Table 2.
Sample ID | Epitope 1 | Epitope 2 | Epitope 3 | Epitope 4 | Epitope 5 | Epitope 6 |
---|---|---|---|---|---|---|
BD18 | TNEELKKLGMV (V16) | EGLDMEALF (V12) | KTSKGMTKVGR (V15) | FGQSIKCVA (V8) | QSIKCVAQH (V7) | KGDVPNPCDW (V10) |
BD19 | SHEELKKLGML (V1) | DGFDRDALF (V1) | KSSHGMGKVGK (V1) | FAQSLVCVL (V1) | QSLVCVLMK (V1) | KTSIPNPCKW (V1) |
BD20, 21 | SDNELDTLGLL (V4) | PDLDKNRLF (V2) | LTSHGMGKIGR (V3) | LAASIKCVS (V3) | ASIKCVSQH (V20)1 | KPSIPNPCDW (V19) |
BD24 | SDSELETLGML (V26)1 | PDPDKQRLF (V8) | LTSKAMSTVGK (V11) | FAQSIYCVA (V21) | QSIYCVANN (V10) | KGDVPNPCQW (V8) |
BD25 | SDDELRKLGML (V15) | DGFDRDALF (V1) | KSSHGMGKVGR (V14) | FVESIMCVI (V14) | ESIMCVIKK (V14) | KEDVPNPCDW (V3) |
CD16 | SHEELKKLGML (V1) | DGFDRDALF (V1) | KSSHGMGKVGK (V1) | FAQSLVCVL (V1) | QSLVCVLMK (V1) | KTSIPNPCKW (V1) |
CD17 | SDNELDTLGLL (V4) | PDLDKNRLF (V2) | LTSHGMGKIAR (V25) | LAASIKCVS (V3) | ASIKCVSHH (V3) | KPSVPNPCDW (V2) |
CD28 | TEEELKKMGMV (V27) | EGFDKEKLF (V22) | KSSKSMGIVGR (V24) | FVQSIMCVI (V20) | QSIMCVINK (V21) | VNDIPNPCKW (20) |
Newly identified epitope sequences are in boldface.
Epitope variant number is found in ( ). Original epitope variant numbers are defined in Pelle et al., 2011. Epitope variant numbers are separate from protein variant numbers.