Gene,SNP,Scaffold,Allele,Feature,Feature_type,Consequence,cDNA_position,CDS_position,Protein_position,Amino_acids,Codons,Existing_variation,Annotation_accession,Annotation_source,Annotation
Thupl.29136377s0001,29136377_1941,29136377,A,Thupl.29136377s0001.1.v3.1,Transcript,synonymous_variant,463,249,83,A,gcG/gcT,NA,1.13.11.58,EC,Linoleate 9S-lipoxygenase
Thupl.29174845s0001,29174845_4713,29174845,T,Thupl.29174845s0001.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR43670,PANTHER,
Thupl.29174845s0001,29174845_4713,29174845,T,Thupl.29174845s0001.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PF00011,PFAM,Hsp20/alpha crystallin family
Thupl.29359568s0002,29359568_186542,29359568,T,Thupl.29359568s0002.1.v3.1,Transcript,missense_variant,444,424,142,G/W,Ggg/Tgg,NA,PTHR15852:SF29,PANTHER,
Thupl.29359568s0002,29359568_186542,29359568,T,Thupl.29359568s0002.1.v3.1,Transcript,missense_variant,444,424,142,G/W,Ggg/Tgg,NA,PTHR15852,PANTHER,FAMILY NOT NAMED
Thupl.29363519s0001,29363519_55273,29363519,G,Thupl.29363519s0001.1.v3.1,Transcript,missense_variant,668,491,164,V/A,gTa/gCa,NA,GO:0010112,GO,regulation of systemic acquired resistance
Thupl.29363519s0001,29363519_55273,29363519,G,Thupl.29363519s0001.1.v3.1,Transcript,missense_variant,668,491,164,V/A,gTa/gCa,NA,PF15699,PFAM,
Thupl.29363519s0001,29363519_55273,29363519,G,Thupl.29363519s0001.1.v3.1,Transcript,missense_variant,668,491,164,V/A,gTa/gCa,NA,PTHR33669,PANTHER,
Thupl.29377099s0001,29377099_105103,29377099,A,Thupl.29377099s0001.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR35479,PANTHER,
Thupl.29377099s0001,29377099_105103,29377099,A,Thupl.29377099s0001.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,1.6.5.3,EC,NADH:ubiquinone reductase (H(+)-translocating)
Thupl.29377132s0006,29377132_5128033,29377132,A,Thupl.29377132s0006.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR13734:SF52,PANTHER,
Thupl.29377132s0006,29377132_5128033,29377132,A,Thupl.29377132s0006.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR13734,PANTHER,TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER
Thupl.29377194s0003,29377194_150961,29377194,A,Thupl.29377194s0003.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR36382,PANTHER,
Thupl.29377356s0014,29377356_2392275,29377356,T,Thupl.29377356s0014.1.v3.1,Transcript,3_prime_UTR_variant,1815,NA,NA,NA,NA,NA,NA,NA,NA
Thupl.29377547s0005,29377547_1896280,29377547,T,Thupl.29377547s0005.1.v3.1,Transcript,missense_variant,343,59,20,I/N,aTt/aAt,NA,K17662,KEGGORTH,
Thupl.29377547s0005,29377547_1896280,29377547,T,Thupl.29377547s0005.1.v3.1,Transcript,missense_variant,343,59,20,I/N,aTt/aAt,NA,PTHR12184,PANTHER,BASIC FGF-REPRESSED ZIC BINDING PROTEIN HOMOLOG (ZIC3-BINDING PROTEIN)
Thupl.29377547s0005,29377547_1896280,29377547,T,Thupl.29377547s0005.1.v3.1,Transcript,missense_variant,343,59,20,I/N,aTt/aAt,NA,PF03981,PFAM,Ubiquinol-cytochrome C chaperone
Thupl.29377547s0005,29377547_1896280,29377547,T,Thupl.29377547s0005.1.v3.1,Transcript,missense_variant,343,59,20,I/N,aTt/aAt,NA,PTHR12184:SF1,PANTHER,ZIC3 BINDING PROTEIN-RELATED
Thupl.29377547s0005,29377547_1896280,29377547,T,Thupl.29377547s0005.1.v3.1,Transcript,missense_variant,343,59,20,I/N,aTt/aAt,NA,KOG2873,KOG,Ubiquinol cytochrome c reductase assembly protein CBP3
Thupl.29377600s0003,29377600_1072327,29377600,T,Thupl.29377600s0003.1.v3.1,Transcript,5_prime_UTR_variant,271,NA,NA,NA,NA,NA,K17623,KEGGORTH,
Thupl.29377600s0003,29377600_1072327,29377600,T,Thupl.29377600s0003.1.v3.1,Transcript,5_prime_UTR_variant,271,NA,NA,NA,NA,NA,KOG2914,KOG,Predicted haloacid-halidohydrolase and related hydrolases
Thupl.29377600s0003,29377600_1072327,29377600,T,Thupl.29377600s0003.1.v3.1,Transcript,5_prime_UTR_variant,271,NA,NA,NA,NA,NA,PTHR18901:SF38,PANTHER,
Thupl.29377600s0003,29377600_1072327,29377600,T,Thupl.29377600s0003.1.v3.1,Transcript,5_prime_UTR_variant,271,NA,NA,NA,NA,NA,PF13419,PFAM,Haloacid dehalogenase-like hydrolase
