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. Author manuscript; available in PMC: 2019 Aug 20.
Published in final edited form as: ISME J. 2019 Feb 20;13(6):1589–1601. doi: 10.1038/s41396-019-0371-6

Figure 4.

Figure 4

The richness (a,c) and Shannon diversity (b,d) values for the reaction-type annotated RNA data binned into Enzyme Commission (EC) number (a,b) and sub-subclass (c,d) for TP1 (solid) and TP2 (dashed) with a fractional abundance cutoff of 10-7. These diversity values were calculated for each reactor using the rtk v0.2.5.4 package in R v3.5.1 for (a,c) 10 bootstrap sub-selections of the annotations or (b,d) the full data. The lines trace the (a,c) bootstrap mean or (b,d) calculated value.