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. Author manuscript; available in PMC: 2023 May 3.
Published in final edited form as: Cancer Res. 2023 May 2;83(9):1426–1442. doi: 10.1158/0008-5472.CAN-22-3000
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
ADO (Rabbit polyclonal antibody) OriGene Cat#: TA322128; Lot#: D814AA091; RRID: AB_2920786
CBS (D8F2P) (Rabbit monoclonal antibody) Cell Signaling Technology Cat#: 14782; Lot#: 1; RRID: AB_2798609
CDO1 (Rabbit polyclonal antibody) Proteintech Cat#: 12589-1-AP; Lot#: 57877; RRID: AB_10638145
CSAD (Rabbit polyclonal antibody) LSBio (LifeSpan) Cat#: LS‑C375526; Lot#: 124060; RRID: AB_2801349
CSE (Rabbit polyclonal antibody) Cell Signaling Technology Cat#: 12217-1-AP; Lot#: 00089191; RRID: AB_2087497
FMO1 (Rabbit polyclonal antibody) LSBio (LifeSpan) Cat#: LS-C346135-50; Lot#: 215780; RRID: AB_2920787
GCLC (Mouse monoclonal antibody) Santa Cruz Biotechnology Cat#: sc-390811; Lot#: E1917; RRID: AB_2736837
GCLM (Rabbit polyclonal antibody) GeneTex Cat#: GTX114075; Lot#: 40156; RRID: AB_10619535
GSS (Mouse monoclonal antibody) Novus Cat#: NBP2-03351; Lot#: A01; RRID: AB_2920788
HSP90 (Rabbit polyclonal antibody) Cell Signaling Technology Cat#: 4874; Lot#: 6; RRID: AB_2233307
xCT (Rabbit polyclonal antibody) Cell Signaling Technology Cat#: 98051; Lot#: 1; RRID: AB_2800296
Chemicals, peptides, and recombinant proteins
Glucose Fisher Scientific Cat#: D16-500
Glycine VWR Cat#: BP381-1
L-Arginine·HCl Sigma Aldrich Cat#: A6969-25G
L-Aspartic acid MP Biomedicals Cat#: 194633
L-Asparagine Sigma Aldrich Cat#: A4159-25G
L-Cystine·2HCl Sigma Aldrich Cat#: C6727-25G
L-Glutamic acid Sigma Aldrich Cat#: G8415-100G
L-Glutamine VWR Cat#: 02-0131-0100
L-Histidine·HCl·H2O Sigma Aldrich Cat#: H5659-25G
Hydroxy-L-proline TCI Cat#: H0296
L-Isoleucine Alfa Aesar Cat#: J63045
L-Leucine Sigma Aldrich Cat#: L8912-25G
L-Lysine·HCl Sigma Aldrich Cat#: L8662-25G
L-Methionine Sigma Aldrich Cat#: M5308-25G
L-Phenylalanine Sigma Aldrich Cat#: P5482-25G
L-Proline Sigma Aldrich Cat#: P5607-25G
L-Serine Sigma Aldrich Cat#: S4311-25G
L-Threonine VWR Cat#: E808-25G
L-Tryptophan Sigma Aldrich Cat#: T8941-25G
L-Tyrosine·2Na·2H2O Sigma Aldrich Cat#: T1145-25G
L-Valine Sigma Aldrich Cat#: V0513-25G
[13C3]-serine Cambridge Isotope Laboratories Cat#: CLM-1574-H-0.1
[1-13C1]-serine Cambridge Isotope Laboratories Cat#: CLM-1573-0.25
[13C3]-cysteine Cambridge Isotope Laboratories Cat#: CLM-4320-H-PK
Methanol (LC-MS grade) Thermo Scientific Cat#: 047192.M1
H2O Honeywell Burdick & Jackson™ Cat#: LC365-4
Acetonitrile Honeywell Burdick & Jackson™ Cat#: 34998-2.5L
N-ethylmaleimide (NEM) Alfa Aesar Cat#: 40526-06
UltraPure™ Distilled Water Invitrogen Cat#: 10977-015
Ammonium formate Frontier Scientific Cat#: JK967458
DL-Propargylglycine Fisher Scientific Cat#: 437320010
Experimental models: Cell lines
A549 ATCC Cat#: CCL-185; RRID: CVCL_0023
Calu3 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_0609
H1299 ATCC Cat#: CRL-5803; RRID: CVCL_0600
H1581 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_1479
H1792 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_1495
H1944 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_1508
H1975 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_1511
H1993 ATCC Cat#: CRL-5909; RRID: CVCL_1512
H2009 ATCC Cat#: CRL-5911; RRID: CVCL_1514
H2172 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_1537
H2347 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_1550
H460 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_0459
