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. Author manuscript; available in PMC: 2023 Mar 19.
Published in final edited form as: Nat Struct Mol Biol. 2023 Feb 9;30(3):383–390. doi: 10.1038/s41594-022-00913-5

Extended Data Table 1.

Data collection, processing and refinement statistics

WT declination WT declination + CPSF6-FG T=1 G60A/G61P T=1 M66A T=1 G60A/G61P/M66A
EMDB EMD-26715 EMD-28186 EMD-28054 EMD-28057 EMD-26718
PDB 7urn 8ejl 8eep 8eet 7urt
Data collection, processing and map calculation

Voltage (kV) 300 300 300 200 300
Electron exposure (e-/Å2) 50 54 50 48 50
Defocus range μm) 0.5 to 2.5 0.75 to 2.5 0.5 to 2.5 0.5 to 2.5 0.5 to 2.5
Pixel size (Å) 1.08 1.08 1.08 0.75 1.08
Symmetry imposed C5 C5 I I I
Particles 525,219 166,463 494,057 116,627 509,666
Map Resolution (Å) 3.4 3.9 2.2 3.1 2.4
 FSC threshold 0.143 0.143 0.143 0.143 0.143
Coordinate modeling and refinement

Initial model Chain A (pentamer) PDB 4xfx Chains L,M,N (half-hexamer) PDB 4xfx PDB 7urn PDB 7urt PDB 7urt PDB 4xfx
Model resolution (Å) 3.4 3.6 4.1 2.5 3.4 2.5
  FSC threshold 0.5 0.5 0.5 0.5 0.5 0.5
Map sharpening B-factor (Å2) 146.9 146.9 159.3 97.0 144.4 109.7
Model composition
  Non-hydrogen atoms 1,725 5,175 4,431 1,726 1,726 1,726
  Protein residues 221 663 619 221 221 221
  IP6 2 0 0 2 2 2
B-factors (Å2) 73.2 78.8 117.0 42.9 42.6
Root mean squared deviations
  Bond lengths (Å) 0.006 0.004 0.005 0.002 0.004 0.004
  Bond angles (°) 0.623 0.508 0.545 0.647 1.019 0.554
Validation
  Molprobity score 1.57 1.42 1.81 1.33 1.37 1.34
  Clash score 8.40 5.79 7.23 3.95 6.23 4.05
  Poor rotamers (%) 0.43 1.24 3.04 1.59 1.07 1.60
Ramachandran plot
  Favored (%) 97.26 97.87 97.82 100 99.54 99.09
  Outliers (%) 0 0 0 0 0 0
  Z-score 1.00 1.79 1.74 1.98 1.87 1.22