Extended Data Fig. 6 ∣. Stabl_L’s performance on synthetic data with varying number of total features compared to SS with fixed frequency thresholds.

Synthetic datasets differing in the number of total features were generated as described in Fig. 2. Sparsity ($\mid \widehat{\mathrm{S}}\mid$, a), reliability (FDR, b, and JI, c), and predictivity (RMSE, d) of Stabl_L (red lines) and stability selection with fixed frequency threshold of 30% (light grey lines), 50% (dark grey lines), or 80% (black lines) as a function of the number of samples (n, x-axis) for 10 (left), 25 (middle), or 50 (right) informative features within p = 100, 500, 1000, 2500, 5000, 7500, and 10000 total number of features. Boxes in box plots indicate the median and interquartile range (IQR), with whiskers indicating 1.5 × IQR.