Thupl.29377600s0003,29377600_1072327,29377600,T,Thupl.29377600s0003.1.v3.1,Transcript,5_prime_UTR_variant,271,NA,NA,NA,NA,NA,3.1.3.21,EC,Glycerol-1-phosphatase
Thupl.29377600s0003,29377600_1072327,29377600,T,Thupl.29377600s0003.1.v3.1,Transcript,5_prime_UTR_variant,271,NA,NA,NA,NA,NA,PTHR18901,PANTHER,2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
Thupl.29377795s0008,29377795_1853607,29377795,T,Thupl.29377795s0008.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0005525,GO,GTP binding
Thupl.29377795s0008,29377795_1853607,29377795,T,Thupl.29377795s0008.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,K07955,KEGGORTH,ADP-ribosylation factor-like 8A
Thupl.29377795s0008,29377795_1853607,29377795,T,Thupl.29377795s0008.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR11711:SF293,PANTHER,
Thupl.29377795s0008,29377795_1853607,29377795,T,Thupl.29377795s0008.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PF00025,PFAM,ADP-ribosylation factor family
Thupl.29377795s0008,29377795_1853607,29377795,T,Thupl.29377795s0008.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR11711,PANTHER,ADP RIBOSYLATION FACTOR-RELATED
Thupl.29377795s0008,29377795_1853607,29377795,T,Thupl.29377795s0008.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,KOG0075,KOG,GTP-binding ADP-ribosylation factor-like protein
Thupl.29377880s0020,29377880_5746482,29377880,C,Thupl.29377880s0020.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR33646,PANTHER,
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,3.4.14.10,EC,Tripeptidyl-peptidase II
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,SignalP-noTM,SIGNALP,
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,PTHR10795,PANTHER,PROPROTEIN CONVERTASE SUBTILISIN/KEXIN
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,PF05922,PFAM,Peptidase inhibitor I9
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,GO:0004252,GO,serine-type endopeptidase activity
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,PF00082,PFAM,Subtilase family
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,PTHR10795:SF468,PANTHER,
Thupl.29378458s0005,29378458_500697,29378458,T,Thupl.29378458s0005.1.v3.1,Transcript,missense_variant,966,947,316,V/E,gTa/gAa,NA,GO:0006508,GO,proteolysis
Thupl.29378491s0007,29378491_409435,29378491,T,Thupl.29378491s0007.1.v3.1,Transcript,missense_variant,1374,1238,413,R/H,cGt/cAt,NA,PTHR11538:SF54,PANTHER,
Thupl.29378491s0007,29378491_409435,29378491,T,Thupl.29378491s0007.1.v3.1,Transcript,missense_variant,1374,1238,413,R/H,cGt/cAt,NA,PTHR11538,PANTHER,PHENYLALANYL-TRNA SYNTHETASE
Thupl.29378491s0007,29378491_409435,29378491,T,Thupl.29378491s0007.1.v3.1,Transcript,missense_variant,1374,1238,413,R/H,cGt/cAt,NA,PF10354,PFAM,Domain of unknown function (DUF2431)
Thupl.29378491s0007,29378491_409435,29378491,T,Thupl.29378491s0007.1.v3.1,Transcript,missense_variant,1374,1238,413,R/H,cGt/cAt,NA,KOG4174,KOG,Uncharacterized conserved protein
Thupl.29378491s0007,29378491_409435,29378491,T,Thupl.29378491s0007.1.v3.1,Transcript,missense_variant,1374,1238,413,R/H,cGt/cAt,NA,K19307,KEGGORTH,
Thupl.29378840s0005,29378840_1500226,29378840,T,Thupl.29378840s0005.1.v3.1,Transcript,missense_variant,74,74,25,G/D,gGt/gAt,NA,PTHR13077,PANTHER,FAMILY NOT NAMED
Thupl.29378840s0005,29378840_1500226,29378840,T,Thupl.29378840s0005.1.v3.1,Transcript,missense_variant,74,74,25,G/D,gGt/gAt,NA,PF08806,PFAM,Sep15/SelM redox domain
Thupl.29378840s0005,29378840_1500226,29378840,T,Thupl.29378840s0005.1.v3.1,Transcript,missense_variant,74,74,25,G/D,gGt/gAt,NA,KOG3384,KOG,Selenoprotein
Thupl.29378840s0005,29378840_1500226,29378840,T,Thupl.29378840s0005.1.v3.1,Transcript,missense_variant,74,74,25,G/D,gGt/gAt,NA,SignalP-noTM,SIGNALP,
Thupl.29378840s0005,29378840_1500226,29378840,T,Thupl.29378840s0005.1.v3.1,Transcript,missense_variant,74,74,25,G/D,gGt/gAt,NA,PTHR13077:SF10,PANTHER,
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,PF00320,PFAM,GATA zinc finger
