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. Author manuscript; available in PMC: 2012 Oct 22.
Published in final edited form as: Fungal Divers. 2011 Oct 9;53(1):1–221. doi: 10.1007/s13225-011-0117-x

Table 3.

Taxa used in the phylogenetic analysis and their corresponding GenBank numbers. Culture and voucher abbreviations are indicated were available

Species Culture/voucher1 LSU SSU RPB2 TEF1
Acrocordiopsis patilii BCC 28166 GU479772 GU479736 GU479811
Acrocordiopsis patilii BCC 28167 GU479773 GU479737 GU479812
Aigialus grandis BCC 18419 GU479774 GU479738 GU479813 GU479838
Aigialus grandis JK 5244A GU301793 GU296131 GU371762
Aigialus mangrovis BCC 33563 GU479776 GU479741 GU479815 GU479840
Aigialus mangrovis BCC 33564 GU479777 GU479742 GU479816 GU479841
Aigialus parvus A6 GU301795 GU296133 GU371771 GU349064
Aigialus parvus BCC 32558 GU479779 GU479743 GU479818 GU479843
Aigialus rhizophorae BCC 33572 GU479780 GU479745 GU479819 GU479844
Aigialus rhizophorae BCC 33573 GU479781 GU479746 GU479820 GU479845
Alternaria alternata CBS 916.96 DQ678082 DQ678031 DQ677980 DQ677927
Amniculicola immersa CBS 123083 FJ795498 GU456295 GU456358 GU456273
Amniculicola parva CBS 123092 FJ795497 GU296134 GU349065
Anteaglonium abbreviatum ANM 925.1 GQ221877 GQ221924
Anteaglonium abbreviatum GKM 1029 GQ221878 GQ221915
Anteaglonium globosum ANM 925.2 GQ221879 GQ221925
Anteaglonium latirostrum L100N 2 GQ221876 GQ221938
Arthopyrenia salicis 1994 Coppins AY607730
Arthopyrenia salicis CBS 368.94 AY538339 AY538333
Ascochyta pisi CBS 126.54 DQ678070 DQ678018 DQ677967 DQ677913
Ascocratera manglicola BCC 09270 GU479782 GU479747 GU479821 GU479846
Ascocratera manglicola JK 5262 C GU301799 GU296136 GU371763
Asteromassaria pulchra CBS 124082 GU301800 GU296137 GU371772 GU349066
Astrosphaeriella aggregata MAFF 239485 AB524590 AB524449
Astrosphaeriella aggregata MAFF 239486 AB524591 AB524450 AB539105 AB539092
Astrosphaeriella bakeriana CBS 115556 GU301801 GU349015
Astrosphaeriella stellata MAFF 239487 AB524592 AB524451
Beverwykella pulmonaria CBS 283.53 GU301804 GU371768
Biatriospora marina CY 1228 GQ925848 GQ925835 GU479823 GU479848
Bimuria novae-zelandiae CBS 107.79 AY016356 AY016338 DQ470917 DQ471087
Byssolophis sphaerioides IFRDCC2053 GU301805 GU296140 GU456348 GU456263
Byssosphaeria jamaicana SMH1403 GU385152 GU327746
Byssosphaeria rhodomphala GKM L153N GU385157 GU327747
Byssosphaeria salebrosa SMH2387 GU385162 GU327748
Byssosphaeria schiedermayeriana GKM1197 GU385161 GU327750
Byssosphaeria schiedermayeriana GKM152N GU385168 GU327749
Byssosphaeria villosa GKM204N GU385151 GU327751
Byssothecium circinans CBS 675.92 AY016357 AY016339 DQ767646 GU349061
Chaetosphaeronema hispidulum CBS 216.75 EU754144 EU754045 GU371777
Cochliobolus heterostrophus CBS 134.39 AY544645 AY544727 DQ247790 DQ497603
Cochliobolus sativus DAOM 226212 DQ678045 DQ677995 DQ677939
Corynespora cassiicola CBS 100822 GU301808 GU296144 GU371742 GU349052
Corynespora olivacea CBS 114450 GU301809 GU349014
Corynespora smithii CABI 5649b GU323201 GU371783 GU349018
Cucurbitaria berberidis CBS 394.84 GQ387605 GQ387544
