>FFV
-----------------------------------------------------------QGVLI--QKESTMNTPVYPV-PKP-NGRW--RMVLDYRAV--NKVTPLIAVQNQHSYGILGSLFK--GRYKTTIDLSN-GFWAHPIVPEDYWITAFTWQG-------KQYCWTVLPQGFLNSPGLFTGDVVD------------LLQGI------PNVEVYV----------------------------------------DDVYISHDSE-KEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQIT---NEGRGLTDTFKEKLENIT-APTTLKQLQSILGL----LNFARNFIPDFTEL-IAPLYALIPKST----KNYVPWQIEHSTTLETLITKLNGAEYLQGRKGDKTLIMKVNA---SYTTGYIRYYNEG----EKKPISYVSIVFSKTELKFTELEKLLTTVHKGLLKALDLSMGQNIHVY--SPIVSMQNIQKTPQTAKKALASRWLSWLSYL-EDPRIRFFYDPQMPALKDLPAVDT------------------GK---DNKKHPSNFQHIFYTDGSAITSPTKEGHLNAGMGIVYFINKDGNLQKQQEWSISLGNHTAQFAEIAAFEFALKKCLP-LGGNILVVTDSNYVAKAYNEELDVWASNGFVNNRKKPLKHISKWKSVADLKR-LRPDVVVTHEPGHQKLDSSPHAYGNNLADQLATQASF-----------
>SFV
--------------------------------------------------QIVIDDLLKQGVLT--PQNSTMNTPVYPV-PKP-DGRW--RMVLDYREV--NKTIPLTAAQNQHSAGILATIVR--QKYKTTLDLAN-GFWAHPITPDSYWLTAFTWQG-------KQYCWTRLPQGFLNSPALFTADAVD------------LLKEV------PNVQVYV----------------------------------------DDIYLSHDNP-HEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLGFNIT---KEGRGLTDTFKTKLLNVT-PPKDLKQLQSILGL----LNFARNFIPNFAEL-VQTLYNLIASSK----GKYIEWTEDNTKQLNKVIEALNTASNLEERLPDQRLVIKVNT---SPSAGYVRYYNES----GKKPIMYLNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVY--SPIVSMTKIQKTPLPERKALPIRWITWMTYL-EDPRIQFHYDKTLPELKHIPDVYT------------------S--SIPPLKHPSQYEGVFCTDGSAIKSPDPTKSNNAGMGIVHAIY-NPEYKILNQWSIPLGHHTAQMAEIAAVEFACKKALK-VPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKEPLKHISKWKSIAECLS-IKPDITIQHEKGHQPINTSIHTEGNALADKLATQGSY-----------
>EFV
--------------QVGHRRITPHKIATGT-LNPKPQKQYRINPKAKADIQIVIDDLLKQGVLK--QQTSPMNTPVYPV-PKP-DGRW--RMVLDYRAV--NKVTPAIATQNCHSASLLNTLYR--GQYKTTLDLAN-GFWAHPIQESDQWITSFTWNG-------KSYVWTTLPQGFLNSPALFTADVVD------------LLKDI------PNVEVYV----------------------------------------DDVYFSNDTE-EEHLKTMDLLFQKLQTAGYIVSLKKSKLGQHTVDFLGFQIT---QTGRGLTDSYKSKLLDIT-PPNTLKQLQSILGL----LNFARNFIPNYSEL-ITPLYQLIPLAK----GIYIPWETKHTAILQKIIKELNASENLEQRKPDVELIVKVHV---SPTAGYIKFANKG----SIKPIAYHNVVFSKTELKFTITEKVMTTIHKALLKAFDLAMGQPIWVY--SPIHSMTRIQKTPLTERKALSIRWLKWQTYF-EDPRLIFHYDDTLPDLQNLPQT--------------------TLGNEVDILPLSEYEVVFYTDGSSIKSPKKDKQHSAGMGIIAVRY-QPQMNIIQEWSIPLGDHTAQFAEIAAFEFALKQAIR-KMGPVLIVTDSDYVAKSYNQELDFWVSNGFVNNKKKPLKHVSKWKSIADCKK-HKADIHVIHEPGHQNDLQSPYAMGNNAADKLAVKASY-----------
>BFV
LLDQYQALWQCWENQVGHRRIEPHKIATGA-LKPRPQKQYHINPRAKADIQIVIDDLLRQGVLR--QQNSEMNTPVYPV-PKA-DGRW--RMVLDYREV--NKVTPLVATQNCHSASILNTLYR--GPYKSTLDLAN-GFWAHPIKPEDYWITAFTWGG-------KTYCWTVLPQGFLNSPALFTADVVD------------ILKDI------PNVQVYV----------------------------------------DDVYVSSATE-QEHLDILETIFNRLSTAGYIVSLKKSKLAKETVEFLGFSIS---QNGRGLTDSYKQKLMDLQ-PPTTLRQLQSILGL----INFARNFLPNFAEL-VAPLYQLIPKAK----GQCIPWTMDHTTQLKTIIQALNSTENLEERRPDVDLIMKVHI---SNTAGYIRFYNHG----GQKPIAYNNALFTSTELKFTPTEKIMATIHKGLLKALDLSLGKEIHVY--SAIASMTKLQKTPLSERKALSIRWLKWQTYF-EDPRIKFHHDATLPDLQNLPVPQQ------------------DTGKEMTILPLLHYEAIFYTDGSAIRSPKPNKTHSAGMGIIQAKF-EPDFRIVHLWSFPLGDHTAQYAEIAAFEFAIRRATG-IRGPVLIVTDSNYVAKSYNEELPYWESNGFVNNKKKTLKHISKWKAIAECKN-LKADIHVIHEPGHQPAEASPHAQGNALADKQAVSGS------------
>Canis_lupus_familiaris_CARenvV_RT
-------------------NVYPIQIKLKPRAGCPWEXXDPIQSKSLRGTQSLISQFLKYGLIE--PCQSPCDTPDLAV-RQS-SGEY--FFAQDLRAV--NKIIVPLHPRVPRLNHLLSQVPG-DAQFSTVPDLKD-AFFCIFHHEEGQDLLAFEXKTPGT-XGATXYTWTVLPXGFGDSPHLFGNVLCKTVK-----------WELKVR--DGILLQYV----------------------------------------ENLLIASLAK-QASDNKTIQTXNFLVKRGYRVPPSKAHISQQXGQYVDLILT-----PDWVSQEDHQHYAHF---PNQKATLCGFQDM----AELSCIWFPNYGLM-LTPLIGLEWGE-----RDPNN--TDVTGPFXSLENWIGWGPCPSLDKPFTXMSLRGRE-LLWGSXLKS-WTLIR----DWXPVFQN--NXTQLHRHGPAAYKQXQPSSLSE----RDPXADLGQLL---TTHQVQTVLEIKEYHW-LTRERLTKDQVLSLDSPDVILNVCQT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>Felis_catus_CARenvV_RT
----------------------------KPSAGCLEKKXFPIKNKSLGGIQLIISKFLKYGWIK--PCQSPCNTPVLPV-RKP-SGEY--CFVQDLRAV--NKAV-LIYLVVPNPYTLLTQGLG-DAKFFTILDLKG-AFFCTSLYEESHYLLAFEWKTPDT-QDTTQHTWMVLSWGLRDTPHCFPGALETPPTNLFGNIVAKELQELKLR--HGILLQH-----------------------------------------GDLLIASLTK-QSSDCNTAKTLCFLANRGYRVSPIKGSHITTTGPISGFHPISRHPCPGHGSQEDQQRLPT----LPTRKQLRGFLDT----REFSCIWFPSYSPD-AKPLYEALKGEE----REPLQ--XTVLGGFXSLENGAGWSPCTGVPLFGXTFYLIYPX-DAGFG-GPN-SKAGP----XSETTFQN--NXTQLHRDGPAVMATS----LLA-----RPVSLPRVSL---TPCQVQTMLETRGHHW-LTGGRLTKYQALLPDSPDILKVSMETVEQ--------------------------TSSRPDLQDKPLDNLDMVSFMDRTLVE--R--GIWKAGYVIVNL-------SRVIEARAHLNTSSTQKVDLL------QLGEG-K--RXNLYTDSKYGFHVLHALAAVQKDRKMLTAR-------------------------------------------------------------------