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0006355,GO,"regulation of transcription, DNA-dependent"
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0003700,GO,sequence-specific DNA binding transcription factor activity
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0043565,GO,sequence-specific DNA binding
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR10071:SF163,PANTHER,
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR10071,PANTHER,TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Thupl.29378876s0011,29378876_3289204,29378876,C,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0008270,GO,zinc ion binding
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,PF00320,PFAM,GATA zinc finger
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0006355,GO,"regulation of transcription, DNA-dependent"
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0003700,GO,sequence-specific DNA binding transcription factor activity
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0043565,GO,sequence-specific DNA binding
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR10071:SF163,PANTHER,
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR10071,PANTHER,TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Thupl.29378876s0011,29378876_3289197,29378876,A,Thupl.29378876s0011.1.v3.1,Transcript,downstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0008270,GO,zinc ion binding
Thupl.29380109s0002,29380109_1544310,29380109,C,Thupl.29380109s0002.1.v3.1,Transcript,splice_region_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
Thupl.29380136s0001,29380136_15246,29380136,T,Thupl.29380136s0001.1.v3.1,Transcript,synonymous_variant,512,468,156,P,ccG/ccT,NA,K18368,KEGGORTH,
Thupl.29380136s0001,29380136_15246,29380136,T,Thupl.29380136s0001.1.v3.1,Transcript,synonymous_variant,512,468,156,P,ccG/ccT,NA,2.3.1.22,EC,2-acylglycerol O-acyltransferase
Thupl.29380136s0001,29380136_15246,29380136,T,Thupl.29380136s0001.1.v3.1,Transcript,synonymous_variant,512,468,156,P,ccG/ccT,NA,PF12146,PFAM,Putative lysophospholipase
Thupl.29380136s0001,29380136_15246,29380136,T,Thupl.29380136s0001.1.v3.1,Transcript,synonymous_variant,512,468,156,P,ccG/ccT,NA,PTHR11614,PANTHER,PHOSPHOLIPASE-RELATED
Thupl.29380136s0001,29380136_15246,29380136,T,Thupl.29380136s0001.1.v3.1,Transcript,synonymous_variant,512,468,156,P,ccG/ccT,NA,PTHR11614:SF90,PANTHER,
Thupl.29380136s0001,29380136_15246,29380136,T,Thupl.29380136s0001.1.v3.1,Transcript,synonymous_variant,512,468,156,P,ccG/ccT,NA,KOG1455,KOG,Lysophospholipase
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,GO:0005515,GO,protein binding
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,PF00931,PFAM,NB-ARC domain
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,PF01582,PFAM,TIR domain
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,GO:0043531,GO,ADP binding
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,GO:0007165,GO,signal transduction
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,PTHR11017,PANTHER,LEUCINE-RICH REPEAT-CONTAINING PROTEIN
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,KOG4658,KOG,Apoptotic ATPase
Thupl.29380212s0010,29380212_3536094,29380212,C,Thupl.29380212s0010.1.v3.1,Transcript,missense_variant,3560,3250,1084,D/H,Gac/Cac,NA,PF00560,PFAM,Leucine Rich Repeat
Thupl.29380348s0004,29380348_346761,29380348,G,Thupl.29380348s0004.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR38226,PANTHER,
Thupl.29380348s0004,29380348_346759,29380348,G,Thupl.29380348s0004.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR38226,PANTHER,
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,KOG2922,KOG,Uncharacterized conserved protein
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,PTHR12570:SF48,PANTHER,
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,GO:0016021,GO,integral to membrane