HCC15 Dr. John Minna, Hamon Cancer Center Collection (University of Texas-Southwestern Medical Center) RRID: CVCL_2057
DMS79 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1178
H211 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1529
H526 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1569
16HC Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_X025
16HV Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_X026
86M1 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_8263
H146 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1473
H1838 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1499
H209 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1525
H2107 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1527
H524 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1568
H740 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1586
H82 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1591
H841 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1595
HCC33 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_2058
N417 Moffitt Lung Cancer Center of Excellence Cell Line Bank RRID: CVCL_1602
SW210.5 Dr. John Cleveland, Moffitt Cancer Center RRID: CVCL_S185
PATU8902 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_1845
PL45 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_3567
MiaPaca2 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_0428
T3M4 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_4056
8988T Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_1847
8902 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_1845
BXPC3 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_5I88
CFPAC Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_1119
MPANC96 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_7165
PANC1 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_0480
SUIT2 Dr. Lewis C. Cantley, Weill Cornell Medicine RRID: CVCL_3172
SW1990 ATCC Cat# CRL-2172; RRID: CVCL_1723
Alex Dr. Amaia Lujambio, Icahn School of Medicine RRID: CVCL_0485
HepG2 Dr. Amaia Lujambio, Icahn School of Medicine RRID: CVCL_0027
Hep3B Dr. Amaia Lujambio, Icahn School of Medicine RRID: CVCL_0326
SNU398 Dr. Amaia Lujambio, Icahn School of Medicine RRID: CVCL_0077
SNU449 Dr. Amaia Lujambio, Icahn School of Medicine RRID: CVCL_0454
Experimental models: Organisms/strains
LSL-KrasG12D (Krastm4Tyj) JAX RRID:IMSR_JAX:008179
Trp53flox (Trp53tm1Brn) JAX RRID:IMSR_JAX:008462
p48-Cre (Ptf1atm1(cre)Hnak) Dr. Karen Mann, Moffitt Cancer Center RRID:IMSR_JAX:023329
LSL-Nrf2D29H (Nfe2l2tm1Gmdn) (28) MGI:7327101
Rb1flox/flox; Trp53flox/flox; MycLSL/LSL (Igs2tm1(CAG-Myc*T58A/luc)Wrey Trp53tm1Brn Rb1tm3Tyj) JAX RRID:IMSR_JAX:029971
Recombinant DNA
pT3-EF1A-MYC-IRES-luc (29) RRID: Addgene_129775
CMV-SB13 vector (29)
px330 p53 (29)
Software and algorithms
El-Maven https://www.elucidata.io/el-maven v 0.10.0 or 0.12.0
GraphPad Prism https://www.graphpad.com/scientific-software/prism/ Version 9
IsoCor https://isocor.readthedocs.io/en/latest/ Version 1.0 or 2.2.0
Xcalibur Version 4.0
Other
RPMI 1640 Medium Modified w/o L-Glutamine, w/o Amino acids, Glucose (Powder) US Biological Cat#: R9010-01
Dulbecco’s MEM (DMEM) w/ L-Glutamine and Sodium Biscarbonate, w/o Glucose, Serine, Glycine (Powder) US Biological Cat#: D9800-16
Dialyzed FBS (dFBS) Sigma Aldrich Cat#: F0392
DMEM, 1× (Dulbecco’s Modification of Eagle’s Medium) with 4.5 g/L glucose, L-glutamine & sodium pyruvate Corning Cat#: 10-013-CV
RPMI Medium 1640 (1×) [+] L-Glutamine Gibco Cat#: 11875-093
DPBS w/o Calcium or Magnesium Lonza Cat#: 17-512F
FBS Sigma Aldrich Cat#: F0926