Table 2.
Relative abundance of A. lacustris related reads in metagenomic and SSU amplicon datasets.
The project titles and type of environments of the SRA and VAMPS datasets can be found in Supplementary Table 5.
| Dataset | Type | Size (n) | Recruited reads (n) | Correct for completeness (n) | Relative abundance (%) |
|---|---|---|---|---|---|
| Damariscotta (Spring) | 454 metagenome | 343,495 | 14 | 29 | 0.008 |
| Damariscotta (Summer) | 454 metagenome | 399,994 | 15 | 31 | 0.008 |
| Mendota (Spring) | 454 metagenome | 484,350 | 17 | 35 | 0.007 |
| Mendota (Summer) | 454 metagenome | 562,100 | 11 | 23 | 0.004 |
| Sparkling (Spring) | 454 metagenome | 137,643 | 4 | 8 | 0.006 |
| Sparkling (Summer) | 454 metagenome | 53,174 | 1 | 2 | 0.004 |
| Ekoln | 454 metagenome | 324,764 | 18 | 37 | 0.011 |
| Erken | 454 metagenome | 665,775 | 46 | 95 | 0.014 |
| Vattern | 454 metagenome | 332,583 | 18 | 37 | 0.011 |
| SRR3059661 | SSU amplicon (SRA) | 528,037 | 13 | - | 0.002 |
| SRR3059671 | SSU amplicon (SRA) | 435,378 | 8 | - | 0.002 |
| ERR2045301 | SSU amplicon (SRA) | 1,998 | 4 | - | 0.2 |
| ERR2045481 | SSU amplicon (SRA) | 1,154 | 1 | - | 0.087 |
| ERR2045551 | SSU amplicon (SRA) | 866 | 1 | - | 0.115 |
| ERR2046131 | SSU amplicon (SRA) | 604 | 1 | - | 0.166 |
| ERR2046491 | SSU amplicon (SRA) | 2,139 | 1 | - | 0.047 |
| ERR2046511 | SSU amplicon (SRA) | 673 | 1 | - | 0.149 |
| ERR2046901 | SSU amplicon (SRA) | 3,946 | 1 | - | 0.025 |
| ERR2047021 | SSU amplicon (SRA) | 919 | 2 | - | 0.218 |
| ERR2047431 | SSU amplicon (SRA) | 3,074 | 1 | - | 0.033 |
| RARE_MSF_Bv6v41 | SSU amplicon (VAMPS) | 216,537 | 7 | - | 0.003 |
| RARE_NFF_Bv6v41 | SSU amplicon (VAMPS) | 307,126 | 22 | - | 0.007 |
| RARE_WHF_Bv6v41 | SSU amplicon (VAMPS) | 440,607 | 2 | - | 0.0005 |
1
Study titles and environment type can be found in Supplementary Table 5