NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 19,796.1
Mean read quality 9.8
Median read length 17,358.0
Median read quality 10.0
Number of reads 5,112,042.0
Read length N50 26,324.0
STDEV read length 13,513.1
Total bases 101,198,259,873.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 5112042 (100.0%) 101198.3Mb
>Q7 5112040 (100.0%) 101198.3Mb
>Q10 2576835 (50.4%) 52569.6Mb
>Q12 43074 (0.8%) 600.7Mb
>Q15 3 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 15.3 (232)
2 15.2 (258)
3 15.0 (207)
4 15.0 (5650)
5 14.9 (238)
Top 5 longest reads and their mean basecall quality score
1 184691 (9.9)
2 184107 (7.9)
3 183701 (10.4)
4 181567 (9.9)
5 178870 (10.1)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots