Exposure Outcome Effect type Point estimate (95%CI) P-value Estimator Heterogeneity P-value Precision No. variants Apo-B CHD (OR) Total 1.45 (1.24; 1.68) < 0.001 MR Egger < 0.001 1.7×10² 29 Apo-B CHD (OR) LDL-C independent 1.87 (1.55; 2.25) < 0.001 IVW < 0.001 1.1×10² 36 Apo-B CHD (OR) HDL-C independent 1.71 (1.56; 1.88) < 0.001 MR Egger < 0.001 4.3×10² 49 Apo-B CHD (OR) TG independent 1.56 (1.39; 1.74) < 0.001 MR Egger < 0.001 3.1×10² 39 Apo-B CHD (OR) LDL-C & HDL-C & TG independent 3.80 (1.96; 7.38) < 0.001 IVW < 0.001 8.7 59 Apo-B HF (OR) Total 1.04 (1.00; 1.07) 0.036 IVW 0.050 3.2×10³ 92 Apo-B HF (OR) LDL-C independent 1.08 (0.95; 1.22) 0.241 IVW < 0.001 2.4×10² 132 Apo-B HF (OR) HDL-C independent 1.06 (1.03; 1.10) < 0.001 IVW 0.002 3.2×10³ 162 Apo-B HF (OR) TG independent 0.98 (0.92; 1.04) 0.472 IVW 0.003 1.0×10³ 127 Apo-B HF (OR) LDL-C & HDL-C & TG independent 1.89 (1.46; 2.43) < 0.001 IVW < 0.001 5.9×10¹ 230 Apo-B AF (OR) Total 1.02 (0.99; 1.05) 0.288 IVW 0.148 4.0×10³ 99 Apo-B AF (OR) LDL-C independent 0.97 (0.87; 1.08) 0.559 IVW 0.022 3.5×10² 144 Apo-B AF (OR) HDL-C independent 1.02 (0.99; 1.06) 0.137 IVW 0.088 4.1×10³ 175 Apo-B AF (OR) TG independent 1.03 (0.98; 1.08) 0.304 IVW 0.003 1.4×10³ 140 Apo-B AF (OR) LDL-C & HDL-C & TG independent 1.00 (0.81; 1.25) 0.978 IVW < 0.001 8.0×10¹ 251 Apo-B Any stroke (OR) Total 1.07 (1.02; 1.12) 0.003 IVW 0.127 2.0×10³ 93 Apo-B Any stroke (OR) LDL-C independent 1.02 (0.88; 1.18) 0.799 IVW < 0.001 1.8×10² 132 Apo-B Any stroke (OR) HDL-C independent 1.05 (1.01; 1.09) 0.011 IVW 0.002 2.5×10³ 167 Apo-B Any stroke (OR) TG independent 1.07 (1.00; 1.16) 0.052 IVW 0.017 7.3×10² 133 Apo-B Any stroke (OR) LDL-C & HDL-C & TG independent 1.28 (0.94; 1.75) 0.121 IVW < 0.001 4.0×10¹ 239 Apo-B Any ischemic stroke (OR) Total 1.09 (1.04; 1.15) < 0.001 IVW 0.157 1.7×10³ 92 Apo-B Any ischemic stroke (OR) LDL-C independent 1.00 (0.85; 1.17) 0.972 IVW 0.002 1.5×10² 131 Apo-B Any ischemic stroke (OR) HDL-C independent 1.06 (1.02; 1.11) 0.004 IVW < 0.001 2.2×10³ 169 Apo-B Any ischemic stroke (OR) TG independent 1.05 (0.95; 1.15) 0.347 MR Egger 0.090 4.2×10² 135 Apo-B Any ischemic stroke (OR) LDL-C & HDL-C & TG independent 1.27 (0.90; 1.78) 0.171 IVW < 0.001 3.3×10¹ 237 Apo-B Large artery stroke (OR) Total 1.05 (0.94; 1.17) 0.371 IVW 0.005 3.2×10² 95 Apo-B Large artery stroke (OR) LDL-C independent 0.74 (0.51; 1.07) 0.114 MR