Table 1. Zoonoses included in the review, with details of species and serovars excluded where appropriate.
| Pathogen | Species, subspecies, and serovars excluded | Pathogen type13 |
|---|---|---|
| Alphaviruses | All species excluded with the exception of Eastern equine encephalitis virus (EEEV) complex, Venezuelan equine encephalitis (VEEV) complex, and Western equine encephalitis (WEEV) complex | Virus |
| Anaplasma spp. | - | Bacteria |
| Aphthoviruses | All species excluded with the exception of Foot-and-mouth disease virus | Virus |
| Avulaviruses | All species excluded with the exception of Newcastle disease virus | Virus |
| Babesia spp. | - | Protozoa |
| Bacillus antrhracis | - | Bacteria |
| Bartonella spp. | B. bacilliformis and B. quintana excluded | Bacteria |
| Borrelia spp. | B. recurrentis excluded | Bacteria |
| Bovine spongiform encephalopathy | - | Prion |
| Brucella spp. | - | Bacteria |
| Burkholderia spp. | B. cepacia complex and B. pseudomallei excluded | Bacteria |
| Campylobacter spp. | - | Bacteria |
| Chlamydia spp. | All species excluded with the exception of C. psittaci | Bacteria |
| Coxiella burnetii | - | Bacteria |
| Cryptosporidium spp. | C. hominis excluded | Protozoa |
| Ebolavirus | - | Virus |
| Echinococcus spp. | - | Helminth |
| Ehrlichia spp. | - | Bacteria |
| Enteroviruses | All species excluded with the exception of Swine vesicular disease virus | Virus |
| Escherichia spp. | All species excluded with the exception of Shiga-toxin producing E. coli | Bacteria |
| Flaviviruses | All species excluded with the exception of Japanese encephalitis virus (JEV), West Nile virus (WNV), and Tick-borne-encephalitis virus. | Virus |
| Francisella spp. | All species excluded with the exception of F. tularensis | Bacteria |
| Hantavirus | - | Virus |
| Henipaviruses | - | Virus |
| Lassa virus | - | Virus |
| Leishmania spp. | L. donovani excluded if detected in India | Protozoa |
| Leptospira spp. | - | Bacteria |
| Listeria spp. | - | Bacteria |
| Lyssavirus | All species excluded with the exception of Rabies virus | Virus |
| Marburg virus | - | Virus |
| Mycobacterium | All species excluded with the exception of M. bovis and M. avis | Bacteria |
| Nairovirus | All species excluded with the exception of Crimean-Congo haemorrhagic fever virus | Virus |
| Orientia1 | - | Bacteria |
| Orthopox viruses | All species excluded with the exception of Cowpox virus, Monkeypox virus, and Vaccinia virus | Virus |
| Pasteurella spp. | - | Bacteria |
| Phleboviruses | All species excluded with the exception of Rift Valley fever (RVF) virus | Virus |
| Rickettsia spp.2 | R. prowazekii excluded | Bacteria |
| Salmonella spp. | All species, subspecies, and serovars excluded with the exception of nontyphoidal Salmonella serovars | Bacteria |
| Schistosoma spp. | S. haematobium, S. intercalatum, and S. mekongi.excluded | Helminth |
| Streptobacillus spp. | - | Bacteria |
| Streptococcus spp. | All species excluded with the exception of S. canis, S. suis, S. equi, and S. iniae | Bacteria |
| Taenia spp. | Helminth | |
| Toxocara | Helminth | |
| Toxoplasma gondii | - | Protozoa |
| Trichinella spp. | - | Helminth |
| Trypanosoma spp. | All species excluded with the exception of T. brucei rhodesiense and T. cruzi | Protozoa |
| Varicelloviruses | All species excluded with the exception of Pseudorabies virus | Virus |
| Vesiculoviruses | All species excluded with the exception of Vesicular Stomatitis virus | Virus |
| Yersinia spp. | All species excluded with the exception of Y. pestis, Y. enterocolitica and Y. pseudotuberculosis | Bacteria |
1
Orientia was covered by search syntax for Rickettsia.
2
For data extraction, data on Rickettsia were classified as Rickettsia (SFGR) or Rickettsia (TGR) where the data resolution allowed. When details on the species of Rickettsia were not given, these data were classified as Rickettsia spp.