Decaisnella formosa BCC 25616 GQ925846 GQ925833 GU479825 GU479851
Decaisnella formosa BCC 25617 GQ925847 GQ925834 GU479824 GU479850
Decorospora gaudefroyi CBS 332.63 EF177849 AF394542
Delitschia cf. chaetomioides GKM 1283 GU385172
Delitschia cf. chaetomioides GKM 3253.2 GU390656
Delitschia chaetomioides GKM1283 GU385172 GU327752
Delitschia chaetomioides SMH3253.2 GU390656 GU327753
Delitschia winteri CBS 225.62 DQ678077 DQ678026 DQ677975 DQ677922
Didymella exigua CBS 183.55 EU754155 EU754056
Didymocrea sadasivanii CBS 438 65 DQ384103 DQ384066
Didymosphaeria futilis CMW 22186 EU552123
Didymosphaeria futilis HKUCC 5834 GU205219 GU205236
Dothidotthia aspera CPC 12933 EU673276 EU673228
Dothidotthia symphoricarpi CBS119687 EU673273 EU673224
Entodesmium rude CBS 650.86 GU301812 GU349012
Falciformispora lignatilis BCC 21117 GU371826 GU371834 GU371819
Falciformispora lignatilis BCC 21118 GU371827 GU371835 GU371820
Floricola striata JK 5603 K GU479785 GU479751
Floricola striata JK 5678I GU301813 GU296149 GU371758
Halomassarina thalassiae BCC 17055 GQ925850 GQ925843
Halomassarina thalassiae JK 5262D GU301816 GU349011
Halotthia posidoniae BBH 22481 GU479786 GU479752
Helicascus nypae BCC 36751 GU479788 GU479754 GU479826 GU479854
Helicascus nypae BCC 36752 GU479789 GU479755 GU479827 GU479855
Herpotrichia diffusa CBS 250.62 DQ678071 DQ678019 DQ677968 DQ677915
Herpotrichia juniperi CBS 200.31 DQ678080 DQ678029 DQ677978 DQ677925
Herpotrichia macrotricha GKM196N GU385176 GU327755
Herpotrichia macrotricha SMH269 GU385177 GU327756
Hypsostroma caimitalense GKM 1165 GU385180
Hypsostroma saxicola SMH 5005 GU385181
Hysterium angustatum CBS 123334 FJ161207 FJ161167 FJ161129 FJ161111
Hysterium angustatum CBS 236.34 FJ161180 GU397359 FJ161117 FJ161096
Julella avicenniae BCC 18422 GU371823 GU371831 GU371787 GU371816
Julella avicenniae BCC 20173 GU371822 GU371830 GU371786 GU371815
Julella avicenniae JK 5326A GU479790 GU479756
Kalmusia scabrispora MAFF 239517 AB524593 AB524452 AB539093 AB539106
Kalmusia scabrispora NBRC 106237 AB524594 AB524453 AB539094 AB539107
Karstenula rhodostoma CBS 690.94 GU301821 GU296154 GU371788 GU349067
Katumotoa bambusicola MAFF 239641 AB524595 AB524454 AB539095 AB539108
Keissleriella cladophila CBS 104.55 GU301822 GU296155 GU371735 GU349043
Keissleriella rara CBS 118429 GU479791 GU479757
Kirschsteiniothelia elaterascus A22-5A/HKUCC7769 AY787934 AF053727
Lentithecium aquaticum CBS 123099 GU301823 GU296156 GU371789 GU349068
Lentithecium arundinaceum CBS 123131 GU456320 GU456298 GU456281
Lentithecium arundinaceum CBS 619.86 GU301824 GU296157 FJ795473
Lentithecium fluviatile CBS 122367 GU301825 GU296158 GU349074
Lepidosphaeria nicotiae CBS 101341 DQ678067 DQ677963 DQ677910
Leptosphaeria biglobosa CBS 298.36 GU237980 GU238207
Leptosphaeria biglobosa CBS 303.51 GU301826 GU349010
Leptosphaeria doliolum CBS 505.75 GU301827 GU296159 GU349069
Leptosphaeria dryadis CBS 643.86 GU301828 GU371733 GU349009
Leptosphaerulina argentinensis CBS 569.94 GU301829 GU349008
Leptosphaerulina australis CBS 311.51-T FJ795500 GU456357 GU456272
Leptosphaerulina australis CBS 317.83 GU301830 GU296160 GU371790 GU349070
Leptosphearia maculans DAOM 229267 DQ470946 DQ470993 DQ470894 DQ471062
Letendraea helminthicola CBS 884.85 AY016362 AY016345
Letendraea padouk CBS 485.70 AY849951 GU296162
Lindgomyces breviappendiculatus KT 1399 AB521749 AB521734
Lindgomyces cinctosporae R56-1 AB522431 AB522430
Lindgomyces cinctosporae R56-3 GU266245 GU266238
Lindgomyces ingoldianus KH 100 JCM 16479 AB521737 AB521720
Lindgomyces rotundatus KH 114 JCM 16484 AB521742 AB521725
Lophiostoma alpigenum GKM 1091b GU385193
Lophiostoma arundinis CBS 621.86 DQ782384 DQ782383 DQ782386 DQ782387
Lophiostoma caulium CBS 623.86 GU301833 GU296163 GU371791
Lophiostoma compressum IFRD 2014 GU301834 GU296164 FJ795457
Lophiostoma crenatum CBS 629.86 DQ678069 DQ678017 DQ677965 DQ677912
Lophiostoma fuckelii CBS 101952 DQ399531
Lophiostoma fuckelii CBS 113432 EU552139
Lophiostoma fuckelii GKM 1063 GU385192
Lophiostoma macrostomum CBS 122681 EU552141
Lophiostoma macrostomum HHUF 27293 AB433274
Lophiostoma macrostomum KT 635 AB433273 AB521731
Lophiostoma quadrinucleatum GKM1233 GU385184 GU327760
Lophiostoma sagittiforme HHUF 29754 AB369267
Lophiotrema brunneosporum CBS 123095 GU301835 GU296165 GU349071
Lophiotrema lignicola CBS 122364 GU301836 GU296166 GU349072
Massarina arundinariae MAFF 239461 AB524596 AB524455 AB539096 AB524817
Massarina arundinariae NBRC 106238 AB524597 AB524456 AB539097 AB524818
Lophiotrema nucula CBS 627.86 GU301837 GU296167 GU371792 GU349073
Loratospora aestuarii JK 5535B GU301838 GU296168 GU371760
Macroventuria anomochaeta CBS 525.71 GU456315 GU456346 GU456262
Massaria anomia CBS 123109 GU301792 GU296130 GU349062
Massaria anomia CBS 591.78 GU301839 GU296169 GU371769
Massaria ariae M52 HQ599382 HQ599456 HQ599322
Massaria aucupariae M49 HQ599384 HQ599455 HQ599324
Massaria campestris M28 HQ599385 HQ599449 HQ599459 HQ599325
Massaria conspurcata M14 HQ599393 HQ599441 HQ599333
Massaria gigantispora M26 HQ599397 HQ599447 HQ599337
Massaria inquinans M19 HQ599402 HQ599444 HQ599460 HQ599342
Massaria lantanae M18 HQ599406 HQ599443 HQ599346
Massaria macra M3 HQ599408 HQ599450 HQ599348
Massaria mediterranea M45 HQ599417 HQ599452 HQ599357
Massaria platanoidea M7 HQ599420 HQ599457 HQ599462 HQ599359
Massaria pyri M21 HQ599424 HQ599445 HQ599363
Massaria vindobonensis M27 HQ599429 HQ599448 HQ599464 HQ599368
Massaria vomitoria M13 HQ599437 HQ599440 HQ599466 HQ599375
Massarina cisti CBS 266.62 FJ795447 FJ795490 FJ795464
Massarina eburnea CBS 473.64 GU301840 GU296170 GU371732 GU349040
Massarina igniaria CBS 845.96 GU301841 GU296171 GU371793
Massarina ricifera JK 5535 F GU479793 GU479759
Massariosphaeria phaeospora CBS 611.86 GU301843 GU296173 GU371794
Mauritiana rhizophorae BCC 28866 GU371824 GU371832 GU371796 GU371817
Mauritiana rhizophorae BCC 28867 GU371825 GU371833 GU371797 GU371818
Melanomma pulvis-pyrius CBS 124080 GU456323 GU456302 GU456350 GU456265
Melanomma pulvis-pyrius CBS 371.75 GU301845 GU371798 GU349019
Melanomma pulvis-pyrius SMH 3291 GU385197
Melanomma rhododendri ANM 73 GU385198
Misturatosphaeria aurantonotata GKM1238 GU385173 GU327761
Misturatosphaeria aurantonotata GKM1280 GU385174 GU327762
Misturatosphaeria claviformis GKM1210 GU385212 GU327763
