Table 2.

Results from the meQTL analysis in whole blood in the GALA II and SAGE studies for genome-wide significant hit in the discovery and two SNPs that were replicated.

			Mexican Americans			Puerto Ricans			African Americans			Meta-analysis
SNP-CpG pair	Position (hg19)	Closest genes	Coef	SE	P	Coef	SE	P	Coef	SE	P	Coef	SE	P	Cochran’s Q P	Storey q
rs943126-cg26800131	91574784	KIF20B	−0.21	0.11	2.99E-04	−0.07	0.04	6.99E-02	−0.07	0.04	8.87E-02	−0.18	0.10	1.85E-06	4.45E-03	9.95E-04
rs943126-cg14920044	91296311	SLC16A12	0.09	0.05	9.77E-02	0.24	0.06	1.68E-05	0.12	0.06	4.68E-02	0.15	0.03	4.61E-06	1.24E-01	1.24E-03
rs943126-cg20654695	91444521	KIF20B/PANK1	−0.10	0.08	2.12E-01	−0.06	0.04	9.04E-02	−0.15	0.03	2.04E-05	−0.10	0.02	9.96E-06	1.98E-01	1.79E-03
rs943126-cg25770176	91405685	PANK1	−0.09	0.03	1.43E-03	0.00	0.09	2.78E-01	−0.07	0.02	3.00E-03	−0.07	0.02	1.86E-05	1.49E-01	2.50E-03
rs12091010-cg05612904	101491636	DPH5	−0.07	0.04	6.99E-02	−0.21	0.11	2.99E-04	−0.09	0.04	2.72E-02	−0.10	0.02	2.31E-05	9.52E-02	1.20E-02
rs943126-cg00475140	91404454	PANK1	−0.21	0.07	1.39E-03	−0.13	0.08	1.05E-01	−0.19	0.09	3.19E-02	−0.18	0.04	4.28E-05	5.25E-01	4.60E-03
rs943126-cg15620114	91296457	SLC16A12	0.09	0.08	2.64E-01	0.27	0.09	3.87E-03	0.20	0.08	7.76E-03	0.18	0.05	1.53E-04	5.70E-01	1.32E-02
rs943126-cg04957662	91411382	KIF20B/PANK1	−0.34	0.79	6.69E-01	−1.16	0.29	1.33E-04	−0.77	0.26	2.89E-03	−1.02	0.27	1.72E-04	3.14E-01	1.32E-02

Abbreviations: Coef: Coefficient of the regression; P: P-value; SE: Standard error; Storey q: Storey q-value.