Egger < 0.001 2.8×10¹ 138 Apo-B Large artery stroke (OR) HDL-C independent 0.92 (0.78; 1.07) 0.272 MR Egger 0.009 1.5×10² 170 Apo-B Large artery stroke (OR) TG independent 1.05 (0.86; 1.28) 0.638 IVW 0.002 9.9×10¹ 135 Apo-B Large artery stroke (OR) LDL-C & HDL-C & TG independent 1.62 (0.69; 3.79) 0.269 IVW < 0.001 5.3 240 Apo-B Cardioembolic stroke (OR) Total 1.04 (0.96; 1.13) 0.367 IVW 0.004 5.4×10² 95 Apo-B Cardioembolic stroke (OR) LDL-C independent 1.09 (0.80; 1.47) 0.601 IVW < 0.001 4.1×10¹ 134 Apo-B Cardioembolic stroke (OR) HDL-C independent 1.01 (0.93; 1.10) 0.772 IVW 0.006 5.8×10² 171 Apo-B Cardioembolic stroke (OR) TG independent 1.07 (0.92; 1.25) 0.366 IVW 0.009 1.6×10² 134 Apo-B Cardioembolic stroke (OR) LDL-C & HDL-C & TG independent 2.61 (1.33; 5.11) 0.005 IVW 0.008 8.5 237 Apo-B Small vessel stroke (OR) Total 0.84 (0.64; 1.10) 0.201 MR Egger 0.108 5.3×10¹ 96 Apo-B Small vessel stroke (OR) LDL-C independent 0.98 (0.69; 1.38) 0.894 IVW 0.022 3.3×10¹ 137 Apo-B Small vessel stroke (OR) HDL-C independent 0.99 (0.86; 1.14) 0.923 MR Egger 0.044 2.0×10² 173 Apo-B Small vessel stroke (OR) TG independent 0.73 (0.59; 0.90) 0.003 MR Egger 0.014 9.1×10¹ 137 Apo-B Small vessel stroke (OR) LDL-C & HDL-C & TG independent 0.84 (0.39; 1.84) 0.672 IVW 0.003 6.3 241 Apo-B cIMT (mm) Total 0.02 (0.01; 0.02) < 0.001 IVW < 0.001 4.2×10⁵ 95 Apo-B cIMT (mm) LDL-C independent -0.01 (-0.02; -0.00) 0.033 IVW < 0.001 3.4×10⁴ 138 Apo-B cIMT (mm) HDL-C independent 0.01 (0.01; 0.02) < 0.001 IVW < 0.001 4.3×10⁵ 168 Apo-B cIMT (mm) TG independent 0.03 (0.02; 0.03) < 0.001 IVW 0.008 1.4×10⁵ 138 Apo-B cIMT (mm) LDL-C & HDL-C & TG independent 0.04 (0.02; 0.06) < 0.001 IVW < 0.001 6.9×10³ 241 Apo-B Carotid plaque (OR) Total 1.35 (1.25; 1.46) < 0.001 IVW 0.025 6.7×10² 89 Apo-B Carotid plaque (OR) LDL-C independent 0.99 (0.74; 1.32) 0.922 MR Egger 0.050 4.5×10¹ 133 Apo-B Carotid plaque (OR) HDL-C independent 1.35 (1.25; 1.45) < 0.001 IVW 0.003 7.3×10² 163 Apo-B Carotid plaque (OR) TG independent 1.40 (1.22; 1.60) < 0.001 IVW 0.029 2.0×10² 125 Apo-B Carotid plaque (OR) LDL-C & HDL-C & TG independent 2.76 (1.54; 4.93) < 0.001 IVW 0.006 1.1×10¹ 231 Apo-B Glucose (mmol/l) Total 0.02 (-0.01; 0.06) 0.157 MR Egger 0.002 3.2×10³ 90 Apo-B Glucose (mmol/l) LDL-C independent -0.01 (-0.05; 0.04) 0.765 IVW 0.008 2.0×10³ 134 Apo-B Glucose (mmol/l) HDL-C independent -0.00 (-0.02; 0.01) 0.517 