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. Author manuscript; available in PMC: 2011 Jul 14.
Published in final edited form as: Amino Acids. 2010 Jul 23;41(2):321–328. doi: 10.1007/s00726-010-0692-2

Table 1.

Comparison of the performance of different versions of Protein Prospector Batch-Tag

Version 5.3.3 Version 5.4.2 Improvement
Intact glycopeptides
    E < 0.10 21 61 2.9
    E < 0.05 16 42 2.63
    E < 0.01 10 28 2.8
Partially deglycosylated peptides
    E < 0.10 23 35 1.52
    E < 0.05 21 30 1.42
    E < 0.01 17 23 1.35