Extended Data Tab. 3.
Refinement statistics for apo datasets.*
| Dataset | Apo laser off | Light | Dark1 | Dark2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
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| ||||||||||
| Apo 20ns | Apo 20 us | Apo 200 us | Apo 20ns | Apo 20 us | Apo 200 us | Apo 20ns | Apo 20 us | Apo 200 us | ||
|
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| PDB ID | 8CW8 | 8CVU | 8CW0 | 8CW5 | 8CW | 8CW1 | 8CW6 | 8CVW | 8CW3 | 8CW7 |
| Resolution Range | 28.09–1.57 (1.60–1.57) | 31.62 –1.57 (1.60–1.57) | 28.11–1.57 (1.60–1.57) | 28.11–1.57 (1.60–1.57) | 28.09 –1.57 (1.60–1.57) | 28.09 –1.57 (1.60–1.57) | 28.09 –1.65 (1.68–1.65) | 28.09 –1.57 (1.60–1.57) | 28.09 –1.57 (1.60–1.57) | 28.09 –1.57 (1.60–1.57) |
| Reflections used in refinement | 17602 (1720) | 17684 (1740) | 17669 (1739) | 17656 (1734) | 17618 (1728) | 17626 (1727) | 15234 (1474) | 17620 (1727) | 17626 (1727) | 17630 (1736) |
| Reflections used for R-free | 895 (91) | 902 (96) | 898 (93) | 899 (93) | 896 (91) | 896 (91) | 776 (64) | 896 (92) | 896 (92) | 896 (92) |
| R-work | 0.1462 (0.2973) | 0.1511 (0.2744) | 0.1448 (0.2476) | 0.1527 (0.2791) | 0.1449 (0.2178) | 0.1478 (0.2228) | 0.1364 (0.1727) | 0.1463 (0.2134) | 0.1440 (0.2152) | 0.1525 (0.2531) |
| R-free | 0.1830 (0.3671) | 0.1726 (0.3492) | 0.1660 (0.3136) | 0.1807 (0.3729) | 0.1699 (0.2957) | 0.1680 (0.2819) | 0.1706 (0.2776) | 0.1672 (0.2848) | 0.1692 (0.2977) | 0.1758 (0.3457) |
| No. of non-H atoms | 1209 | 1199 | 1203 | 1207 | 1204 | 1207 | 1203 | 1203 | 1198 | 1203 |
| macromolecules | 1099 | 1099 | 1099 | 1099 | 1099 | 1099 | 1099 | 1099 | 1099 | 1099 |
| ligands | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 | 20 |
| solvent | 96 | 86 | 90 | 94 | 91 | 94 | 90 | 90 | 85 | 90 |
| Protein residues | 129 | 129 | 129 | 129 | 129 | 129 | 129 | 129 | 129 | 129 |
| RMS (bonds) | 0.006 | 0.005 | 0.010 | 0.005 | 0.005 | 0.005 | 0.010 | 0.006 | 0.012 | 0.004 |
| RMS (angles) | 0.80 | 0.69 | 0.91 | 0.79 | 0.79 | 0.77 | 0.95 | 0.82 | 0.99 | 0.69 |
| Ramachandran favored (%) | 99.21 | 99.21 | 99.21 | 98.43 | 99.21 | 99.21 | 99.21 | 99.21 | 98.43 | 98.43 |
| Ramachandran allowed (%) | 0.79 | 0.79 | 0.79 | 1.57 | 0.79 | 0.79 | 0.79 | 0.79 | 1.57 | 1.57 |
| Ramachandran outliers (%) | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Rotamer outliers (%) | 2.56 | 2.56 | 2.56 | 2.56 | 2.56 | 2.56 | 2.56 | 2.56 | 2.56 | 2.56 |
| Clashscore | 4.54 | 2.72 | 5.44 | 4.99 | 3.18 | 4.99 | 4.54 | 4.54 | 4.54 | 4.08 |
| Average B-factor | 20.07 | 20.55 | 20.29 | 20.14 | 19.97 | 20.09 | 19.96 | 19.77 | 19.83 | 19.36 |
| macromolecules | 18.58 | 19.25 | 18.88 | 18.73 | 18.60 | 18.65 | 18.61 | 18.43 | 18.53 | 18.03 |
| ligands | 48.63 | 50.26 | 50.54 | 47.99 | 48.28 | 49.38 | 45.42 | 46.05 | 49.70 | 49.60 |
| solvent | 33.01 | 32.28 | 32.73 | 32.54 | 32.23 | 32.57 | 32.41 | 32.00 | 31.71 | 30.89 |
*
Statistics for the highest-resolution shell are shown in parentheses.