Table 4.
Pathway Name | Pathway ID | # genes | p | q-value | p(minusbest)* |
---|---|---|---|---|---|
IL6-mediated signalling events | NCI:62 | 82 | 1.33×10−11 | 9.17×10−8 | 0.256 |
TGF-beta receptor signalling | NCI:95 | 44 | 4.90×10−11 | 1.69×10−7 | 0.508 |
Defense response to virus | GO:51607 | 147 | 7.02×10−8 | 1.62×10−4 | 0.31 |
Respiratory electron transport | REACT:1019 | 81 | 1.98×10−7 | 3.41×10−4 | 0.02 |
Organonitrogen compound catabolic process | GO:1901565 | 893 | 9.08×10−7 | 1.05×10−3 | 3.13×10−5 |
Transmembrane transporter activity | GO:22857 | 902 | 9.10×10−7 | 1.05×10−3 | 8.85×10−4 |
Citric acid (TCA) cycle and respiratory electron transport | REACT:1240 | 118 | 1.16×10−6 | 1.15×10−3 | 0.057 |
Carbohydrate derivative catabolic process | GO:1901136 | 747 | 2.19×10−6 | 1.61×10−3 | 3.34×10−4 |
Ligand-gated ion channel activity | GO:15276 | 136 | 2.33×10−6 | 1.61×10−3 | 3.41×10−4 |
Methyltransferase activity | GO:8168 | 201 | 3.19×10−6 | 2.00×10−3 | 0.022 |
Small thymus | MGI:706 | 199 | 4.15×10−6 | 2.39×10−3 | 0.488 |
Transmembrane transport | GO:55085 | 1124 | 5.22×10−6 | 2.44×10−3 | 0.0028 |
Ion gated channel activity | GO:22839 | 300 | 5.29×10−6 | 2.44×10−3 | 4.18×10−4 |
p-value for pathway enrichment after omitting the most significant sample
Pathways which are robustly enriched (i.e. those with p(minus best)<0.05) are shown in bold.