>Bos_taurus_ARTenvV_RT
----------------------------------------------------MLTKFLKHRPTD--PSQSYYSTRILPS-KKPHRDMFWPRFVQDLWVI------HPIHPLVPNPYIHPTHLNARGAQYFSLLDLKD-ACS---LSPFIQTLTPFCLXMEGT--XYPGSTWTVLPWGFLXSPHLFGNALAK------------ELMELGLX--CGRLCSSMLMTYXLLFSHXIMSDSLCPHGLQHTRLPVLHCLPEFAETHVXPLISCEIR-QDSDQNTVKVPSFLAERGYKVSSTKPDLLQ-QVQCLGFVLT---PWPX----IRKQQFVHYH-LQPQRDNSEAFSECLGSAVSGFQAWPYVXSSEGRKGTLSVEXGAPIALXDSRLSXAKHQHWGFQIXTN-------------PSPYPXEGRD-----STRSPDPKIGS----RSTASGLLLRTVLLSSLGMPQLPSGVSSMALLVSEACKLTLGQHLDKL---TLHQVQSVLEAKGYHW-XTRGRLAKYQVLLMDAPDITLKVCQALNPALLPAIENG----NLLHQCTETVKQTYSVRSSLLDEPHDNPEAERFIDRSSL---------------------------------------------------------------------------------------------------------------------------------------------------------------
>WDSV
------QLWASLPTDIGRMLVPPITIKIKDNASLPSIRQYPLPKDKTEGLRPLISSLENQGILI--KCHSPCNTPIFPI-KKAGRDEY--RMIHDLRAI--NNIVAPLTAVVASPTTVLSNLAP-SLHWFTVIDLSN-AFFSVPIHKDSQYLFAFTFEG-------HQYTWTVLPQGFIHSPTLFSQALYQ------------SLHKIKFK-ISSEICIYM----------------------------------------DDVLIASKDR-DTNLKDTAVMLQHLASEGHKVSKKKLQLCQQEVVYLGQLLT---PEGRKILPDRKVTVSQFQ-QPTTIRQIRAFLGL----VGYCRHWIPEFSIH-SKFLEKQLKKDT----AEPFQLDDQQVEAFNKLKHAITTAPVLVVPDPAKPFQLYTSH-SEHASIAVLTQKHAG----RTRPIAFLSSKFDAIESGLPPCLKACASIHRSLTQADSFILGAPLIIY---TTHAICTLLQRDRSQL-VTASRFSKWEADLL-RPELTFVACSAVSPAHLYMQSCE--NNIPPHDCVLLTHTISRPRPDLSDLPIPDPDMTLFSDGSYTTGRG--G-AAVVMHRPVT-------DDFIIIHQQPGGASAQTAELLALAAACHLATD-K--TVNIYTDSRYAYGVVHDFGHLWMHRGFVTSAGTPIKNHKEIEYLLKQIM-KPKQVSVIKIEAHTKGV-SMEVRGNAAADEAAKNAVF-----------
>WEHV2
------SLWASSPTDIGKMKIPPIKIEVLP-LPCPRIRQYPLPKEKVNGLRPMIESLLAQGVLA--ECHSSCNTPIFPI-QKPGRQEY--RMIHDLRAI--NEIVAPLTAVVASPTTVLANLSP-DMKWFTVIDLSN-AFFSVPVHPDSQYLFAFTFEG-------RQYTWTVLPQGFIHSPTLFSQALFS------------SLSKIKDS-LTSEVCIYM----------------------------------------DDVLIASTTK-DINIKDTVTLLHHLADEGHKVSQKKLQLCKTEVIYLGQLLS---DRGREILPDRKETVSQFS-SPTTVRQVRAFLGL----AGYCRHWIPDYSEQ-SKYLEELLKKEV----EEPFSLTEKQTEAFQKLKQSLITAPVLAIPDYKKDFELYTSH-TEHVAIAVLSQKQGG----RSRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADSFLLGRPVKIY---TTHSICTLLQRDRSQL-VTASRFSKWEADLL-RPELTFVTCTAVSPAHLLATATS--GDTPPHDCVLLTHTMSRPRPDLSDVPLPHPDLILFTDGSYSKGEG--G-GAVVEYVPST-------DTFKTVSACSGFTSAQTAELCALTSACLHAKS-K--SVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTPIKNHNEIQSLLEAVM-MPEQISVMKCPAHTKGM-TLEIRGNAAADEAAKKAV------------
>WEHV1
-----ESLWASSPTDIGKMKITPIHIEVLP-VPCPSIRQYPLPKEKVEGLRPMIHSLLAQGVLT--ECHSSCNTPIFPI-KKPGREEY--RMIHDLRAI--NEIVAPLTAVVASPTTVLANLSP-DMTCFTVIDLSN-AFFSVPIHPDSQYLFAFTFEG-------RQYTWTVLPQGFIHSPTLFSQALFS------------SLSKIKDS-LTSEICIYM----------------------------------------DDVLIASKDE-ETNYKDTATMLHHLADEGHKVSKKKLQLCKSEVVYLGQLIS---KAGRDILPERKKTVSQFA-APTTVRQVRAFLGL----AGYCRHWIADYSEN-SKHLEELLKKEV----IEPFTLTGEQLRAFEQLKSTLLSAPVLAIPDYRKDFELYTSH-TDHVAVAVLAQKQAG----RTRPIAFLSAKLDAIEQGLPPCLRACASIHKNLTQADSFLLGRPVKIY---TTHSICTLLQRDRSQL-VTASRFSKWEADLL-RPELTFVTCTAVSPAHLLATATS---GDPPHDCVLLTHTMSRPRSDLSDVPLEKPELILFTDGSYSKGEG--G-CAVVQYAPEK-------DTFLTVAACTGFTSAQTAELAAITLACQYAED-K--SVNIYTDSRYAFGVLHDFGHLWQHRGFVTSAGTPIKNHEMIQKLLEAVQ-LPSKISLMKCPAHTKGV-TLEIRGNAAADEAAKKAVSM----------
>Mer66
-------------------NVLPVQVILKPRVKYPYKKQRTLRPEEQRGIQPLIRKFLKYGLLQ--SRQSLRNTSILVV-KKL-NGEY--RFVQNLRAV--NEAIVPVHZIVTNSYTILTQVPE-DVN-FMVLGLKD-AFFCIPLHVDTQYIFAFEWTDPDI-HAASHLTWAVLPQGFRDSPHFFVNTLAK------------ELRKLZLN--NGSLZQYM----------------------------------------DDLLISSPTR-EGCDRNTIQILNFFEKMRLGYSYNKAQISAQKVKYLEYVLT---PGANTLAQEZKETILALQ-PPQTKKQLRIFLGM----ARFFWIWSPRFGLI-AKPLYEALKESD----HEPLNWDGTCQQAFLTLKEKLGTAPALZLPNLEKPFTLYVAE-KQGTALGVLTQSLVN----SPIPVAYFSKQLDQVVAGWPGCFZAVATTTLL-VEVSKFTLGQQLDVM--TCPHQIQGILEAKGHQC-LTVVQLLKCQVLLCDTADVTFKICCFKSCYPVAGLHVP---VPNSFTPVWKLEQSSSSRPDLKDESLPNPNVEWFRDGSSFIHE---GLKRQVM-LWLV-------NNVIEAKALPPQTSAQKVELNALIRALQLGKD-L--RINIFTDPNMGSWCSMLTS-HMEKRGLLTAIGSPIQHHSEILELLDAVQ-LPKEITIIHCZGHQKGD-TSIIRRNVLVDRAVMASAK-----------
>Balaenoptera_acutorostrata_ARTenvV_RT_tBLASTn
-------------------HVPPIEIEEKPGEKYPWQRHCPLKPEVLR--QPLLTKFLEPGLIR--PCXSP--SLILPI-QKP-PGDT--GIPVCARLTSGAXGSRPSHSPSGAKPVHRTXMPG-GAQYFSLLDLKD-VFFCIPLHPDSQYLFAFEWKELDT-WEAIHYTWTVLPQGLRDSCCVFGNALAK------------ELRELSLK--NGTLLQYV----------------------------------------DDLLIKK-----DSDQNTVKVLNFLAERGYKVSPTKTQISXQEFQYLGFVLT---PITXALAINQKTAINALP-SPTTKRQLRGFLRM----AGFCHIXIPDYGLI-VKPLXEALKGEE----REPLXWSRDHQWDFETLKIELSRAPALGLPNLDKPFTL---------ALGVLTQKLGA----DQRAVVYFSKQLDSVAPRCPSCLQAVAATALLVNEPSELTVGQYGTILDASTLHQVQSVLEAKGHHW-LTGGRLAKYQALLTGTPDITLKVCQALNPATLLTAVEN---GDLLHQCTQTIEQTYSSRSSLLDEPLDNPEAERFTDGSSFIEM---GTRMAGA-IVSL-------NEIIEAKAPPPQTSAQK---------------------NIFTDSKYGFHVLHAHAAIWRERGMLTARNSSIKPKDLILALLEAVQ-LLTQVAVIHCKGHQKDG-SFISQGNN----------------------
