835555577777777777777555555556****************9876444478899999*********** PP >> fig|1233170.3.peg.2497 [L=3792] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.9e-27 119.5 0.2 T-box 1134 1401 + cm no 0.38 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.9e-27 119.5 0.2 cm 1 224 [] 1134 1401 + .. 0.94 no 0.38 v v v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<____......_________>>>>>.>>,<<<____.....__>>>,,,,............................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_...____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAAg......uuaauAgUAgggaa.agaCGguuuc.....gccCGUUAu............................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGaga...AuaA...UcuCGuCCcuUuu 224 +UAAA+GC AUGAA::G:AA AGUAA:::::AU ++U :UU ACAGAGA:C+::CG UUGGUGAGAG:: G:AA:U+A +U:::::UGAA ++:C:: GAGC+ :::: C +AAG U +UAGUA G :: :: CGG+UUC CCCGUUAU UA + AAAGAG UU: U:U + A +:A :AA AAA +::GGUGG ACC:CG GA U UC CG:CC::U 1233170.3.peg.2497 1134 UUAAAUGCUAUGAAAAGAAAUAGUAAAAGUAAU-UAUCUUUAACAGAGAGCUACCGUUUGGUGAGAGGU-GCAAUUGAuUUUACUUUGAA-CACAUCUUUGAGCUGAACACCGAAAGgauauuCUCUUAGUAGGCUGaUUCCGGAUUCccugcACCCGUUAUagugcuagaguauaagcaaauauuauuuGCCGUACUCAAAGAGGUUAGUAUCGCGAGAUAUUAAUAAAauAGAGGUGGAACCACGUGAgauUU--aacUCCCGUCCUCUAG 1401 ********************************9.8999******************************9.788888888***********.*****************99777777689****99*********9999*********99999999**********************************989999********************************55557*****************985333..469************* PP >> fig|1233171.3.peg.1791 [L=3792] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 2.8e-27 119.5 0.1 T-box 1135 1402 + cm no 0.38 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 2.8e-27 119.5 0.1 cm 1 224 [] 1135 1402 + .. 0.95 no 0.38 v v v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>---.-->>>>>>-------->>>>--->>,,<<<<<<<____......_________>>>>>.>>,<<<____.....__>>>,,,,............................,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_...____..._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaa.augugaauGAAaauugCCccgGAGcaucuuucccGAAg......uuaauAgUAgggaa.agaCGguuuc.....gccCGUUAu............................UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGaga...AuaA...UcuCGuCCcuUuu 224 +UAAA+GC AUGAA::G:AA AGUAA:::::AU ++U :UU ACAGAGA:C+::CG UUGGUGAGAG:: G:AA:U+A +U:::::UGAA ++:C:: GAGC+ :::: C +AAG U +UAGUA G :: :: CGG+UUC CCCGUUAU UA + AAAGAG UU: U:U + A +:A :AA AAA +::GGUGG ACC:CG GA U UC CG:CC::U 1233171.3.peg.1791 1135 UUAAAUGCUAUGAAAAGAAAUAGUAAAAGUAAU-UAUCUUUAACAGAGAGCUACCGUUUGGUGAGAGGU-GCAAUUGAuUUUACUUUGAA-CACAUCUUUGAGCUGAACACCGAAAGgauauuCUCUUAGUAGGCUGaUUCCGGAUUCccugcACCCGUUAUagugcuagaguauaagcaaauauuguuuGCCGUACUCAAAGAGGUUAGUAUCGCGAGAUAUUAAUAAAauAGAGGUGGAACCACGUGAgauUU--aacUCCCGUCCUCUAG 1402 ********************************9.8999******************************9.788888888***********.*****************99777777689****99*********9999*********99999999**********************************989999********************************55557*****************985333..469************* PP >> fig|1158608.4.peg.388 [L=11191] Hit scores: rank E-value score bias modelname start end mdl trunc gc description ---- --------- ------ ----- --------- ------ ------ --- ----- ---- ----------- (1) ! 6.8e-28 123.7 1.3 T-box 4589 4862 + cm no 0.37 T-box leader Hit alignments: >> T-box T-box leader rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 6.8e-28 123.7 1.3 cm 1 224 [] 4589 4862 + .. 0.95 no 0.37 v v v v v v NC ::::::<<------<<<<-------<<<<<<-------<<<--------<<<<<<___________>>>>>>>>>----->>>>>>-------->>>>--->>,,<<<<<<<____....................................._________>>>>>>>,<<<______>>>,,,,.............,,,,,,,,,,,,,,,<<<<<<<________>>>>>>>,,,..,<<<<-------<<<<<_____.._>>>>>>>>>::: CS T-box 1 auaAAagCaaUgAaggGGAAaAGUAauucacauccuuauuuUacAGAGAgccggcGgUuGgUGaGAgccgguaaauaaaugugaauGAAaauugCCccgGAGcaucuuucccGAAg.....................................uuaauAgUAgggaaagaCGguuucgccCGUUAu.............UgauuauauaaAGaGguuguuguaaaaAUucaacaacAAa..uagGGUGGUACCgCGagaAuaA..UcuCGuCCcuUuu 224 +AA :CAAUGA+::G A AGUA: U:A + UU :UUU AGAGAG::::CG UUG+UG +AG::::UAA: AA+ U:A :GAA +G C:: AG:+ :UUU:C:GAA+ + A+ AGUA:G:AAA: CGGU + G+CCGUUAU + +A ++A AGAGGUU:UU: ++ A :AA:AACAAA U::GGUGG ACC:CG GAA+AA UC CG:CC::UU 1158608.4.388_rna 4589 GAAAGGACAAUGAUCAGA-AUAGUAGGUGAAUCGAUUUGUUU-UAGAGAGUUUCCGUUUGCUGCAAGGAAAUAACGAAUCAUCAUCGAA-CACGCCUGUAAGUUGUUUUUCUGAAAuaagaaguuuaguuuagcgaaguuugauucguuuucuAGAUGAGUAGGAAAAAUCGGUGA-GUCCGUUAUcacuccuuaguuuAUCGAACUAACAGAGGUUUUUACUGUGAAGUAAAAACAAAucUGAGGUGGGACCACGUGAAAAAuuUCUCGUCCUCUUG 4862 *****************9.**************999999887.8*********************************************.*************************87899999999999999999999999999999999998888889999************99.**********************99999********************************8877******************9777789************* PP