KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Software and algorithms
C-I-TASSER	This paper	https://zhanglab.ccmb.med.umich.edu/C-I-TASSER/ https://zhanglab.ccmb.med.umich.edu/C-I-TASSER/standalone/C-I-TASSER-1.0.tar.bz2 https://github.com/jlspzw/C-I-TASSER
R	The R Project for Statistical Computing	https://www.r-project.org/
LOMETS	(Wu and Zhang, 2007; Zheng et al., 2019c)	https://zhanglab.ccmb.med.umich.edu/LOMETS/
HMMER	(Eddy, 1998)	http://hmmer.org/
ResTriplet	(Li et al., 2019b)	https://zhanglab.ccmb.med.umich.edu/ResTriplet/
TripletRes	(Li et al., 2021)	https://zhanglab.ccmb.med.umich.edu/TripletRes/
ResPRE	(Li et al., 2019a)	https://zhanglab.ccmb.med.umich.edu/ResPRE/
ResPLM	(Li et al., 2019b; Zheng et al., 2019a)	N/A
NeBcon	(He et al., 2017)	https://zhanglab.ccmb.med.umich.edu/NeBcon/
Pytorch	(Paszke et al., 2017)	https://pytorch.org
DeepMSA	(Zhang et al., 2019)	https://zhanglab.ccmb.med.umich.edu/DeepMSA/
PSSpred	(Yan et al., 2013)	https://zhanglab.ccmb.med.umich.edu/PSSpred/
STRIDE	(Frishman and Argos, 1995)	http://webclu.bio.wzw.tum.de/stride/
SPICKER	(Zhang and Skolnick, 2004b)	https://zhanglab.ccmb.med.umich.edu/SPICKER/
TM-score	(Zhang and Skolnick, 2004a)	https://zhanglab.ccmb.med.umich.edu/TM-score/
TM-align	(Zhang and Skolnick, 2005)	https://zhanglab.ccmb.med.umich.edu/TM-align/
REMO	(Li and Zhang, 2009)	https://zhanglab.ccmb.med.umich.edu/REMO/
FASPR	(Huang et al., 2020)	https://zhanglab.ccmb.med.umich.edu/FASPR/
FG-MD	(Zhang et al., 2011)	https://zhanglab.ccmb.med.umich.edu/FG-MD/
ThreaDom	(Xue et al., 2013)	https://zhanglab.ccmb.med.umich.edu/ThreaDom/
DEMO	(Zhou et al., 2019)	https://zhanglab.ccmb.med.umich.edu/DEMO/
I-TASSER	(Wu et al., 2007; Yang et al., 2015)	https://zhanglab.ccmb.med.umich.edu/I-TASSER/
CNS	(Brunger et al., 1998)	https://www.mrc-lmb.cam.ac.uk/public/xtal/doc/cns/cns_1.3/tutorial/text.html
trRosetta	(Yang et al., 2020)	https://github.com/gjoni/trRosetta