>Prima41
------------------LNVPLVCIXLKPDALYSWKRQDPLKPEAXRGIHPLRTKFLQFGLLR--PFKFPCNTLILPI-KKP-NGDY--IFVQDLXAV--NSAVIPKHPVVLNPYMLLAQVLG-DASWFTVLDLRDFFFFCIXVYPDSKFIFAFGWTDPDS-HLVSQLTWMVFPQECRDSPHLFGNTLTR------------ELKMLKLN--RGTSIWYV----------------------------------------NDLLVASPTK-RGSNKNAIKLLNFLDTNGYRVSLHKAHVSTQEVKYLRYVLT---PGTWAIAPEKKEVILGIL-EPQTRKQLWDFLRM----GRFCSXXVPGFGHM-AKSLCKALKGAH----VIFLNAVSIVKHTFNTLKEKLGTTPALGIPNLDKPFPLFGXK--TRNALEVLVQKLGG----IPRPVAYFSKXLDHVALGWPRCLRAVAAMALLVYEANKLALGQHLEVL---TPHQVQGVLEAKRHQR-MTGGHVYKYQALLLNTPDITLKVCQTLNPATYLPE-PT---GTLDHSCIQVMEQVYSSCPDLKDEPLDNPEVEWFTDGSSFVHQ---GNGKAGYAVVSQ-------HEVIESQALPASTSAQKAELIALIRALQLGKD-L--RINISTDSKYAFLVLHAHAAIWKEWGLLTAKGSPIKHHLEIRNLLDAVL-LPKEVAIIHCRGHLKGN-SSVTKGNSFADAAAKATAL-----------
>HERV-H
-----------------VTNHAPLTISLKPNHSYPAQCQDPIPQHALKGLKPVITRLLEHGLLK--PINSPYNSPILPV-LEP-DKPY---RVQDLCLI--NEIVFPIHPVVLNPYTLLSSIPP-STTHYSVLDLKH-AFFTIPLHPSTQPLFVFTWTDPDT-HQSQQLTWAVMLQGFRGSPYYFSQALSH------------DLLSFHPS--TSHLIQYI----------------------------------------GDVLLCSPSF-ESSQQDTLLLLQHLFSKGYRPS--KAQMSSPSVTYLGIILH---KNTRALPADSVXLISQTP-TPSTKQQLFSILGM----VGYFRVRIPGFAIL-TKPLYKLTKGNL----VDPIDPKSFPHSSFHSLKTALETVSTLALPDSSQHFSLHTAE-VQGCAVRILTQGPGS------HPVAFLSKQLDLTVLGWPSCLHAASAATLILLEALKITNYAQLILY---SSHNFQNLFSSSHLTHILSAPRLLQIYSLL-YSPTITIIPGLDFNPASHIILDTI----PDPHDCISLIHLTFTPFPHISFCPVSHPDHTWFIDGSSTRPN-----------------------------RHSPAKAGYASELVALIQALTLAKG-L--RVNIYTDSKYAFHILHHHAVIWAERGFLTTQVSSIINASLMKTLLKAAL-LPKEAGVIHCKGHQKTS-DPIALGNAYADKVARQAASS----------
>HERV-Fc2
---------------SIARHHAPIMIKLKDPTKFPSRPQFPISVEHRQGLKPIITRLLQQHILI--PVNSRCNTPILPI-RKA-SGAY--RLVQDLRII--NEAVVPIFPVVPNPYTLLSRIPP-TTTHFTVLDLKD-DFFTIPLHPDCYFLFAFTWEDPDT-HVSSQLAWTVLPQGFRDSPHLFGQALAK------------DLSTCTLA--DSTLLLYV----------------------------------------DDLLLCSPSL-SVSQQDTATILNFLGKQGYRVTPHKVQLCTPTVTYLGISLT---ATTKSLTTDRVSLIKDLQ-LPQDADKILSFVGL----VGFFRHWIPNFGVL-AKPLYQAAKETP----TGPLSDPALVARHFRRLQQCLLTAPVLSLPNPLRPFHLYTDE-LQGVATGLLGQPVGP----TYQVVAYLSRQLDPSTRGWQPCLRALAAAAELTKEALKLTLNHPLTVY---SPHRLTDVLSHKCLAH-LAPSRIQLFHVLFVENPDITLTASPPLNPATLLPIEASEPSPVLSHSCPELLTSIPNSRLGLFDRPLSNPDSTLFVDGSSVLTPC--GRRQAAYAVVTH-------DKTVEAAALPLGTTSQKAELLALTRALLLSQG-Q--RVNIYTDSKYAYSIARTHSVLWQERGFLTMKGTSIVNGPLIHKPLNALQ-APREVAIIHCKSHQHSK-DPVAQGNNLADSTAKSLAL-----------
>HERV9
--------WALEGQFGRAKNAHPVQIRLKDPTTFPYQRQYPLRPEAHKGLQDIVKHLKAQGLVR--KCSSPCNTPILGV-QKP-NGQW--RLVQDLRLI--NEAVIPLYPVVPNPYTLLSQIPE-EAEWFTVLDLKD-AFFCIPLHSDSQFLFAFEDPT----DHTSQLTWTVLPQGFRDSPHLFGQALAQ------------DLGHFSS--PGTLVLQYV----------------------------------------DDLLLATSSE-ASCQQATLDLLNFLANQGYKASRSKAQLCLQQVKYLGLILA---RGTRALSKEXIQPILAYP-RPKTLKQLRGFLGI----TGFCRLWIPGYSEI-ARPLYTLIKETQR-ANTHLVEWEPGAETAFKTLKQALVQAPALSLPT-GQNFSLYVTE-RAGIALGVLTQTRGT----TPQPVAYLSKEIDVVAKGWPHCLXVVAAVAILVSEAIKIIQGKDLTVW---TTHDVNGILGAKGSLW-LSDNRLLRYQALLLEGPVLQIRTCVALNPATFLPEDGE----PIEHDCQQIIVQTYATRDDLLEVPLANPDLNLYTDGSSFVEN---GIRRAGYAIVSD-------VTVLESKPLPPGTSAQLAELVALTRALELGKG-K--RINVYTDSKYAYLILHAHAAIWKEREFLTSGGTPIKYHKEIMELLHAVQ-KPKEVAVLHCQSHQKGE-GEKAEGNCRADAEAKIAARRNL--------
>HERVW
-----PEVWATEGQYGRAKNARPVQVKLKDSASFPYQRQYPLRPEAQQGLQKIVKDLKAQGLVK--PCNSPCNTPILGV-QKP-NGQW--RLVQDLRII--NEAVVPLYPAVPNPYTLLSQIPE-EAEWFTVLDLKD-AFFCIPVHPDSQFLFAFEDPS----NPTSQLTWTVLPQGFRDSPHLFGQALAQ------------DLSQFSY--LDTLVLRYV----------------------------------------DDLLLAARSE-TLCHQATQALLNFLATCGYKVSKPKAQLCSQQVKYLGLKLS---KGTRALSEERIQPILAYP-HPKTLKQLRGFLGI----TGFCRIWIPRYGEI-ARPLYTLIKETQK-ANTHLVRWTPEAEAAFQALKKALTQAPVLSLPT-GQDFSLYVTE-KTGIALGVLTQVRGT----SLQPVAYLSKEIDVVAKGWPHCLRVVAAVAVLVSEAVKIIQGRDLTVW---TSHDVNGILTAKGDLW-LSDNRLLKYQALLLEGPVLRLRTCATLNPATFLPDNEE----KIEHNCQQVIAQTYAARGDLLEVPLTDPDLNLYTDGSSFVEK---GLRKAGYAVVSD-------NGILESNPLTPGTSAQLAELIALTRALELGEG-K--RVNIYTDSKYAYLVLHAHAAIWREREFLTSEGTPIKHQEAIRRLLLAVQ-KPKEVAVLHCRGHQKGK-EREIEGNRQADIEAKRAARR----------
>PABL_B
----------------RAINVSPVKIKLKEGAQPIRKKKYPLKREALEXIQPVLVQFLQYGLIR--PCQSSYNTPILPVVKKPHSHEY--RFVQDLRAI--NDIVEDIHPTVANPYTMFTSLPG-DHEWFTVLDLKD-AFFCIPVDVESQLLFAFEWTDPET-AXQFQYCWTVLPQGFKNSPXIFGEALAQ------------DLRSLQLE--NGVLLQYV----------------------------------------DDLLISSPSE-QECQDNTIKTLNHLAACGYKVSSKKAQVCKQTVEYLGFLLQ---KGTRALTVERRNAIASIA-TPTTRKQLRGFLGM----XGFCXIWIPNYGLI-VKXLYXLLKGAD----HDPFDWEARHQHSFEQLKCKLSVSPALGLPNPHKPFQLYVHE-RLGLALGVLTQRLXE----VLQPVXYFSKQLXTVAKGWPPCLRAVAATCLLLKEAEKLTLGQPVTXY---VPYQVLVLLEQKRGYW-LTAGXLGRYQAXXLDDPTVKLQTTGTLNPAXLLPPTGEP--EEPMHNCLEVXDQVFSSHLDLKDAALPCADWXLFVDGSSLVTD---RKRNAXYAVVTS-------SEVTEARTLPAGTXAQKAELIALMRALQLSQG-K--SANXHTDSKYAFMIVHAHGAIWRERGLLKADNTEVKYAKQVLELLEAIK-APREIAVMHCPGHQRSN-SEVARGNAFADRTARHLASA----------