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,PF05653,PFAM,Magnesium transporter NIPA
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,GO:0015693,GO,magnesium ion transport
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,PTHR12570,PANTHER,UNCHARACTERIZED
Thupl.29380433s0001,29380433_363491,29380433,G,Thupl.29380433s0001.1.v3.1,Transcript,5_prime_UTR_variant,849,NA,NA,NA,NA,NA,GO:0015095,GO,magnesium ion transmembrane transporter activity
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,PTHR10209:SF98,PANTHER,
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,KOG0143,KOG,Iron/ascorbate family oxidoreductases
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,GO:0055114,GO,oxidation-reduction process
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,PF14226,PFAM,non-haem dioxygenase in morphine synthesis N-terminal
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,PF03171,PFAM,2OG-Fe(II) oxygenase superfamily
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,GO:0016491,GO,oxidoreductase activity
Thupl.29380441s0008,29380441_819644,29380441,A,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,80,NA,NA,NA,NA,NA,PTHR10209,PANTHER,"OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN"
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,PTHR10209:SF98,PANTHER,
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,KOG0143,KOG,Iron/ascorbate family oxidoreductases
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,GO:0055114,GO,oxidation-reduction process
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,PF14226,PFAM,non-haem dioxygenase in morphine synthesis N-terminal
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,PF03171,PFAM,2OG-Fe(II) oxygenase superfamily
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,GO:0016491,GO,oxidoreductase activity
Thupl.29380441s0008,29380441_819686,29380441,G,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,122,NA,NA,NA,NA,NA,PTHR10209,PANTHER,"OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN"
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,PTHR10209:SF98,PANTHER,
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,KOG0143,KOG,Iron/ascorbate family oxidoreductases
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,GO:0055114,GO,oxidation-reduction process
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,PF14226,PFAM,non-haem dioxygenase in morphine synthesis N-terminal
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,PF03171,PFAM,2OG-Fe(II) oxygenase superfamily
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,GO:0016491,GO,oxidoreductase activity
Thupl.29380441s0008,29380441_819645,29380441,C,Thupl.29380441s0008.1.v3.1,Transcript,5_prime_UTR_variant,81,NA,NA,NA,NA,NA,PTHR10209,PANTHER,"OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN"
Thupl.29380477s0009,29380477_1176363,29380477,C,Thupl.29380477s0009.1.v3.1,Transcript,synonymous_variant,120,120,40,T,acA/acG,NA,PTHR31791,PANTHER,FAMILY NOT NAMED
Thupl.29380477s0009,29380477_1176363,29380477,C,Thupl.29380477s0009.1.v3.1,Transcript,synonymous_variant,120,120,40,T,acA/acG,NA,PF07899,PFAM,Frigida-like protein
Thupl.29380824s0015,29380824_2911344,29380824,A,Thupl.29380824s0015.1.v3.1,Transcript,3_prime_UTR_variant,4137,NA,NA,NA,NA,NA,PTHR12663,PANTHER,ANDROGEN INDUCED INHIBITOR OF PROLIFERATION (AS3) / PDS5-RELATED
Thupl.29380929s0006,29380929_786957,29380929,G,Thupl.29380929s0006.1.v3.1,Transcript,missense_variant,134,134,45,N/S,aAt/aGt,NA,NA,NA,NA
Thupl.29381082s0029,29381082_3694288,29381082,A,Thupl.29381082s0029.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PF01764,PFAM,Lipase (class 3)
Thupl.29381082s0029,29381082_3694288,29381082,A,Thupl.29381082s0029.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR31479,PANTHER,FAMILY NOT NAMED
Thupl.29381082s0029,29381082_3694288,29381082,A,Thupl.29381082s0029.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0006629,GO,lipid metabolic process
