Antibodies
|
ADO (Rabbit polyclonal antibody) |
OriGene |
Cat#: TA322128; Lot#: D814AA091; RRID: AB_2920786 |
CBS (D8F2P) (Rabbit monoclonal antibody) |
Cell Signaling Technology |
Cat#: 14782; Lot#: 1; RRID: AB_2798609 |
CDO1 (Rabbit polyclonal antibody) |
Proteintech |
Cat#: 12589-1-AP; Lot#: 57877; RRID: AB_10638145 |
CSAD (Rabbit polyclonal antibody) |
LSBio (LifeSpan) |
Cat#: LS‑C375526; Lot#: 124060; RRID: AB_2801349 |
CSE (Rabbit polyclonal antibody) |
Cell Signaling Technology |
Cat#: 12217-1-AP; Lot#: 00089191; RRID: AB_2087497 |
FMO1 (Rabbit polyclonal antibody) |
LSBio (LifeSpan) |
Cat#: LS-C346135-50; Lot#: 215780; RRID: AB_2920787 |
GCLC (Mouse monoclonal antibody) |
Santa Cruz Biotechnology |
Cat#: sc-390811; Lot#: E1917; RRID: AB_2736837 |
GCLM (Rabbit polyclonal antibody) |
GeneTex |
Cat#: GTX114075; Lot#: 40156; RRID: AB_10619535 |
GSS (Mouse monoclonal antibody) |
Novus |
Cat#: NBP2-03351; Lot#: A01; RRID: AB_2920788 |
HSP90 (Rabbit polyclonal antibody) |
Cell Signaling Technology |
Cat#: 4874; Lot#: 6; RRID: AB_2233307 |
xCT (Rabbit polyclonal antibody) |
Cell Signaling Technology |
Cat#: 98051; Lot#: 1; RRID: AB_2800296 |
Chemicals, peptides, and recombinant proteins
|
Glucose |
Fisher Scientific |
Cat#: D16-500 |
Glycine |
VWR |
Cat#: BP381-1 |
L-Arginine·HCl |
Sigma Aldrich |
Cat#: A6969-25G |
L-Aspartic acid |
MP Biomedicals |
Cat#: 194633 |
L-Asparagine |
Sigma Aldrich |
Cat#: A4159-25G |
L-Cystine·2HCl |
Sigma Aldrich |
Cat#: C6727-25G |
L-Glutamic acid |
Sigma Aldrich |
Cat#: G8415-100G |
L-Glutamine |
VWR |
Cat#: 02-0131-0100 |
L-Histidine·HCl·H2O |
Sigma Aldrich |
Cat#: H5659-25G |
Hydroxy-L-proline |
TCI |
Cat#: H0296 |
L-Isoleucine |
Alfa Aesar |
Cat#: J63045 |
L-Leucine |
Sigma Aldrich |
Cat#: L8912-25G |
L-Lysine·HCl |
Sigma Aldrich |
Cat#: L8662-25G |
L-Methionine |
Sigma Aldrich |
Cat#: M5308-25G |
L-Phenylalanine |
Sigma Aldrich |
Cat#: P5482-25G |
L-Proline |
Sigma Aldrich |
Cat#: P5607-25G |
L-Serine |
Sigma Aldrich |
Cat#: S4311-25G |
L-Threonine |
VWR |
Cat#: E808-25G |
L-Tryptophan |
Sigma Aldrich |
Cat#: T8941-25G |
L-Tyrosine·2Na·2H2O |
Sigma Aldrich |
Cat#: T1145-25G |
L-Valine |
Sigma Aldrich |
Cat#: V0513-25G |
[13C3]-serine |
Cambridge Isotope Laboratories |
Cat#: CLM-1574-H-0.1 |
[1-13C1]-serine |
Cambridge Isotope Laboratories |
Cat#: CLM-1573-0.25 |
[13C3]-cysteine |
Cambridge Isotope Laboratories |
Cat#: CLM-4320-H-PK |
Methanol (LC-MS grade) |
Thermo Scientific |
Cat#: 047192.M1 |
H2O |
Honeywell Burdick & Jackson™ |
Cat#: LC365-4 |
Acetonitrile |
Honeywell Burdick & Jackson™ |
Cat#: 34998-2.5L |
N-ethylmaleimide (NEM) |
Alfa Aesar |
Cat#: 40526-06 |
UltraPure™ Distilled Water |
Invitrogen |
Cat#: 10977-015 |
Ammonium formate |
Frontier Scientific |
Cat#: JK967458
|
DL-Propargylglycine |
Fisher Scientific |
Cat#: 437320010 |
Experimental models: Cell lines
|
A549 |
ATCC |
Cat#: CCL-185; RRID: CVCL_0023 |
Calu3 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_0609 |
H1299 |
ATCC |
Cat#: CRL-5803; RRID: CVCL_0600 |
H1581 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_1479 |
H1792 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_1495 |
H1944 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_1508 |
H1975 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_1511 |
H1993 |
ATCC |
Cat#: CRL-5909; RRID: CVCL_1512 |
H2009 |
ATCC |
Cat#: CRL-5911; RRID: CVCL_1514 |
H2172 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_1537 |
H2347 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_1550 |
H460 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_0459 |
HCC15 |
Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) |
RRID: CVCL_2057 |