>HERV-E
-AKRWPRVWAEANPPGLAVNQAPVLIEVKPGVQPVRQKQYPVLREALEGIQVHLKCLRTFRIIV--PCQSPWNTPLLPV-PKPGTKDY--RPVQDLRLV--NQATVTLHPTVPNLYTLLGLLPA-EDSWFTCLDLKD-AFFSIRLAPERQKLFAFQWEDPES-GVTTQYTWTQLPQRFKNSPTIFGEALAR------------DLQKFPTRDLGCVLLQYV----------------------------------------DDLLLGHPTA-VGCAKGTDALLRHLEDCGYKVSRKKAQICRQQVCYLGFTIQ---QGEHSLGSERKQVICNLP-EPKTRRQVREFLGA----VGFCRLWIPNFAVL-AKPLYEVTKAGD----QEPFEWGSQQQQAFHELKERLMSVPALGLPDLTKPFTLYVSE-SEKMAVGVLTQTVGP----WPRPVTYLSKQLDGVSKGWPPCLRALAATALLVQEADKLILGQNLNIK---DPHAVVTLMNTRGHHW-LTNARLTKYQSLLCENPHITIEVCNTLNPATLLPVLEI---P-VEHDCVEVLDSVYSGRS---------VDWELYVDGSSFVNPQ--EERCAGYAVVTL-------DTVAEARSFPQGTSTQKAELIALIRALELSEG-K--TVNIYTDSXYVFLTLQVHGALCKEKGLLNSGGKDIKYQQEILQLLEAVW-KPHKVAVIHCGGHQXAS-TLVGLGNSCTDLEAQKAAS-----------
>HERV3
LLSKIPGVWAEDNPPGLAVNQAPVVVELKPGATPVRVRQYPLPREAVRGIRKHLERLXKHGILV--RCQSPWNTPLLPV-RKPGSGEY--RPVQDLRAV--NQATVTIHPVVPNPYTLMGLIPA-SAAWFTXLDLKD-AFFCLRLAPISQPIFAFQWDDXVT-GTXXQLTWTRLPQGFKNSPTIFGEALAS------------DLKAYTPPNDNCALLQYV----------------------------------------DDLLLAAPTR-EDCYQGTQDLLHLLWKAGYKVSRKKAQICXEXVKYLGFIVS---QGERRLGSERKQAVCALP-TPTTRRQIREFLGA----AGFCRIWIPNFSLM-AKPLYEATKRGE----KEPLLWEADQEKAFKQIKEALTQAPALGLPDXTKPFFLYVHE-RKGMAIGVLTQVIGS----WHRPVAYLSRQLDSVALGWPPCLKALAATALLAQEANKLTLGQQLTIR---VRRTRL*----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>HERV-T
----FPRVWAESNPPGLAKHHPPVVVELLATAIPVQVKQYPASQQAREGINPHIQRLLQAGILT--PCQSAWNTPFLPV-QKPGTNDY--RPVQDLREV--NKRTVTVHPTVPNPYTLLSLLPP-EHTVCTVLDLKD-AFFAIPLAPKSQPIFAFEWTDPRS-GDTTQLTWTQLPQGFKNSPTLFGEALQQ------------DLNTFRASHPNCTLLQYV----------------------------------------DDILIATETM-DGCLQHTRDLLYLLQELRYGVSAKKAQLCLPRVSYLGYEIN---KGKRALTSARKEAIPRIP-TPTTKRQVREXLGA----MGYCRXWILRFAEI-AKPLYTATRGN------GPLIWTDTEEQAFQNLKKXLTXAPALALXNISKPFHLFVHE-SQGVAKGVLTQTLGP----WRRPVAYLSKRLDPVAXGWPSCLRAIVATASLVQEADKLTLGQNLTLT---APHAVETLLRSAXGKW-MSNARILQYQSLLLDQPRLTFSPTRCLNXAXLLXDPDS---XTPVHDCQELLETTETGXXDLQDVPLKKADATVFTDGSSFLEQ---GVRKAGAAVTTE-------TDVLWSQVLPASTSAQKAELIALTQALRWXKD-K--RINIYTDSRYAFATVHVHGAIYQERGLLTSAGKIIKNKEEILALLEAVW-LPQQVAVIHCKGHQKEN-TAVARGNQKXDSAAREAARPSV--------
>FeLV
---------------------APVLIQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILK--PCQSPWNTPLLPV-KKPGTEDY--RPVQDLREV--NKRVEDIHPTVPNPYNLLSTLPP-SHPWYTVLDLKD-AFFCLRLHSESQLLFAFEWRDPEI-GLSGQLTWTRLPQGFKNSPTLFDEALHS------------DLADFRVRYPALVLLQYV----------------------------------------DDLLLAAATR-TECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGYSLK---DGQRWLTKARKEAILSIP-VPKNSRQVREFLGT----AGYCRLWIPGFAEL-AAPLYPLTRPG------TLFQWGTEQQLAFEDIKKALLSSPALGLPDITKPFELFIDE-NSGFAKGVLVQKLGP----WKRPVAYLSKKLDTVASGWPPCLRMVAAIAILVKDAGKLTLGQPLTIL---TSHPVEALVRQPPNKW-LSNARMTHYQAMLLDAERVHFGPTVSLNPATLLPLPSG---G-NHHDCLQILAETHGTRPDLTDQPLPDADLTWYTDGSSFIRN---GEREAGAAVTTE-------SEVIWAAPLPPGTSAQRAELIALTQALKMAEG-K--KLTVYTDSRYAFATTHVHGEIYRRRGLLTSEGKEIKNKNEILALLEALF-LPKRLSIIHCPGHQKGD-SPQAKGNRLADDTAKKAATETHSSLTVLPT
>AKV
WLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILV--PCQSPWNTPLLPV-KKPGTNDY--RPVQDLREV--NKRVEDIHPTVPNPYNLLSGLPP-SHRWYTVLDLKD-AFFCLRLHPTSQPLFAFEWRDPGM-GISGQLTWTRLPQGFKNSPTLFDEALHR------------DLADFRIQHPDLILLQYV----------------------------------------DDILLAATSE-LDCQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLK---EGQRWLTEARKETVMGQP-TPKTPRQLREFLGT----AGFCRLWIPGFAEM-AAPLYPLTKTG------TLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDE-KQGYAKGVLTQKLGP----WRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLRKDAGKLTMGQPLVIL---APHAVEALVKQPPDRW-LSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEE---G-APHDCLEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQE---GQRKAGAAVTTE-------TEVIWARALPAGTSAQRAELIALTQALKMAEG-K--RLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKSEILALLKALF-LPKRLSIIHCLGHQKGD-SAEARGNRLADQAAREAAIK----------
>PERV-C
WLEQFPQAWAETAGMGLAKQVPPQVIQLKASATPVSVRQYPLSKEAQEGIRPHVQRLIQQGILV--PVQSPWNTPLLPV-RKPGTNDY--RPVQDLREV--NKRVQDIHPTVPNPYNLLCALPP-QRSWYTVLDLKD-AFFCLRLHPTSQPLFAFEWRDPGT-GRTGQLTWTRLPQGFKNSPTIFDEALHR------------DLANFRIQHPQVTLLQYV----------------------------------------DDLLLAGATK-QDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLR---DGQRWLTEARKKTVVQIP-APTTAKQMREFLGT----AGFCRLWIPGFATL-AAPLYPLTKEK------GEFSWAPEHQKAFDAIKKALLSAPALALPDVTKPFTLYVDE-RKGVARGVLTQTLGP----WRRPVAYLSKKLDPVASGWPICLKAIAAVAILVKDADKLTLGQNITVI---APHALENIVRQPPDRW-MTNARMTHYQSLLL-TERVTFAPPAALNPATLLPEETD---EPVTHDCHQLLIEETGVRKDLTDIPLTGEVLTWFTDGSSYVVE---GKRMAGAAVVDG-------TRTIWASSLPEGTSAQKAELMALTQALRLAEG-K--SINIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEAVH-LPKRLAIIHCPGHQKAK-DLISRGNQMADRVAKQAAQG----------
