Table 3.

Number of transmitted or non-transmitted minor alleles in 297 CL/P cases (all populations combined) from TDT and estimated odds ratios of transmission, OR(transmission) ignoring parent-of-origin

Gene	No.	SNP name	TDT
			T	NT	χ2	P-value	ORa
PAX7	1	rs766325	97	60	8.72	0.003	1.62
	2	rs880810	55	46	0.80	0.370	1.20
	3	rs618941	101	79	2.69	0.101	1.28
	4	rs553934	99	75	3.31	0.069	1.32
	5	rs545793	127	107	1.71	0.191	1.19
	6	rs624761	70	68	0.29	0.865	1.03
	7	rs609959	44	34	1.28	0.258	1.29
PAX3	1	rs3731858	99	87	0.77	0.379	1.14
	2	rs7565552	63	51	1.26	0.261	1.24
	3	rs1370924	86	82	0.09	0.757	1.05
	4	rs1013262	67	60	0.39	0.534	1.12
	5	rs1965791	115	111	0.07	0.790	1.04
	6	rs6717432	84	70	1.27	0.259	1.20
	7	rs1367411	91	75	1.54	0.214	1.21
	8	rs1367414	135	118	1.14	0.285	1.14
	9	rs7609007	101	101	0.00	1.000	1.00
	10	rs1430662	101	96	1.27	0.722	1.05
	11	rs4674639	121	101	1.80	0.179	1.20
	12	rs930140	126	104	2.10	0.147	1.21
	13	rs7600206	88	71	1.82	0.177	1.24
PAX6	1	rs3026393	118	110	0.28	0.596	1.07
	2	rs644242	71	47	4.88	0.027	1.51
	3	rs667773	71	47	4.88	0.027	1.51
	4	rs2239789	116	110	0.16	0.690	1.05
	5	rs592859	115	80	6.28	0.012	1.44
	6	rs3026354	115	78	7.09	0.008	1.47
	7	rs2071164	114	78	6.75	0.009	1.46
PAX9	1	rs2073241	120	115	0.11	0.744	1.04
	2	rs2073247	117	114	0.04	0.843	1.03
	3	rs2295218	118	116	0.02	0.895	1.02
	4	rs12892031	100	80	2.22	0.136	1.25
	5	rs1955734	105	85	2.11	0.146	1.24
	6	rs8004187	100	84	1.39	0.238	1.19
	7	rs7144276	74	70	1.11	0.738	1.06

T, transmitted; NT, not transmitted; OR, odds ratio.

Shading in the table indicates inferred LD blocks.

^aO (transmission): odds ratio of transmission for the high-risk allele.

Bold values represent results significant at the P<0.05 level.