Table 1. Gene changes during differentiation.
OPCs were infected with control or DnREST expressing retroviruses and grown in proliferation media for 5 days. Cells were switched to either oligodendrocyte media or 2A differentiation media for 3–4 days. Total RNA was collected and transcript levels were analyzed by real-time RT-PCR. Relative fold difference in gene expression in DnREST infected cells is shown relative to control infected cells. The standard deviation (SD) was taken from 4–6 total PCR runs from 2 separate experiments.
Oligodendrocyte | 2A | ||
---|---|---|---|
Gene Name | Relative Fold Difference |
Gene Name | Relative Fold Difference |
CelsR3 | 10.48 ± 4.16 ** | SCG10 | 13.73 ± 2.24 ** |
SCG10 | 6.85 ± 0.25 ** | CelsR3 | 11.33 ± 3.92 ** |
Snap25 | 5.25 ± 0.35 ** | Snap25 | 4.88 ± 1.09 ** |
NFM | 4.89 ± 0.98 ** | Nestin | 3.65 ± 2.05 * |
Myt1 | 3.61 ± 0.12 ** | Myt1L | 2.95 ± 0.78 ** |
βIIITub | 2.08 ± 0.28 ** | βIIITub | 2.93 ± 0.27 ** |
Syn1 | 1.96 ± 0.24 ** | ATOH | 2.50 ± 0.08 ** |
Nestin | 1.83 ± 0.03 ** | DCX | 2.42 ± 1.17 |
Hes5 | 1.82 ± 0.05 ** | NGN3 | 2.36 ± 0.07 ** |
Hes1 | 1.76 ± 0.75 | NeuroD1 | 2.29 ± 1.13 |
Syt2 | 1.75 ± 0.95 | NF-M | 2.03 ± 0.02 ** |
Calb1 | 1.71 ± 0.08 ** | Myt1 | 1.98 ± 0.15 ** |
Myt1L | 1.58 ± 0.07 ** | Hes1 | 1.71 ± 0.13 ** |
Olig2 | 1.49 ± 0.74 | Syn1 | 1.55 ± 0.29 * |
ASCL1 | 1.40 ± 0.04 ** | Nkx2.2 | 1.48 ± 0.20 ** |
DCX | 1.35 ± 0.06 ** | NGN2 | 1.48 ± 0.02 ** |
PLP | NC | Calb1 | 1.47 ± 0.09 ** |
Sox2 | NC | GluR2 | 1.40 ± 0.07 ** |
PDGFaR | NC | Olig1 | 1.39 ± 0.03 ** |
GluR2 | NC | Olig2 | 1.25 ± 0.11 * |
NG2 | NC | B-actin | NC |
Olig1 | NC | Sox2 | NC |
Sox10 | NC | ID4 | NC |
YY1 | NC | YY1 | NC |
GFAP | NC | ASCL1 | NC |
CTNNb1 | NC | Hes5 | NC |
Id2 | NC | PLP | NC |
Nkx2.2 | NC | PDGFaR | NC |
B-actin | NC | ID2 | NC |
Id4 | NC | CNP | 0.74 ± 0.22 |
MOBP | 0.79 ± 0.07 ** | NG2 | 0.68 ± 0.36 |
MBP | 0.74 ± 0.05 ** | MOBP | 0.66 ± 0.38 |
MAG | 0.72 ± 0.03 ** | MBP | 0.65 ± 0.05 ** |
CNP | 0.50 ± 0.31 * | MAG | 0.58 ± 0.18 ** |
GFAP | 0.41 ± 0.11 ** | ||
Brca1 | 0.39 ± 0.02 ** |
NC= no change,
P value < 0.05,
P value < 0.005.
Where not indicated, the change was not statistically significant.