Thupl.29381428s0003,29381428_309037,29381428,G,Thupl.29381428s0003.1.v3.1,Transcript,missense_variant,473,413,138,L/P,cTt/cCt,NA,PTHR24106:SF257,PANTHER,
Thupl.29381428s0003,29381428_309037,29381428,G,Thupl.29381428s0003.1.v3.1,Transcript,missense_variant,473,413,138,L/P,cTt/cCt,NA,PTHR24106,PANTHER,FAMILY NOT NAMED
Thupl.29381491s0003,29381491_2228995,29381491,A,Thupl.29381491s0003.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0055085,GO,transmembrane transport
Thupl.29381491s0003,29381491_2228995,29381491,A,Thupl.29381491s0003.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR23505:SF44,PANTHER,
Thupl.29381491s0003,29381491_2228995,29381491,A,Thupl.29381491s0003.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PF07690,PFAM,Major Facilitator Superfamily
Thupl.29381491s0003,29381491_2228995,29381491,A,Thupl.29381491s0003.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,GO:0016021,GO,integral to membrane
Thupl.29381491s0003,29381491_2228995,29381491,A,Thupl.29381491s0003.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,PTHR23505,PANTHER,
Thupl.29381491s0003,29381491_2228995,29381491,A,Thupl.29381491s0003.1.v3.1,Transcript,upstream_gene_variant,NA,NA,NA,NA,NA,NA,KOG1330,KOG,Sugar transporter/spinster transmembrane protein
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR24092,PANTHER,FAMILY NOT NAMED
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0000287,GO,magnesium ion binding
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0015914,GO,phospholipid transport
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,3.6.3.1,EC,Phospholipid-translocating ATPase
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0016021,GO,integral to membrane
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR24092:SF85,PANTHER,
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0004012,GO,phospholipid-translocating ATPase activity
Thupl.29382180s0001,29382180_43217,29382180,A,Thupl.29382180s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0005524,GO,ATP binding
Thupl.29382198s0004,29382198_238880,29382198,T,Thupl.29382198s0004.1.v3.1,Transcript,missense_variant,64,19,7,G/C,Ggt/Tgt,NA,PF02536,PFAM,mTERF
Thupl.29382198s0004,29382198_238880,29382198,T,Thupl.29382198s0004.1.v3.1,Transcript,missense_variant,64,19,7,G/C,Ggt/Tgt,NA,K15032,KEGGORTH,
Thupl.29382198s0004,29382198_238880,29382198,T,Thupl.29382198s0004.1.v3.1,Transcript,missense_variant,64,19,7,G/C,Ggt/Tgt,NA,GO:0006355,GO,"regulation of transcription, DNA-dependent"
Thupl.29382198s0004,29382198_238880,29382198,T,Thupl.29382198s0004.1.v3.1,Transcript,missense_variant,64,19,7,G/C,Ggt/Tgt,NA,PTHR13068,PANTHER,CGI-12 PROTEIN-RELATED
Thupl.29382198s0004,29382198_238880,29382198,T,Thupl.29382198s0004.1.v3.1,Transcript,missense_variant,64,19,7,G/C,Ggt/Tgt,NA,GO:0003690,GO,double-stranded DNA binding
Thupl.29382337s0001,29382337_70657,29382337,A,Thupl.29382337s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,KOG1589,KOG,Uncharacterized conserved protein
Thupl.29382337s0001,29382337_70657,29382337,A,Thupl.29382337s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0005743,GO,mitochondrial inner membrane
Thupl.29382337s0001,29382337_70657,29382337,A,Thupl.29382337s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR14154:SF2,PANTHER,BRAIN PROTEIN 44/YHR162W(YEAST)
Thupl.29382337s0001,29382337_70657,29382337,A,Thupl.29382337s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0006850,GO,mitochondrial pyruvate transport
Thupl.29382337s0001,29382337_70657,29382337,A,Thupl.29382337s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR14154,PANTHER,UPF0041 BRAIN PROTEIN 44-RELATED
Thupl.29382337s0001,29382337_70657,29382337,A,Thupl.29382337s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PF03650,PFAM,Uncharacterised protein family (UPF0041)
Thupl.29382396s0001,29382396_57639,29382396,A,Thupl.29382396s0001.2.v3.1,Transcript,3_prime_UTR_variant,1542,NA,NA,NA,NA,NA,PTHR23215,PANTHER,ZINC FINGER PROTEIN 207