IVW < 0.001 2.6×10⁴ 159 Apo-B Glucose (mmol/l) TG independent -0.02 (-0.04; 0.01) 0.163 IVW < 0.001 8.3×10³ 135 Apo-B Glucose (mmol/l) LDL-C & HDL-C & TG independent -0.06 (-0.15; 0.03) 0.215 MR Egger < 0.001 4.3×10² 236 Apo-B HbA1c (mmol/mol) Total -0.13 (-0.19; -0.07) < 0.001 IVW < 0.001 9.4×10² 86 Apo-B HbA1c (mmol/mol) LDL-C independent -0.28 (-0.50; -0.07) 0.011 IVW < 0.001 8.1×10¹ 135 Apo-B HbA1c (mmol/mol) HDL-C independent -0.13 (-0.20; -0.07) < 0.001 IVW < 0.001 9.2×10² 151 Apo-B HbA1c (mmol/mol) TG independent -0.10 (-0.21; 0.01) 0.078 IVW < 0.001 3.1×10² 129 Apo-B HbA1c (mmol/mol) LDL-C & HDL-C & TG independent -0.40 (-0.88; 0.09) 0.107 MR Egger < 0.001 1.6×10¹ 232 Apo-B T2DM (OR) Total 1.00 (0.93; 1.07) 0.987 MR Egger < 0.001 7.8×10² 82 Apo-B T2DM (OR) LDL-C independent 1.05 (0.94; 1.16) 0.404 MR Egger < 0.001 3.4×10² 122 Apo-B T2DM (OR) HDL-C independent 0.94 (0.92; 0.97) < 0.001 IVW < 0.001 5.0×10³ 144 Apo-B T2DM (OR) TG independent 0.89 (0.85; 0.94) < 0.001 IVW < 0.001 1.4×10³ 111 Apo-B T2DM (OR) LDL-C & HDL-C & TG independent 0.87 (0.72; 1.06) 0.176 IVW < 0.001 9.8×10¹ 212 Apo-B CRP (mg/L) Total 0.02 (-0.02; 0.07) 0.289 IVW < 0.001 1.9×10³ 83 Apo-B CRP (mg/L) LDL-C independent 0.59 (0.41; 0.76) < 0.001 IVW < 0.001 1.2×10² 116 Apo-B CRP (mg/L) HDL-C independent 0.06 (0.01; 0.11) 0.014 IVW < 0.001 1.8×10³ 144 Apo-B CRP (mg/L) TG independent -0.19 (-0.29; -0.10) < 0.001 MR Egger < 0.001 4.0×10² 121 Apo-B CRP (mg/L) LDL-C & HDL-C & TG independent 0.70 (0.36; 1.04) < 0.001 IVW < 0.001 3.4×10¹ 223 Apo-B SBP (mmHg) Total 0.45 (0.10; 0.81) 0.012 MR Egger < 0.001 3.0×10¹ 78 Apo-B SBP (mmHg) LDL-C independent -0.36 (-0.89; 0.17) 0.180 IVW < 0.001 1.4×10¹ 107 Apo-B SBP (mmHg) HDL-C independent 0.39 (0.18; 0.61) < 0.001 MR Egger < 0.001 8.0×10¹ 138 Apo-B SBP (mmHg) TG independent 0.14 (-0.10; 0.38) 0.256 IVW < 0.001 6.5×10¹ 113 Apo-B SBP (mmHg) LDL-C & HDL-C & TG independent 0.12 (-0.88; 1.11) 0.815 IVW < 0.001 3.9 197 Apo-B DBP (mmHg) Total 0.03 (-0.06; 0.11) 0.526 IVW < 0.001 5.7×10² 76 Apo-B DBP (mmHg) LDL-C independent 0.09 (-0.18; 0.37) 0.506 IVW < 0.001 4.9×10¹ 111 Apo-B DBP (mmHg) HDL-C independent -0.03 (-0.11; 0.06) 0.531 IVW < 0.001 5.8×10² 135 Apo-B DBP (mmHg) TG independent -0.22 (-0.37; -0.07) 0.004 IVW < 0.001 1.7×10² 109 Apo-B DBP (mmHg) LDL-C & HDL-C & TG independent -0.37 (-0.97; 0.24) 0.232 IVW < 0.001 1.1×10¹ 198 Apo-B PBL (OR) Total 1.12 (0.92; 1.35) 0.262 IVW 0.002 1.1×10² 48 Apo-B PBL (OR) LDL-C independent 1.36 (0.85; 2.18) 0.197 IVW 0.015 1.7×10¹ 66 Apo-B PBL (OR) HDL-C independent 1.08 (0.89; 1.32) 0.411 IVW 0.014 1.0×10² 85 Apo-B PBL (OR) TG independent 1.00 (0.72; 1.39) 0.993 IVW 0.002 3.5×10¹ 69 Apo-B PBL (OR) LDL-C & HDL-C & TG independent 1.03 (0.19; 5.45) 0.975 IVW 0.007 1.4 114 Apo-B BUN (mg/dl) Total -0.01 (-0.02; 0.00) 0.266 MR Egger < 0.001 3.3×10⁴ 90 Apo-B BUN (mg/dl) LDL-C independent -0.01 (-0.02; 0.00) 0.149 IVW < 0.001 1.9×10⁴ 130 Apo-B BUN (mg/dl) HDL-C independent -0.00 (-0.01; 0.01) 0.941 MR Egger < 0.001 9.1×10⁴ 155 Apo-B BUN (mg/dl) TG independent 0.00 (-0.00; 0.01) 0.225 IVW < 0.001 8.1×10⁴ 133 Apo-B BUN (mg/dl) LDL-C & HDL-C & TG independent 0.00 (-0.02; 0.03) 0.752 IVW < 0.001 4.5×10³ 230 Apo-B eGFR (SD of log(eGFR)) Total 0.00 (-0.00; 0.00) 0.359 IVW < 0.001 1.7×10⁶ 88 Apo-B eGFR (SD of log(eGFR)) LDL-C independent 0.01 (0.00; 0.01) 0.003 IVW < 0.001 1.2×10⁵ 127 Apo-B eGFR (SD of log(eGFR)) HDL-C independent 0.00 (-0.00; 0.00) 0.580 IVW < 0.001 1.6×10⁶ 155 Apo-B eGFR (SD of log(eGFR)) TG independent 0.00 (-0.00; 0.00) 0.830 IVW < 0.001 5.4×10⁵ 125 Apo-B eGFR (SD of log(eGFR)) LDL-C & HDL-C & TG independent 0.00 (-0.01; 0.01) 0.603 MR Egger < 0.001 2.9×10⁴ 225 Apo-B CKD (OR) Total 0.98 (0.94; 1.02) 0.419 IVW 0.018 2.3×10³ 91 Apo-B CKD (OR) LDL-C independent 0.94 (0.81; 1.07) 0.344 IVW 0.013 2.0×10² 135 Apo-B CKD (OR) HDL-C independent 0.98 (0.95; 1.02) 0.439 IVW 0.006 2.4×10³ 162 Apo-B CKD (OR) TG independent 0.96 (0.90; 1.03) 0.286 IVW 0.002 7.7×10² 135 Apo-B CKD (OR) LDL-C & HDL-C & TG independent 1.00 (0.74; 1.35) 0.999 IVW < 0.001 4.2×10¹ 238 Apo-B IBD (OR) Total 1.04 (0.87; 1.24) 0.659 MR Egger 0.006 1.2×10² 95 Apo-B IBD (OR) LDL-C independent 0.64 (0.49; 0.84) < 0.001 IVW 0.007 5.4×10¹ 136 Apo-B IBD (OR) HDL-C independent 1.06 (0.98; 1.14) 0.127 IVW 0.011 7.4×10² 167 Apo-B IBD (OR) TG independent 1.15 (1.01; 1.30) 0.035 IVW < 0.001 2.4×10² 135 Apo-B IBD (OR) LDL-C & HDL-C & TG independent 0.35 (0.20; 0.62) < 0.001 IVW < 0.001 1.2×10¹ 241 Apo-B UC (OR) Total 1.00 (0.90; 1.10) 0.971 IVW 0.051 3.7×10² 96 Apo-B UC (OR) LDL-C independent 0.53 (0.37; 0.76) < 0.001 IVW 0.075 2.9×10¹ 136 Apo-B UC (OR) HDL-C independent 1.03 (0.94; 1.13) 0.554 IVW 0.006 4.7×10² 170 Apo-B UC (OR) TG independent 1.09 (0.92; 1.30) 0.324 IVW 0.079 1.3×10² 137 Apo-B