>KoRV
-----PMVWAEKAGMGLANQVPPVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILV--PCQSPWNTPLLPV-KKPGTNDY--RPVQDLREV--NKRVQDIHPTVPNPYNLLSSLPP-SHTWYSVLDLKD-AFFCLKLHPNSQPLFAFEWRDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHR------------DLASFRALNPQVVMLQYV----------------------------------------DDLLVAAPTY-RDCKEGTRRLLQELSKLGYRVSAKKAQLCREEVTYLGYLLK---GGKRWLTPARKATVMKIP-TPTTPRQVREFLGT----AGFCRLWIPGFASL-AAPLYPLTREK------VPFTWTEAHQEAFGRIKEALLSAPALALPDLTKPFALYVDE-KEGVARGVLTQTLGP----WRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVI---APHNLESIVRQPPDRW-MTNARMTHYQSLLL-NERVSFAPPAILNPATLLPVESD---DTPIHICSEILAEETGTRPDLRDQPLPG-VPAWYTDGSSFIMD---GRRQAGAAIVDN-------KRTVWASNLPEGTSAQKAELIALTQALRLAEG-K--SINIYTDSRYAFATAHVHGAIYKQRGLLTSAGKDIKNKEEILALLEAIH-LPKRVAIIHCPGHQRGT-DPVATGNRKADEAAKQAAQSTRILTETTKN
>GALV
------TVWAERAGMGLANQVPPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLV--PCRSPWNTPLLPV-KKPGTNDY--RPVQDLREI--NKRVQDIHPTVPNPYNLLSSLPP-SYTWYSVLDLKD-AFFCLRLHPNSQPLFAFEWKDPEK-GNTGQLTWTRLPQGFKNSPTLFDEALHR------------DLAPFRALNPQVVLLQYV----------------------------------------DDLLVAAPTY-EDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLK---EGKRWLTPARKATVMKIP-VPTTPRQVREFLGT----AGFCRLWIPGFASL-AAPLYPLTKES------IPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDE-RAGVARGVLTQTLGP----WRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVI---ASHSLESIVRQPPDRW-MTNARMTHYQSLLL-NERVSFAPPAVLNPATLLPVESE---ATPVHRCSEILAEETGTRRDLEDQPLPG-VPTWYTDGSSFITE---GKRRAGAPIVDG-------KRTVWASSLPEGTSAQKAELVALTQALRLAEG-K--NINIYTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIH-LPRRVAIIHCPGHQRGS-NPVATGNRRADEAAKQAALSTRVLAGTT--
>BIV
------------------------PLPVKVRGPGPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVI-KKKGTGRW--RMLMDFREL--NKITVKGQEFSTGLPY-PPGIKE-CEH-LTAIDIKD-AYFTIPLHEDFRPFTAFSVVPVNREGPIERFQWNVLPQGWVCSPAIYQTTTQK------------IIENIKKSHPDVMLYQYM----------------------------------------DDLLIGSNR--DDHKQIVQEIRDKLGSYGFKTPDEKVQEE--RVKWIGFELT-----PKKWRFQPRQ-LKI-K-NPLTVNELQQLVGN----CVWVQPEV---KIP-LYPLTDLLRDKT--NLQEKIQLTPEAIKCVEEFNLKLKDPEWKDRIREGAELVIKIQM-VPRGIVFDLLQDG---------NPIWGGVKGL-NYDHSNKIKKILRTMNELNRTVVIMTGREA-SFLLPGSSEDWEAALQKEESL---------T-----QIFPVKFYR-----------------------HSCRW---------TSICGPVREN-LTTYYTDGGKK--G-----KTAAAVYWCE----GRTK------SKVFPGTNQQAELKAICMALLDGP--P--KMNIITDSRYAYEGMREEPETWAR-------EG------IWLEIAKILP-FKQYVGVGWVPAHKGIG------GNTEADEGVKKALEQM---------
>EIAV
--------------------IKFRKIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVI-KKR-SGKW--RLLQDLREL--NKTVQVGTEISRGLPH-PGGLIK-CKH-MTVLDIGD-AYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLSPYIYQKTLQE------------ILQPFRERYPEVQLYQYM----------------------------------------DDLFMGSNGSKKQHKELIIELRAILLEKGFETPDDKLQEV-PPYSWLGYQLC-----PENWKVQKMQ-LDMV--KNPTLNDVQKLMGN----ITWMSSGIP--GLT-VKHIAATTKGCL--ELNQKVIWTEEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQ---------GILWAGKKIMKANKGWSTVKNLMLLLQHVATESITRVGKCP-TFKVPFTKEQVMWEMQKGW-Y---------Y-----SWLPEIVYTH----------Q---------VV-HDDW--------RMKLVEEPTS--GITIYTDGGKQ--N-----GEGIAAYVTS----NGRTKQ----KRLGPVTHQVAERMAIQMALEDTRD-K--QVNIVTDSYYCWKNITEGLGLEGP-------QS------PWWPIIQNIR-EKEIVYFAWVPGHKGIY------GNQLADEAAKIKEEIMLAYQ-----
>Visna_Maedi_virus
-------------------KIPSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCI-KKK-SGKW--RMLIDFREL--NKQTEDLAEAQLGLPH-PGGLQR-KKH-VTILDIGD-AYFTIPLYEPYRQYTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQK------------ILRGWIEEHPMIQFGIYM----------------------------------------DDIYIGSDLGLEEHRGIVNELASYIAQYGFMLPEDKRQEG-YPAKWLGFELH-----PEKWKFQKHT-LPEITEGPITLNKLQKLVGD----LVWRQSLI---GKS-IPNILKLMEGDR--ALQSERYIESIHVREWEACRQKLKE-MEGNYYDEEKDIYGQLDW-GNKAIEYIVFQEKG--------KPLWVNVVHSI--KNLSQAQQIIKAAQKLTQEVIIRTGKIP-WILLPGREEDWILELQMGN-----------I-----NWMPSF--WS----------C---------YKGSVRW-------KKRNVIAEVVP--GPTYYTDGGKK--N-----GRGSLGYITS----TGEKFR----IHE-EGTNQQLELRAIEEACKQGP--E--KMNIVTDSRYAYEFMLRNWDEEVIR------NP------IQARIMELVH-NKEKIGVHWVPGHKGIP------QNEEIDRYISEIFLAKE--------
>FIV
--------------------IPVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEREGKVKRADPNNPWNTPVFAI-KKK-SGKW--RMLIDFREL--NKLTEKGAEVQLGLPH-PAGLQI-KKQ-VTVLDIGD-AYFTIPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDN------------IIQPFIRQNPQLDIYQYM----------------------------------------DDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEE-PPYTWMGYELH-----PLTWTIQQKQ-LD-IP-EQPTLNELQKLAGK----INWASQAIP--DLS-IKALTNMMRGNQ--NLNSTRQWTKEARLEVQKAKKAIEEQVQLGYYDPSKELYAKLSLVGPHQISYQVYQKDP-------EKILWYGKMSRQKKKAENTCDIALRACYKIREESIIRIGKEP-RYEIPTSREAWESNLINSPYL---------K-----APPPEVEYIH----------A---------ALNIKRA--------LSMIKDAPIPG-AETWYIDGGRKL-G-----KAAKAAYWTD----TGKWQV----MELE-GSNQKAEIQALLLALKAGS--E--EMNIITDSQYVINIILQQPDM--M-------EG------IWQEVLEELE-KKTAIFIDWVPGHKGIP------GNEEVDKLCQT--------------
>HIV-1
--------------------------------DGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAI-KKKDSTKW--RKLVDFREL--NKRTQDFWEVQLGIPH-PAGLKK-KKS-VTVLDVGD-AYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTK------------ILEPFRKQNPDIVIYQYM----------------------------------------DDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKE-PPFLWMGYELH-----PDKWTVQPIV-LPE-K-DSWTVNDIQKLVGK----LNWASQIYP--GIK-VRQLCKLLRGTK--ALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQE-P-------FKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTP-KFKLPIQKETWETWWTEYW-Q---------A-----TWIPEWEFVN----------T---------PP-LVKL--------WYQLEKEPIVG-AETFYVDGAANRET-----KLGKAGYVTN----RGRQKV----VTLTDTTNQKTELQAIYLALQDSG--L--EVNIVTDSQYALGIIQAQPDQ--SE------SE------LVNQIIEQLI-KKEKVYLAWVPAHKGIG------GNEQVDKLVSAGIRKVL--------
>SIVagm
--------------------IEETKVQLKEGKDGPKLKQWPLSREKIEALTEICKQMEEEGKLSRIGGENPYNTPVFAI-KKKDKTQW--RMLVDFREL--NKATQDFFEVQLGIPH-PAGLQK-KKQ-ITVIDIGD-AYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQNTAAN------------ILEEIKRHTPGLEIVQYM----------------------------------------DDLWLASDHDETRHNQQVDIVRKMLLEKGLETPDKKVQRE-PPWEWMGYKLH-----PNKWTINKIE-LPPLE-GEWTVNKIQKVVGV----LNWASQIYP--GIK-TKHTCAMLRGKK--NLLEEIVWTEEAEAEYKNNQGIVQETQEGTYYDPLKELIATVQKQGEGQWTYQFTQE-G--------AVLKVGRYAKQRETHTNDLRTLAHLVQKICKEALTIWGRLP-RVQLPVDKKTWDMWWQDYW-Q---------V-----SWIPEWEFVS----------T---------PL-LVKL--------WYSLVKEPIKG-EDVYYVDGAASKVT-----KLGKAGYLSE----RGKSRI----RELENTTNQQAELTAVKMALEDSG--E--NVNIVTDSQYVMNILTACPQE--SN------SP------LVEQIIQALM-KKRQVYLQWVPAHKGIG------GNTEIDKLVSKGIRQ----------
>BLV
---------------------------------PPEVPQFPLNLERLQALQDLVHRSLEAGYIS--PWDGPGNNPVFPV-RKP-NGTW--RFVHDLRAT--NALTKPIPALSPGPPD-LTAIPT-HLPHIICLDLKD-AFFQIPVEDRFRSYFAFTLPTPGGLQPHRRFAWRVLPQGFINSPALFERALQE------------PLRQVSAAFSQSLLVSYM----------------------------------------DDILIASPTE-EQRSQCYQALAARLRDLGFQVASEKTRQTPSPVPFLGQMVH-----NQIVTYQSLPTLQI-S-SPISLHQLQAVLGD----LQWVSRGTPTTRRP-LQLLYSSLKGID--DPRAIIQLSPEQLQGIAELRQALSH-NARSRYNEQEPLLAYVHL-TRAGSTLVLFQKGAQ------FPLAYFQTPLT-DNQASPWGLLLLLGCQYLQTQALSSYAKPILKYYHNLPKTSLDNWIQSSEDP---------RVQELLQLWPQISSQGIQPPGPWKTLI---------TRAEVFLT--------PQFSPEPIPA-ALCLFSDGATG--------RG-AYCLWKD----HLLD----FQAVPAPESAQKGELAGLLAGLAAAPP-E--PLNIWVDSKYLYSLLRTLVLGAWLQ------PD--PVPSYALLYKSLLR--HPAIFVGHVRSHSSAS-HPIASLNNYVDQLLPLETPEQ---------
>HTLV-1
---------------------------------PPEISQFPLNPERLQALQHLVRKALEAGHIE--PYTGPGNNPVFPV-KKA-NGTW--RFIHDLRAT--NSLTIDLSSSSPGPPD-LSSLPT-TLAHLQTIDLKD-AFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAH------------ILQPIRQAFPQCTILQYM----------------------------------------DDILLASPSH-ADLQLLSEATMASLISHGLPVSENKTQQTPGTIKFLGQIIS-----PNHLTYDAVPKVPI-R-SRWALPELQALLGE----IQWVSKGTPTLRQP-LHSLYCALQRHT--DPRDQIYLNPSQVQSLVQLRQALSQ-NCRSRLVQTLPLLGAIML-TLTGTTTVVFQSKQQ------WPLVWLHAPLP-HTSQCPWGQLLASAVLLLDKYTLQSYGLLCQTIHHNISTQTFNQFIQTSDHP---------SVPILLHHSHRFKNLGAQTGELWNTFL---------KTTAPLAPV-KALMPVFTLSPVIINT-APCLFSDGSTS--------QA-AYILWDK----HILSQRS-FPLPPPHKSAQRAELLGLLHGLSSARSWR--CLNIFLDSKYLYHYLRTLALGTFQG------RS--SQAPFQALLPRLLS--RKVVYLHHVRSHTNLP-DPISRLNALTDALLITPVLQL---------
>STLV-6
----------------------------------PRSSTISVKPERLQALTDLVSKALEAKYIE--PYQGPGNNPIFPV-KKP-NGKW--RFIHDLRAT--NCLTKTLTSPSPGPPD-LTSLPQ-GLPHLRTIDLTD-AFFQIPLPVAFQPYFAFTLPQPNNHGPGARYSWKVLPQGFKNSPTLFEQQLSH------------ILTPVRQAFPKSIVIQYM----------------------------------------DDILLASPTL-EESIVLAQEITNALAQEGLPMSTEKTQSTPGPIHFLGQTIS-----KKYITYETLPTIHV-K-PNWTLTELQSTLGE----LQWVSKGTPTLRSS-LHQLYTALRGHH--DPRDTIQLTPPQLQALNTLQKALTH-NCRSRIVSNLPILALIML-RPTGTTAVLFQTKQK------WPLVWLHTPHP-ATSLRLWGQLLANAIITLDKYSLQHYGQVCKSFHHNISNQALTHYLHTSDQS---------SVAILLQHSHRFHNLGAQPSGPWKGLL---------QVPQIFQNV-ATLSPPFTISPVVINH-APCLFSDGSNS--------QA-AFTIWDK----KIIHQQ--VLPLPTASSAQAGELFALLAALRECKPWS--SLNIFLDSKFLVGQLRRLALGAFIG------PS--TQCDLHSQLLPLLY--NKTIYVHHVRSHTLLQ-DPISRLNEATDALMLAPLLPL---------
>STLV-2
---------------------------------PPQIDQFPFKPERLQALTDLVSKALEASYIE--PYSGPGNNPVFPV-KKP-NGKW--RFIHDLRAT--NAITTTLASPSPGPPD-LTSLST-ALPYLQTIDLTD-AFFQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLFEQQLAA------------VLSPIRKTFPMSTIIQYM----------------------------------------DDILLASPTQ-EELQQLSKMTLQALVTHGLPVSQEKTQQTPGQIRFLGQVIS-----PNHITYETTPTIPI-K-SQWTLTELQTVLGE----IQWVSKGTPILRKH-LQCLYSALRGYQ--DPRAHLLLQKQQLHALHAIQQALQH-NCRSRLNPALPILGLISL-SSSGTTSVLFQARQR------WPLVWLHTPHP-PTSLCPWGHLLACTILTLDKYSLQHYGQLCQSFHHNMSNTALHDFVKNSPHP---------SVGILIHHMGRFHNLGSQPSGPWRTLL---------HLPALLQEP-RLLRPLFTLSPVVLTT-APCLFSDGSSQ--------KA-AYVLWDQ----TILHHDSVTLPPHGSNSAQKGELLALLSGIRAAKSWP--SLNIFLDSKYLIKYLHSLAIGAFLG------TS--THQSLYAHLPTLLH--NKVIYLHHIRSHTNLP-DPISTLNEYTDSLIIAPLIP----------
>HERV-K22
----------------------PLPLTWLSQ-DPIWVEQWPLKGEKLQRAHELVEEQLKAGHIE--PSNSPWNSPIFII-PKK-SGKW--RLLHDLRAI--NANLQPMGPLQQGLPS-PAAIPQ-DWP-IIVIDLKD-CFYTIPLAEQDREKFAFTIPAINNERPACXFHWKVLPQGMLNSPTMCQYHVNQ------------ALLPSRKEFPNCKIIHFM----------------------------------------DDILPAAPTE-PVLLNLYTSVVKNTQLRGLIIAPEKVQMS-SPWKYLGYILT-----SRSVRPQKVK-LNT-S-NLHTLNDYQKLLGD----INWLCPTLGITTYK-LQNLFSILKGNT--ALDSPRYLTPAAKREIEEIEQAISQ-RQLDRIDPXYSVQLFVFP-TKHSPTGLIGQMAP-----GLRFLEWIFLPHTGTKTLSPYIQLISKVIYSGHRRCNQLLGYDPDIIRIPLSKKQFEAVLPLSLDL---------QIAL-SDYAGHIEHA--LPADKLLQFL---------SHTPVVLP--------TKIVHSPIPN-ALTLFTDGSGK--------HGKAAIWWRP----HN------SLTHSGFTSTQRAEVGALILALETFSA-Q--PINIVSDSAYSVYLLQNLETALIKS------TLEPTLCALFLXLQQLLDQRTHPIFITHIRAHSSLP-GPLAYGNDQADLQVM---------------
>HERV-K9
---------------------EPIPLKWLTD-KPIWIEQWPLSKEKLEALEKLVTEQLENGHIA--PTFSPWNSPVFVI-KKK-SGKW--RMLTDLRAI--NSVIQPMGALQPGLPS-PAIIPK-NWP-LIVIDLKD-CFFTIPLAEQDCEWFAFTIPAVNNLQPAKRFHWKVLPQGMLNSPTICQTYVGQ------------AIEPTRKKFSQCYIIHYM----------------------------------------DDILCAAPTR-EILLQCYDHLQNSISHAGLIIAPDKIQTT-TPYSYLGTLVN-----DTTIVPQKVT-ICR-D-QLKTLNDFQKLLGD----INWIRPALGIPTYA-MSNLFSILRGDP--SLTSPRQLTKEAEAELQLIEKQVHK-AQINRIDPEKTLDLLIFS-TQHSPTGVIVQE--------QDLVEWLFLPHTNSRTLTPYLDQIATMIGNGRTRIVKLHGYDPGKIIVPLTKAQIQQAFINSLTW---------QTHL-ADFVGILDNH--FPKMKLFQFL---------KLTNWILP--------KITKFKPIEG-AENVFTDGSSN----------GKASYSGS----KS------KVFQTPYTSAQKAELVAVIEVLTAFD--M--PINVISDSSYVVHSTQLIENAQLRF------HTDEQLMTLFTQLQTAVRSRMHPFYITHIRAHTPLP-GPLTEGNQMADRLVANAI------------
>HERV-K
----------------------PIPLTWKTE-KPVWVNQWPLPKQKLEALHLLANEQLEKGHIE--PSFSPWNSPVFVI-QKK-SGKW--RMLTDLRAV--NAVIQPMGPLQPGLPS-PAMIPK-DWP-LIIIDLKD-CFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGR------------ALQPVREKFSDCYIIHYI----------------------------------------DDILCAAETK-DKLIDCYTFLQAEVANAGLAIASDKIQTS-TPFHYLGMQIE-----NRKIKPQKIE-IRK-D-TLKTLNDFQKLLGD----INWIRPTLGIPTYA-MSNLFSILRGDS--DLNSKRMLTPEATKEIKLVEEKIQS-AQINRIDPLAPLQLLIFA-TAHSPTGIIIQN--------TDLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAW---------XIGL-ANFVGIIDNH--YPKTKIFQFL---------KLTTWILP--------KITRREPLEN-ALTVFTDGSSN----------GKAAYTGP----KE------RVIKTPYQSAQRAELVAVITVLQDFD--Q--PINIISDSAYVVQATRDVETALIKY------SMDDQLNQLFNLLQQTVRKRNFPFYITHIRAHTNLP-GPLTKANEQADLLVSSALI-----------
>MMTV
-----------------------DQISWKSD-QPVWLNQWPLKQEKLQALQQLVTEQLQLGHLE--ESNSPWNTPVFVI-KKK-SGKW--RLLQDLRAV--NATMHDMGALQPGLPS-PVAVPK-GWE-IIIIDLQD-CFFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFVDK------------AILTVRDKYQDSYIVHYM----------------------------------------DDILLAHPSR-SIVDEILTSMIQALNKHGLVVSTEKIQKY-DNLKYLGTHIQ-----GDSVSYQKLQ-IRT-D-KLRTLNDFQKLLGN----INWIRPFLKLTTGE-LKPLFEILNGDS--NPISTRKLTPEACKALQLMNERLST-ARVKRLDLSQPWSLCILK-TEYTPTACLWQD---------GVVEWIHLPHISPKVITPYDIFCTQLIIKGRHRSKELFSKDPDYIVVPYTKVQFDLLLQEKEDW---------PISL-LGFLGEVHFH--LPKDPLLTFT---------LQTAIIFP--------HMTSTTPLEK-GIVIFTDGSAN--------GRSVTYIQGR----EP------IIKENTQNTAQQAEIVAVITAFEEVS--Q--PFNLYTDSKYVTGLFPEIETATLSP--------RTKIYTELKHLQRLIHKRQEKFYIGHIRGHTGLP-GPLAQGNAYADSLTRILTA-----------
>JSRV
--------------------------------------------------------------------------------------------------------MMHMGALQPGLPT-PSAIPD-KSY-IIVIDLKD-CFYTIPLAPQDCKRFAFSLPSVNFKEPMQRYQWRVLPQGMTNSPTLCQKFVAT------------AIAPVRQRFPQLYLVHYM----------------------------------------DDILLAHTDE-HLLYQAFSILKQHLSLNGLVIADEKIQTH-FPYNYLGFSLY-----PRVYNTQLVK-LQT-D-HLKTLNDFQKLLGD----INWIRPYLKLPTYT-LQPLFDILKGDS--DPASPRTLSLEGRTALQSIEEAIRQ-QQITYCDYQRSWGLYILP-TPRAPTGVLYQD---------KPLRWIYLSATPTKHLLPYYELVAKIIAKGRHEAIQYFGMEPPFICVPYALEQQDWLFQFSDNW---------SIAF-ANYPGQITHH--YPSDKLLQFA---------SSHAFIFP--------KIVRRQPIPE-ATLIFTDGSSN--------GTAALIINHQ-----T------YYAQTSFSSAQVVELFAVHQALLTVP--T--SFNLFTDSSYVVGALQMIETVPIIG------TTSPEVLNLFTLIQQVLHCRQHPCFFGHIRAHSTLP-GALVQGNHTADVLTKQVFFQSAIDAA----
>SRV4