DMS79 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1178 |
H211 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1529 |
H526 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1569 |
16HC |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_X025 |
16HV |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_X026 |
86M1 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_8263 |
H146 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1473 |
H1838 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1499 |
H209 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1525 |
H2107 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1527 |
H524 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1568 |
H740 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1586 |
H82 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1591 |
H841 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1595 |
HCC33 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_2058 |
N417 |
Moffitt Lung Cancer Center of Excellence Cell Line Bank |
RRID: CVCL_1602 |
SW210.5 |
Dr. John Cleveland, Moffitt Cancer Center |
RRID: CVCL_S185 |
PATU8902 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_1845 |
PL45 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_3567 |
MiaPaca2 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_0428 |
T3M4 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_4056 |
8988T |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_1847 |
8902 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_1845 |
BXPC3 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_5I88 |
CFPAC |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_1119 |
MPANC96 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_7165 |
PANC1 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_0480 |
SUIT2 |
Dr. Lewis C. Cantley, Weill Cornell Medicine |
RRID: CVCL_3172 |
SW1990 |
ATCC |
Cat# CRL-2172; RRID: CVCL_1723 |
Alex |
Dr. Amaia Lujambio, Icahn School of Medicine |
RRID: CVCL_0485 |
HepG2 |
Dr. Amaia Lujambio, Icahn School of Medicine |
RRID: CVCL_0027 |
Hep3B |
Dr. Amaia Lujambio, Icahn School of Medicine |
RRID: CVCL_0326 |
SNU398 |
Dr. Amaia Lujambio, Icahn School of Medicine |
RRID: CVCL_0077 |
SNU449 |
Dr. Amaia Lujambio, Icahn School of Medicine |
RRID: CVCL_0454 |
Experimental models: Organisms/strains
|
LSL-KrasG12D (Krastm4Tyj) |
JAX |
RRID:IMSR_JAX:008179 |
Trp53flox (Trp53tm1Brn) |
JAX |
RRID:IMSR_JAX:008462 |
p48-Cre (Ptf1atm1(cre)Hnak) |
Dr. Karen Mann, Moffitt Cancer Center |
RRID:IMSR_JAX:023329 |
LSL-Nrf2D29H (Nfe2l2tm1Gmdn) |
(28) |
MGI:7327101 |
Rb1flox/flox; Trp53flox/flox; MycLSL/LSL (Igs2tm1(CAG-Myc*T58A/luc)Wrey Trp53tm1Brn Rb1tm3Tyj) |
JAX |
RRID:IMSR_JAX:029971 |
Recombinant DNA
|
pT3-EF1A-MYC-IRES-luc |
(29) |
RRID: Addgene_129775 |
CMV-SB13 vector |
(29) |
|
px330 p53 |
(29) |
|
Software and algorithms
|
El-Maven |
https://www.elucidata.io/el-maven
|
v 0.10.0 or 0.12.0 |
GraphPad Prism |
https://www.graphpad.com/scientific-software/prism/
|
Version 9 |
IsoCor |
https://isocor.readthedocs.io/en/latest/
|
Version 1.0 or 2.2.0 |
Xcalibur |
|
Version 4.0 |
Other
|
RPMI 1640 Medium Modified w/o L-Glutamine, w/o Amino acids, Glucose (Powder) |
US Biological |
Cat#: R9010-01 |
Dulbecco’s MEM (DMEM) w/ L-Glutamine and Sodium Biscarbonate, w/o Glucose, Serine, Glycine (Powder) |
US Biological |
Cat#: D9800-16 |
Dialyzed FBS (dFBS) |
Sigma Aldrich |
Cat#: F0392 |
DMEM, 1× (Dulbecco’s Modification of Eagle’s Medium) with 4.5 g/L glucose, L-glutamine & sodium pyruvate |
Corning |
Cat#: 10-013-CV |
RPMI Medium 1640 (1×) [+] L-Glutamine |
Gibco |
Cat#: 11875-093 |
DPBS w/o Calcium or Magnesium |
Lonza |
Cat#: 17-512F |
FBS |
Sigma Aldrich |
Cat#: F0926 |