UC (OR) LDL-C & HDL-C & TG independent 0.40 (0.20; 0.82) 0.012 IVW 0.008 7.6 241 Apo-B CD (OR) Total 1.12 (1.00; 1.25) 0.045 IVW 0.081 3.2×10² 93 Apo-B CD (OR) LDL-C independent 1.15 (0.77; 1.70) 0.501 IVW 0.097 2.4×10¹ 134 Apo-B CD (OR) HDL-C independent 1.11 (1.00; 1.23) 0.051 IVW 0.111 3.5×10² 167 Apo-B CD (OR) TG independent 1.06 (0.89; 1.26) 0.524 IVW 0.008 1.3×10² 135 Apo-B CD (OR) LDL-C & HDL-C & TG independent 0.26 (0.12; 0.56) < 0.001 IVW 0.040 6.2 240 Apo-B Arthritis (OR) Total 0.87 (0.78; 0.96) 0.008 IVW 0.131 3.5×10² 77 Apo-B Arthritis (OR) LDL-C independent 0.80 (0.56; 1.13) 0.202 IVW 0.067 3.2×10¹ 113 Apo-B Arthritis (OR) HDL-C independent 0.88 (0.79; 0.97) 0.008 IVW 0.191 4.0×10² 135 Apo-B Arthritis (OR) TG independent 1.19 (0.96; 1.46) 0.113 MR Egger 0.546 8.7×10¹ 111 Apo-B Arthritis (OR) LDL-C & HDL-C & TG independent 0.67 (0.30; 1.50) 0.330 MR Egger 0.158 6.0 198 Apo-B ALS (OR) Total 0.94 (0.78; 1.13) 0.486 MR Egger 0.720 1.1×10² 93 Apo-B ALS (OR) LDL-C independent 1.29 (1.00; 1.65) 0.046 IVW 0.477 6.3×10¹ 139 Apo-B ALS (OR) HDL-C independent 1.05 (0.99; 1.13) 0.124 IVW 0.433 8.3×10² 171 Apo-B ALS (OR) TG independent 1.10 (0.97; 1.24) 0.128 IVW 0.030 2.6×10² 135 Apo-B ALS (OR) LDL-C & HDL-C & TG independent 0.87 (0.50; 1.52) 0.624 IVW 0.043 1.2×10¹ 244 Apo-B MS (OR) Total 0.74 (0.52; 1.06) 0.106 MR Egger 0.346 3.0×10¹ 25 Apo-B MS (OR) LDL-C independent 0.72 (0.41; 1.26) 0.248 MR Egger 0.136 1.2×10¹ 27 Apo-B MS (OR) HDL-C independent 1.07 (0.94; 1.20) 0.299 IVW 0.045 2.6×10² 34 Apo-B MS (OR) TG independent 1.20 (0.97; 1.49) 0.101 IVW 0.269 8.1×10¹ 31 Apo-B MS (OR) LDL-C & HDL-C & TG independent 7.29 (1.92; 27.70) 0.004 IVW 0.007 2.2 40 Apo-B Alzheimer (OR) Total 1.02 (1.01; 1.03) < 0.001 IVW < 0.001 3.0×10⁴ 79 Apo-B Alzheimer (OR) LDL-C independent 0.98 (0.94; 1.03) 0.500 IVW < 0.001 1.9×10³ 93 Apo-B Alzheimer (OR) HDL-C independent 1.04 (1.02; 1.06) < 0.001 MR Egger 0.013 1.0×10⁴ 137 Apo-B Alzheimer (OR) TG independent 1.04 (1.02; 1.06) < 0.001 IVW < 0.001 9.0×10³ 121 Apo-B Alzheimer (OR) LDL-C & HDL-C & TG independent 0.72 (0.66; 0.78) < 0.001 IVW < 0.001 5.1×10² 201 Apo-B Parkinson (OR) Total 0.98 (0.78; 1.24) 0.887 MR Egger 0.264 6.9×10¹ 92 Apo-B Parkinson (OR) LDL-C independent 1.11 (0.84; 1.47) 0.475 IVW 0.392 4.8×10¹ 135 Apo-B Parkinson (OR) HDL-C independent 0.89 (0.77; 1.02) 0.098 MR Egger 0.061 2.0×10² 163 Apo-B Parkinson (OR) TG independent 0.99 (0.82; 1.19) 0.878 MR Egger 0.005 1.1×10² 134 Apo-B Parkinson (OR) LDL-C & HDL-C & TG independent 1.67 (0.90; 3.13) 0.105 IVW 0.005 9.9 238 Apo-B Pancreatic cancer (OR) Total 0.53 (0.30; 0.94) 0.031 MR Egger 0.295 1.1×10¹ 93 Apo-B Pancreatic cancer (OR) LDL-C independent 0.73 (0.32; 1.66) 0.455 MR Egger 0.016 5.7 141 Apo-B Pancreatic cancer (OR) HDL-C independent 0.94 (0.74; 1.20) 0.621 IVW 0.050 6.4×10¹ 167 Apo-B Pancreatic cancer (OR) TG independent 0.86 (0.54; 1.36) 0.510 MR Egger 0.432 1.8×10¹ 140 Apo-B Pancreatic cancer (OR) LDL-C & HDL-C & TG independent 0.20 (0.03; 1.23) 0.082 IVW < 0.001 1.2 244 Apo-B Colon cancer (OR) Total 0.97 (0.74; 1.26) 0.796 MR Egger 0.255 5.4×10¹ 93 Apo-B Colon cancer (OR) LDL-C independent 1.48 (1.06; 2.08) 0.023 IVW 0.017 3.3×10¹ 138 Apo-B Colon cancer (OR) HDL-C independent 1.15 (1.04; 1.26) 0.005 IVW 0.020 4.3×10² 168 Apo-B Colon cancer (OR) TG independent 1.08 (0.92; 1.28) 0.358 IVW 0.036 1.4×10² 140 Apo-B Colon cancer (OR) LDL-C & HDL-C & TG independent 1.49 (0.70; 3.19) 0.299 IVW < 0.001 6.7 244 Apo-B Rectal cancer (OR) Total 1.31 (0.93; 1.85) 0.124 MR Egger 0.156 3.2×10¹ 93 Apo-B Rectal cancer (OR) LDL-C independent 0.69 (0.44; 1.09) 0.111 IVW 0.472 1.9×10¹ 140 Apo-B Rectal cancer (OR) HDL-C independent 1.21 (0.99; 1.49) 0.067 MR Egger 0.203 8.9×10¹ 166 Apo-B Rectal cancer (OR) TG independent 1.32 (1.01; 1.74) 0.045 MR Egger 0.379 5.1×10¹ 140 Apo-B Rectal cancer (OR) LDL-C & HDL-C & TG independent 0.76 (0.27; 2.11) 0.592 IVW 0.313 3.6 245 Apo-B Melanoma (OR) Total 0.94 (0.78; 1.13) 0.531 MR Egger 0.025 1.1×10² 93 Apo-B Melanoma (OR) LDL-C independent 1.13 (0.86; 1.48) 0.368 IVW 0.138 5.3×10¹ 140 Apo-B Melanoma (OR) HDL-C independent 1.05 (0.98; 1.13) 0.140 IVW < 0.001 7.7×10² 166 Apo-B Melanoma (OR) TG independent 0.91 (0.79; 1.06) 0.235 MR Egger < 0.001 1.8×10² 140 Apo-B Melanoma (OR) LDL-C & HDL-C & TG independent 1.22 (0.68; 2.18) 0.511 IVW < 0.001 1.1×10¹ 242 Apo-B Lung cancer (OR) Total 0.96 (0.70; 1.32) 0.813 MR Egger 0.392 3.8×10¹ 93 Apo-B Lung cancer (OR) LDL-C independent 1.24 (0.79; 1.93) 0.351 IVW 0.080 1.9×10¹ 140 Apo-B Lung cancer (OR) HDL-C independent 0.87 (0.77; 0.97) 0.013 IVW 0.031 3.0×10² 170 Apo-B Lung cancer (OR) TG independent 0.83 (0.68; 1.02) 0.072 IVW 0.035 9.6×10¹ 141 Apo-B Lung cancer (OR) LDL-C & HDL-C & TG independent 1.03 (0.40; 2.64) 0.953 IVW 0.007 4.3 247