------------------------PIIWKSD-TPVWVDQWPLTKEKLTAAQQLVQEQLQAGHIV--ESNSPWNTPIFVI-KKK-SGKW--RLLQDLRAV--NATMILMGALQPGLPS-PVAIPQ-NYL-KIIIDLKD-CFFTIPLHPNDQKRFAFSLPSTNFKEPMKRYQWKVLPQGMANSPTLCQKFVAM------------AIQTVRDTWKQIYIIHYM----------------------------------------DDILLAGADG-QQVLQCFAQLKEKLVIAGLHIAPEKLQLH-DPYTYLGFQLN-----GPKITTQKAV-IRK-D-KLQTLNDYQKLLGD----INWLRPYLKLTTGD-LRPLFDILKGDP--NPNSPRSLSDEALIALDKVETAIAE-QFVTHINYSQPLILLVFN-TALTPTGLFWQS---------NPLMWIHSHASPKRVLLPYYDAIADLIILGRGHSRTYFGIEPSTIIQPYSKSQIDWLMQNTETW---------PIAC-ASYAGKIDNH--YPPDKLLQFC---------RLHTFIFP--------KIISKSPLDN-ALLVFTDGSST--------GIAAYTFADS-----I------IKFQTKFSSAQLVELQAFIAVLSAFPN-Q--PLNIYTDSAYLAHSIPLLETVAQIK------HI-SDTAQLFLQCQQLIHNRSTPIYIGHVRAHSGLP-GPIAQGNQLADLATKTIAFN----------
>SMRV
--------------------------------------------------------------------------------------------------------MVPMGALQPGLPS-PVAIPL-NYH-KIVIDLKD-CFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAA------------AIAPVRSQWPEAYILHYM----------------------------------------DDILLACDSA-EAAKACYAHIISCLTSYGLKIAPDKVQVS-EPFSYLGFELH-----HQQVFTPRVC-LKT-D-HLKTLNDFQKLLGD----IQWLRPYLKLPTSA-LVPLNNILKGDP--NPLSVRALTPEAKQSLALINKAIQN-QSVQQISYNLPLVLLLLP-TPHTPTAVFWQPNGTDPTKNGSPLLWLHLPASPSKVLLTYPSLLAMLIIKGRYTGRQLFGRDPHSIIIPYTQDQLTWLLQTSDEW---------AIAL-SSFTGDIDNH--YPSDPVIQFA---------KLHQFIFP--------KITKCAPIPQ-ATLVFTDGSSN--------GIAAYVIDNQ-----P------ISIKSPYLSAQLVELYAILQVFTVLAH-Q--PFNLYTDSAYIAQSVPLLETVPFIK------SS-TNATPLFSKLQQLILNRQHPFFIGHLRAHLNLP-GPLAEGNALADAATQIFPII----------
>DrEV
--------------------------------------------------------------------------------------------MQDLRAV--NKIMVPMGALQPGLPS-PVAIPA-NYY-KIVIDLKD-CFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAA------------AIAPVRKQWPQAYILHYM----------------------------------------DDILLACPDG-DTARACHAHMITCLANRGLQIAPDKVQTS-DPYSYLGFELC-----HQQVLTPRIS-LRT-D-NLKTLNDFQKLLGD----VQWLRPYLKLPTEA-LLPLNNILKGDS--DPLSPRALTPEAEHSLTIINKAIQR-QSAQQISYNLPLVFILFP-TAHTPTGVFWQTKTTDLTKNGHPLLWVHLPASPSRVLLTYPSLLATLIIKGRSTSRQLFGKDPDSIITPYSHDQTNWLLQTSDEW---------AIAL-SSFTGNLDNH--YPSDPLVQFA---------KTHQFIFS--------KLTKAAPIPK-ATLVFTDGSSN--------GTAAYIINKQ-----T------FTVKSPYSSAQLVELFAILEVFTSLAN-Q--PFNLYTDSAYIAQSVPLLETVPFIK------PS-TNATPLFTKLQNLILQRQHPFYIGHLRAHLDLP-GPLTEGNALADVATXTICP-----------
>MgLDV
-----------------------IPLEWHTD-VPVWIEQWPLTAQKLDAVQNIIQDLLKDGRII--PSRSQWNSPIFVI-QKKDKSKF--RMLHDLRAV--NALIKDWGALQPGTPW-PGAIPS-EWP-VIAMDISD-CFFSIPLAERDSERFAFTIPSPNLREPAKRYQWTVLPQGMKNSPYICQQVVAE------------VIRPIRERFRDAVIIHYM----------------------------------------DDILIAAAEE-RQTEVIFEAVKTTCHEKGLKINEAKTQRA-PEVSYLGWRVM-----ETGIAPLTVQ-L-P-E-TVTNLVQLQRLLGI----IQWLKPILSLRPEQ-LQVFYDLLKGKT--RPEEPCRLTEEAQQELRNIQQRLQA-SCVGRWRSDLPITLFVCT-TAAGGIGLIAQQQDQ----RIQPLYWLSST-RLTRAWTSASRVLVLLIRQGSQICAQYWGQLPDKVMIPMTTEEWELFSSANDYA---------IASL-VEIGPRICPA--AAD-PIWPS----------LSYLRPVA--------PPITDTPLVG--RTVFTDASSQ--------TAMAVAVWQE----NGRWKK--VTECSPGSSVQQLEARAVQLASDAFPT-E--ALNVVTDSLYVARLVSRMATPGWPD------LA------SPW-LYNSLSRRTAPLFICHVQAHQSLE-GL-HTGNDAADRAAKG-LWPL---------
>ALV
-----------------------IPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIE--PSLSCWNTPVFVI-RKA-SGSY--RLLHDLRAV--NAKLVPFGAVQQGAPV-LSALPR-GWP-LMVLDLKD-CFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQ------------VLEPLRLKHPSLRMLHYM----------------------------------------DDLLLAASSH-DGLEAAGEEVISTLERAGFTISPDKIQRE-PGVQYLGYKLG-----STYVAPVGLV-A-E-P-RIATLWDVQKLVGS----LQWLRPALGIPPRL-MGPFYEQLRGS---DPNEAREWNLDMKMAWREIVQLSTT-AALERWDPALPLEGAVAR-CEQGAIGVLGQGLST----HPRPCLWLFST-QPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGI------------LLAL-RGFAGKIRSS--DTP-SIFDIA---------RPLHVSLK--------VRVTDHPVPG--PTAFTDASSS--------THKGVVVWRE----GPRWEI--KEIADLGASVQQLEARAVAMALLLWPT-T--PTNVVTDSAFVAKMLLKMGQEGVPS------TA------AAFILEDALSQRSAMAAVLHVRSHSEVP-GFFTEGNDVADSQATFQAYP----------
>RSV
-----------------------IPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIE--PSLSCWNTPVFVI-RKA-SGSY--RLLHDLRAV--NAKLVPFGAVQQGAPV-LSALPR-GWP-LMVLDLKD-CFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQ------------VLEPLRLKHPSLCMLHYM----------------------------------------DDLLLAASSH-DGLEAAGEEVISTLERAGFTISPDKVQRE-PGVQYLGYKLG-----STYVAPVGLV-A-E-P-RIATLWDVQKLVGS----LQWLRPALGIPPRL-MGPFYEQLRGS---DPNEAREWNLDMKMAWREIVRLSTT-AALERWDPALPLEGAVAR-CEQGAIGVLGQGLST----HPRPCLWLFST-QPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLPEGI------------LLAL-KGFAGKIRSS--DTP-SIFDIA---------RPLHVSLK--------VRVTDHPVPG--PTVFTDASSS--------THKGVVVWRE----GPRWEI--KEIADLGASVQQLEARAVAMALLLWPT-T--PTNVVTDSAFVAKMLLKMGQEGVPS------TA------AAFILEDALSQRSAMAAVLHVRSHSEVP-GFFTEGNDVADSQATFQAYPLR--------