SV Count Allele Frequency Relative Count Reduction AF Fold Increase AF Relative to Truvari reference merge TOT DEL INS TOT DEL INS TOT DEL INS TOT DEL INS hg19 exact 339,870 78,036 261,834 0.05 0.08 0.04 . . . . . . 0.6 hg19 truvari 190,878 61,493 129,385 0.08 0.10 0.08 43.84% 21.20% 50.59% 1.8 1.3 2.0 . hg19 jasmine 125,841 48,600 77,241 0.13 0.13 0.13 62.97% 37.72% 70.50% 2.7 1.6 3.4 1.5 hg19 naive 105,759 44,429 61,330 0.14 0.14 0.14 68.88% 43.07% 76.58% 2.9 1.7 3.7 1.7 hg19 survivor 71,845 30,372 41,473 0.19 0.18 0.19 78.86% 61.08% 84.16% 3.9 2.2 5.1 2.2 grch38 exact 347,158 80,322 266,836 0.05 0.08 0.04 . . . . . . 0.6 grch38 truvari 195,705 63,418 132,287 0.08 0.10 0.08 43.63% 21.05% 50.42% 1.7 1.3 2.0 . grch38 jasmine 129,744 50,278 79,466 0.13 0.13 0.13 62.63% 37.40% 70.22% 2.7 1.6 3.4 1.5 grch38 naive 109,379 46,087 63,292 0.14 0.13 0.14 68.49% 42.62% 76.28% 2.9 1.7 3.7 1.6 grch38 survivor 74,288 31,560 42,728 0.19 0.18 0.19 78.60% 60.71% 83.99% 3.9 2.2 5.0 2.2 chm13 exact 329,937 121,038 208,899 0.04 0.06 0.04 . . . . . . 0.7 chm13 truvari 212,670 92,996 119,674 0.07 0.08 0.06 35.54% 23.17% 42.71% 1.5 1.3 1.7 . chm13 jasmine 151,975 70,696 81,279 0.10 0.10 0.09 53.94% 41.59% 61.09% 2.2 1.7 2.6 1.4 chm13 naive 137,594 64,361 73,233 0.10 0.11 0.09 58.30% 46.83% 64.94% 2.2 1.8 2.6 1.5 chm13 survivor 87,150 40,554 46,596 0.14 0.15 0.13 73.59% 66.49% 77.69% 3.2 2.5 3.7 2.1 Average exact 338,988 93,132 245,856 0.05 0.07 0.04 . . . . . . 0.6 Average truvari 199,751 72,636 127,115 0.08 0.09 0.07 41.00% 21.80% 47.91% 1.7 1.3 1.9 . Average jasmine 135,853 56,525 79,329 0.12 0.12 0.12 59.85% 38.91% 67.27% 2.5 1.6 3.1 1.5 Average naive 117,577 51,626 65,952 0.13 0.13 0.13 65.22% 44.17% 72.60% 2.7 1.7 3.3 1.6 Average survivor 77,761 34,162 43,599 0.17 0.17 0.17 77.02% 62.76% 81.95% 3.6 2.3 4.6 2.2