. Author manuscript; available in PMC: 2009 Jun 8.

Published in final edited form as: AIDS Res Hum Retroviruses. 2009 Mar;25(3):297–303. doi: 10.1089/aid.2008.0208

Table 4.

Individual HLA Alleles Associated with Terminal Branch Lengths

Gene	HLA allele	Coefficient^a	Standard error	p-value	Upper 95% CI	Lower 95% CI	HLA frequency
env	A4301	0.0428	0.0215	0.0470	0.0006	0.0850	0.0321
nef	A3009	0.0435	0.0206	0.0360	0.0029	0.0840	0.0022
	A0214	0.0770	0.0204	<0.001	0.0368	0.1172	0.0039
	A2901	0.0353	0.0179	0.0490	0.0002	0.0705	0.0054
	A2601	0.0364	0.0165	0.0280	0.0039	0.0688	0.0106
	A2402^b	0.0423	0.0162	0.0090	0.0105	0.0741	0.0262
	A4301	0.0528	0.0165	0.0020	0.0204	0.0852	0.0321
	A0205	0.0310	0.0155	0.0460	0.0006	0.0614	0.0346
pol	A6602	0.0315	0.0111	0.0050	0.0096	0.0534	0.0097
	A4301	0.0245	0.0088	0.0060	0.0072	0.0419	0.0321
	A0205	0.0167	0.0083	0.0440	0.0005	0.0330	0.0346
	A3402^c	0.0192	0.0089	0.0320	0.0016	0.0368	0.0490

Representing the average branch length among those without the allele compared to those with the allele.

Linked to both HLA*B07 and HLA*C07, p-value=2.69×10⁻⁷.

Linked to both HLA*B44 and HLA*C04, p-value=6.50×10⁻⁸.