"Table S4. Genes differentially DNAm with passage and differentially expressed with TNFα treatment but dependent on passage group. Columns are: gene name, Ensembl gene ID, low passage p value and q value for gene expression association to TNFα treatment, high passage p value and q value for gene expression association to TNFα treatment, CpGs associated to the gene which were hypermethylated or hypomethylated. ",,,,,,,
Gene,Ensembl gene name,Low Passage p value,Low Passage q value,High Passage p value,High Passage q value,Hypermethylated CpGs,Hypomethylated CpGs
CNTNAP1,ENSG00000108797,0.00012,0.0032,0.083,0.19,cg12432580,NA
STMN3,ENSG00000197457,0.00019,0.0044,0.13,0.23,NA,cg18346693
IRF2BPL,ENSG00000119669,0.00022,0.0047,1,1,cg13493526,NA
GPR37L1,ENSG00000170075,0.00031,0.0059,0.011,0.063,NA,cg19404354
LDLRAD4,ENSG00000168675,0.00042,0.0073,0.076,0.18,NA,cg24413550
CAPN13,ENSG00000162949,0.00061,0.0093,0.091,0.19,NA,cg24516261
CPXM2,ENSG00000121898,0.00061,0.0093,0.038,0.13,NA,cg03073429
DLL1,ENSG00000198719,0.00061,0.0093,0.028,0.11,cg14347219,NA
DLL1,ENSG00000275555,0.00061,0.0093,0.028,0.11,cg14347219,NA
FOXO1,ENSG00000150907,0.00064,0.0097,0.0095,0.056,cg23413567,NA
ETS1,ENSG00000134954,0.00069,0.01,0.098,0.2,NA,cg23989409
CMIP,ENSG00000153815,0.00073,0.011,0.045,0.14,NA,cg10718521
FA2H,ENSG00000103089,0.00098,0.013,0.47,0.52,NA,cg04447128
SLC18A1,ENSG00000036565,0.0015,0.018,0.027,0.11,NA,cg14786258
ACSL1,ENSG00000151726,0.0016,0.018,0.023,0.1,NA,"cg01944899, cg01154380"
AGAP1,ENSG00000157985,0.0016,0.018,0.07,0.18,cg08348422,cg13250592
APLP1,ENSG00000105290,0.0016,0.018,0.037,0.13,NA,cg19220607
KIAA1217,ENSG00000120549,0.0016,0.018,0.097,0.2,NA,cg23755860
CA8,ENSG00000178538,0.0017,0.019,0.062,0.17,NA,cg18800948
CADM1,ENSG00000182985,0.0018,0.02,0.01,0.06,NA,cg03505501
EPHA2,ENSG00000142627,0.0018,0.02,0.15,0.25,NA,"cg26371327, cg27582323, cg21647035, cg14942617, cg07959609"
ATRN,ENSG00000088812,0.0019,0.02,0.25,0.33,cg26514816,NA
SH3D19,ENSG00000109686,0.0019,0.02,0.021,0.094,NA,cg15143723
NAV2,ENSG00000166833,0.002,0.021,0.032,0.12,cg24565274,cg23330281
SPINK1,ENSG00000164266,0.002,0.021,0.12,0.22,cg02244697,NA
CAMK1D,ENSG00000183049,0.0021,0.022,0.23,0.31,NA,cg10523399
FDPS,ENSG00000160752,0.0021,0.022,0.015,0.078,"cg08170787, cg23190823",NA
STK24,ENSG00000102572,0.0022,0.022,0.012,0.064,NA,"cg07804470, cg17512276"
THSD4,ENSG00000187720,0.0022,0.022,0.19,0.28,cg14080982,cg20097000
SMIM3,ENSG00000256235,0.0024,0.024,0.027,0.11,NA,cg14580211
MCAM,ENSG00000076706,0.0025,0.025,0.011,0.062,NA,cg06338928
PAK1,ENSG00000149269,0.0026,0.025,0.056,0.16,cg00986162,NA
SLC12A6,ENSG00000140199,0.003,0.028,0.0099,0.058,NA,cg06477179
KDM6B,ENSG00000132510,0.0031,0.029,0.012,0.065,NA,cg00031013
PDGFB,ENSG00000100311,0.0031,0.029,0.29,0.36,cg19353578,NA
SCFD2,ENSG00000184178,0.0031,0.029,0.2,0.29,cg04378604,NA
FOXN3,ENSG00000053254,0.0032,0.029,0.041,0.14,cg11196874,NA
PGM5,ENSG00000154330,0.0034,0.03,0.01,0.058,NA,cg11564884
JAZF1,ENSG00000153814,0.0035,0.031,0.066,0.17,NA,cg26542383
PDE4DIP,ENSG00000178104,0.0035,0.031,0.036,0.13,NA,"cg23306824, cg26008369, cg18131267"
PSD3,ENSG00000156011,0.0037,0.032,0.0085,0.052,NA,cg09594160
YBX3,ENSG00000060138,0.0039,0.034,0.075,0.18,NA,cg18636739
CENPH,ENSG00000153044,0.0042,0.036,0.073,0.18,NA,cg04280928
ACSM3,ENSG00000005187,0.0044,0.037,0.012,0.068,NA,cg01555300
SH3TC1,ENSG00000125089,0.0044,0.037,0.07,0.18,NA,cg01610979
APCDD1,ENSG00000154856,0.0048,0.039,0.059,0.16,NA,cg18208602
CIITA,ENSG00000179583,0.005,0.04,0.016,0.081,NA,"cg12340451, cg12136932"
NFATC1,ENSG00000131196,0.005,0.04,0.11,0.21,NA,cg22532194
PFKFB2,ENSG00000123836,0.005,0.04,0.033,0.12,cg12480689,NA
PTPRG,ENSG00000144724,0.0057,0.044,0.08,0.18,NA,cg14876280
FAM169B,ENSG00000283597,0.0059,0.045,0.13,0.23,NA,cg18576057
ZBTB7B,ENSG00000160685,0.006,0.046,0.065,0.17,"cg01782486, cg04101478",NA
THRB,ENSG00000151090,0.0063,0.047,0.02,0.091,cg01165683,NA
HS1BP3,ENSG00000118960,0.0066,0.049,0.062,0.17,cg17605007,NA
MGAM,ENSG00000257335,0.0066,0.049,0.024,0.1,NA,"cg01184282, cg25481253, cg24102749"
RAB8B,ENSG00000166128,0.0068,0.049,0.0092,0.055,NA,cg25447873