Table 1. Features of the new P. vivax assemblies against Salvador-I.
| Genome features | PvP01 a | PvC01 | PvT01 | Salvador-I b |
|---|---|---|---|---|
| Nuclear genome | ||||
| Assembly size (Mb) | 29.0 | 30.2 | 28.9 | 26.8 |
| Coverage (fold) | 212 | 56 | 89 | 10 |
| G + C content (%) | 39.8 | 39.2 | 39.7 | 42.3 |
| No. scaffolds
assigned to chrom. |
14 | 14 | 14 | 30 |
| No. unassigned
scaffolds |
226 | 529 | 359 | 2745 |
| No. genes c | 6,642 | 6,690 | 6,464 | 5,433 |
| No. pir genes | 1,212 | 1,061 | 867 | 346 |
| Mitochondrial genome d | ||||
| Assembly size (bp) | 5,989 | - | - | 5,990 |
| G + C content (%) | 30.5 | - | - | 30.5 |
| Apicoplast genome | ||||
| Assembly size (kb) | 29.6 | 27.6 e | 6.6 f | 5.1 g |
| G + C content (%) | 13.3 | 12.7 | 19.7 | 17.1 |
| No. genes | 30 | 3 | 0 | 0 |
a Genome version 1.09.2016
b Published reference sequence 14
c Including pseudogenes and partial genes, excluding non-coding RNA genes.
d Mitochdondrial genome is not present in PvT01 and PvC01
e scaffold PvC01_00_191
f scaffold PvT01_00_162
g Partial apicoplast sequence of Salavador-I reference assembly has been published (scaffolds AAKM01000417, AAKM01000371)