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0006281,GO,DNA repair
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR11081,PANTHER,XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PF00752,PFAM,XPG N-terminal domain
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PF00867,PFAM,XPG I-region
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,KOG2519,KOG,5'-3' exonuclease
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,3.1.16.1,EC,Spleen exonuclease
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,GO:0004518,GO,nuclease activity
Thupl.29382407s0001,29382407_576348,29382407,A,Thupl.29382407s0001.1.v3.1,Transcript,intron_variant,NA,NA,NA,NA,NA,NA,PTHR11081:SF30,PANTHER,
Thupl.29382473s0008,29382473_1907865,29382473,C,Thupl.29382473s0008.1.v3.1,Transcript,synonymous_variant,1060,477,159,G,ggA/ggG,NA,PTHR43085,PANTHER,
Thupl.29382473s0008,29382473_1907865,29382473,C,Thupl.29382473s0008.1.v3.1,Transcript,synonymous_variant,1060,477,159,G,ggA/ggG,NA,K00847,KEGGORTH,fructokinase [EC:2.7.1.4]
Thupl.29382473s0008,29382473_1907865,29382473,C,Thupl.29382473s0008.1.v3.1,Transcript,synonymous_variant,1060,477,159,G,ggA/ggG,NA,PF00294,PFAM,pfkB family carbohydrate kinase
Thupl.29382473s0008,29382473_1907865,29382473,C,Thupl.29382473s0008.1.v3.1,Transcript,synonymous_variant,1060,477,159,G,ggA/ggG,NA,PTHR43085:SF4,PANTHER,
Thupl.29382473s0008,29382473_1907865,29382473,C,Thupl.29382473s0008.1.v3.1,Transcript,synonymous_variant,1060,477,159,G,ggA/ggG,NA,2.7.1.4,EC,Fructokinase
Thupl.29382473s0008,29382473_1907865,29382473,C,Thupl.29382473s0008.1.v3.1,Transcript,synonymous_variant,1060,477,159,G,ggA/ggG,NA,KOG2855,KOG,Ribokinase
NA,29378326_32686,29378326,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377236_46401,29377236,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29336980_171541,29336980,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377464_1053087,29377464,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29360225_75472,29360225,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378397_88052,29378397,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,293683531_82582,293683531,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29371212_81411,29371212,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377033_107768,29377033,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377049_4590,29377049,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29382309_97928,29382309,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377188_240971,29377188,A,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29379160_5317641,29379160,A,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378326_32699,29378326,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29381607_320146,29381607,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378326_32725,29378326,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377487_252761,29377487,A,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29381607_320144,29381607,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29379162_2297351,29379162,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377618_885516,29377618,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377768_2304966,29377768,C,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29377768_2304971,29377768,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378837_110832,29378837,T,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378326_32705,29378326,A,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378075_1667128,29378075,A,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378326_32750,29378326,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29378706_32243,29378706,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29381850_247637,29381850,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA
NA,29379402_2307409,29379402,G,NA,NA,intergenic_variant,NA,NA,NA,NA,NA,NA,NA,NA,NA