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. Author manuscript; available in PMC: 2017 Mar 16.
Published in final edited form as: Wellcome Open Res. 2016 Dec 9;1:24. doi: 10.12688/wellcomeopenres.10046.1

Table 1. Acquisition times and cross-link densities at different FDR rate.

Target protein MS acquisition
time		 Links per residue
at 5% FDR (number
of residue pairs)		 Links per residue at
10% FDR (number
of residue pairs)		 Links per residue at
20% FDR (number
of residue pairs)
HSA (585 AA) 12 days 0.85 (500) 1.51 (881) 2.56 (1495)
Tx781 (420 AA) 4.7 days 0.73 (305) 1.06 (444) 1.35 (565)
Tx808 (418 AA) 4.4 days 0.63 (265) 0.68 (286) 0.82 (342)
Tx767 (318 AA) 4.0 days 1.20 (381) n.d. 2.26 (718)
Tx812 (204 AA) 3.8 days 0.99 (201) 1.30 (265) 1.77 (360)