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. Author manuscript; available in PMC: 2020 Oct 7.
Published in final edited form as: Mol Cell. 2020 Aug 26;80(1):102–113.e6. doi: 10.1016/j.molcel.2020.08.003
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-Strep-tag II antibody Abcam Cat#ab76949; RRID:AB_1524455
Anti-Histone H3 antibody Abcam Cat#ab10799; RRID:AB_470239
Anti-GFP from mouse IgG1k (used for YFP detection) Sigma Cat#11814460001; RRID:AB_390913
GFP antibody rabbit polyclonal (used for YFP detection) Chromotek Cat#PABG1; RRID:AB_2749857
GAPDH (14C10) Rabbit mAb Cell Signaling Cat#2118; RRID:AB_561053
Anit-H1.10 antibody Abcam Cat#ab11079; RRID:AB_2295032
Anti-SPRTN mAB (6F2) Stingele lab Clone6F2
Goat Anti-Rat Immunoglobulins/HRP Sigma Cat#A9037; RRID:AB_258429
Goat Anti-Mouse Immunoglobulins/HRP Dako Cat#P0447; RRID:AB_2617137
Swine Anti-Rabbit Immunoglobulins/HRP Dako Cat#P0399; RRID:AB_2617141
Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 Thermo Scientific Cat#A-11001; RRID:AB_2534069
Bacterial and Virus Strains
BL21(DE3) Thermo Scientific Cat#C600003
Chemicals, Peptides, and Recombinant Proteins
16% Formaldehyde (w/v), Methanol-free Thermo Scientific Cat#28906
InstantBlue Sigma Cat#ISB1L
Doxycycline Hyclate Sigma Cat#D9891
ProLong Gold Antifade Reagent Thermo Fisher Cat#P10144
DAPI Solution Thermo Fisher Cat#62248
4x NuPAGE LDS sample buffer Thermo Scientific Cat#NP0007
Phusion HF enzyme NEB Cat#M0530
UltraPure BSA Thermo Scientific Cat#AM2616
Histone H1° Human NEB Cat#M2501S
Protein G BioVision Cat#6510
Lipofectamine 2000 Thermo Scientific Cat#11668030
IGEPAL Sigma Cat#I8896
Biotin IBA Lifesciences Cat#2-1016-005
Pefabloc SC Merck Cat#11585916001
TCEP ROTH Cat#HN95.2
cOmplete EDTA-free protease inhibitor cocktail Merck Cat#4693132001
Critical Commercial Assays
proFIRE Amine Coupling Kit Dynamic Biosensors Cat#PF-NH2-1
NucleoSpin® Gel and PCR Clean-up MACHEREY-NAGEL Cat#740609
Quant-iT PicoGreen dsDNA Assay Kit Thermo Scientific Cat#P11496
GeneJET Genomic DNA purification kit Thermo Scientific Cat#K0722
SsoAdvanced Universal SYBR Green Supermix Bio-Rad Cat#172527
Experimental Models: Cell Lines
Human HeLa Flp-In-T-REx The Francis Crick Institute Cell Services N/A
Human HAP1 Thijn Brummelkamp, NKI Amsterdam N/A
Oligonucleotides
Oligonucleotide sequences used in this study are provided in Table S1 N/A N/A
Recombinant DNA
Ds ΦX174 phage DNA RFI NEB Cat#N3021S
Ss ΦX174 phage DNA virion NEB Cat#N3023S
pMAX-GFP LONZA Cat#VDC-1040
pNIC-STREP-ZB-SPRTN-WT This study N/A
pNIC-STREP-ZB-SPRTNEquation (E112Q) This study N/A
pNIC-STREP-ZB-SPRTN-ZBD1* (Y179A_W197A) This study N/A
pNIC-STREP-ZB-SPRTN-ZBD2* (R185A) This study N/A
pNIC-STREP-ZB-SPRTN-BR* (K220A_K221E_G222A_K223A) This study N/A
pNIC-STREP-ZB-SPRTN-EQ-ZBD1* (E112Q_Y179A_W197A) This study N/A
pNIC-STREP-ZB-SPRTN-EQ-ZBD2* (E112Q_R185A) This study N/A
pNIC-STREP-ZB-SPRTN-EQ-BR* (E112Q_K220A_K221E_G222A_K223A) This study N/A
pNIC-STREP-ZB-SPRTN-EQ-ZBD2*-BR*(E112Q_R185A_K220A_K221E_G222A_K223A) This study N/A
pNIC-STREP-ZB-SPRTN-ZBD-BR(aa151-245) This study N/A
pNIC-STREP-ZB-SPRTN-ZBD (aa151-215) This study N/A
pcDNA5-FRT/TO-YFP-SPRTN-WT-Strep Stingele et al., 2016 N/A
pcDNA5-FRT/TO-YFP-SPRTNEquation (E112Q)-Strep Stingele et al., 2016 N/A
pcDNA5-FRT/TO-YFP-SPRTN-ZBD1* (Y179A_W197A)-Strep This study N/A
pcDNA5-FRT/TO-YFP-SPRTN-ZBD2*(R185A)-Strep This study N/A
pcDNA5-FRT/TO-YFP-SPRTN-BR* (K220A_K221E_G222A_K223A)-Strep This study N/A
pOG44 Thermo Scientific Cat#V600520
pBABE-puro Addgene Cat#1764
pBABE-puro-SPRTN-WT-Strep This study N/A
pBABE-puro-SPRTNEquation (E112Q)-Strep This study N/A
pBABE-puro-SPRTN-ZBD1* (Y179A_W197A)-Strep This study N/A
pBABE-puro-SPRTN-ZBD2* (R185A)-Strep This study N/A
Software and Algorithms
Prism 7 GraphPad Software https://www.graphpad.com/
ImageJ NIH https://imagej.net/Fiji/Downloads
Adobe Photoshop CC2018 Adobe https://www.adobe.com/es/products/photoshop.html
Other
HiTrap Heparin HP affinity columns GE Healthcare Cat#17040701
PD-10 Desalting columns GE Healthcare Cat#17085101
Strep-Tactin®XT Superflow®high capacity cartridges IBA Lifesciences Cat#2-4026-001
HiLoad 16/600 Superdex 200 pg column GE Healthcare Cat#GE28-9893-35
10 kDa cutoff Amicon Ultra centrifugal filters Merck Cat#UFC801096
GFP-Trap Magnetic Agarose Chromotek Cat#gtma-10