Misturatosphaeria kenyensis GKM1195 GU385194 GU327767
Misturatosphaeria kenyensis GKM L100Na GU385189 GU327766
Misturatosphaeria minima GKM169N GU385165 GU327768
Misturatosphaeria tennesseensis ANM911 GU385207 GU327769
Misturatosphaeria uniseptata SMH4330 GU385167 GU327770
Monascostroma innumerosum CBS 345.50 GU301850 GU296179 GU349033
Monotosporella tuberculata CBS 256.84 GU301851 GU349006
Montagnula anthostomoides CBS 615.86 GU205223 GU205246
Montagnula opulenta CBS 168.34 DQ678086 AF164370 DQ677984
Morosphaeria ramunculicola BCC 18405 GQ925854 GQ925839
Morosphaeria ramunculicola JK 5304B GU479794 GU479760 GU479831
Morosphaeria velataspora BCC 17059 GQ925852 GQ925841
Morosphaeria velataspora BCC 17058 GQ925851 GQ925840
Massariosphaeria grandispora CBS 613 86 GU301842 GU296172 GU371725 GU349036
Massariosphaeria typhicola CBS 123126 GU301844 GU296174 GU371795
Neophaeosphaeria filamentosa CBS 102202 GQ387577 GQ387516 GU371773 GU349084
Neotestudina rosatii CBS 690.82 DQ384069
Neottiosporina paspali CBS 331.37 EU754172 EU754073 GU371779 GU349079
Ophiosphaerella herpotricha CBS 240.31 DQ767656 DQ767650 DQ767645 DQ767639
Ophiosphaerella herpotricha CBS 620.86 DQ678062 DQ678010 DQ677958 DQ677905
Ophiosphaerella sasicola MAFF 239644 AB524599 AB524458 AB539098 AB539111
Paraconiothyrium minitans CBS 122788 EU754173 EU754074 GU371776 GU349083
Paraphaeosphaeria michotii CBS 591.73 GU456326 GU456305 GU456352 GU456267
Paraphaeosphaeria michotii CBS 652.86 GU456325 GU456304 GU456351 GU456266
Phaeosphaeria ammophilae CBS 114595 GU301859 GU296185 GU371724 GU349035
Phaeosphaeria avenaria CBS 602.86 AY544684 AY544725 DQ677941 DQ677885
Phaeosphaeria avenaria DAOM 226215 AY544684 AY544725 DQ677941 DQ677885
Phaeosphaeria brevispora MAFF 239276 AB524600 AB524459 AB539099 AB539112
Phaeosphaeria brevispora NBRC 106240 AB524601 AB524460 AB539100 AB539113
Phaeosphaeria caricis CBS 120249 GU301860 GU349005
Phaeosphaeria elongata CBS 120250 GU456327 GU456306 GU456345 GU456261
Phaeosphaeria eustoma CBS 573.86 DQ678063 DQ678011 DQ677959 DQ677906
Phaeosphaeria luctuosa CBS 308.79 GU301861 GU349004
Phaeosphaeria nigrans CBS 576.86 GU456331 GU456356 GU456271
Phaeosphaeria nodorum CBS 259.49 GU456332 GU456285
Phaeosphaeria oryzae CBS 110110 GQ387591 GQ387530
Phaeosphaeriopsis musae CBS 120026 GU301862 GU296186 GU349037
Phoma apiicola CBS 285.72 GU238040 GU238211
Phoma betae CBS 109410 EU754178 EU754079 GU371774 GU349075
Phoma complanata CBS 268.92 EU754180 EU754081 GU371778 GU349078
Phoma cucurbitacearum CBS 133.96 GU301863 GU371767
Phoma exigua CBS 431.74 EU754183 EU754084 GU371780 GU349080
Phoma glomerata CBS 528.66 EU754184 EU754085 GU371781 GU349081
Phoma herbarum CBS 276.37 DQ678066 DQ678014 DQ677962 DQ677909
Phoma radicina CBS 111.79 EU754191 EU754092 GU349076
Phoma valerianae CBS 630.68 GU238150 GU238229
Phoma vasinfecta CBS 539.63 GU238151 GU238230
Phoma violicola CBS 306.68 GU238156 GU238231
Phoma zeae-maydis CBS 588.69 EU754192 EU754093 GU371782 GU349082
Platychora ulmi CBS 361.52 EF114702 EF114726
Lophiostoma compressum GKM1048 GU385204 GU327772
Lophiostoma scabridisporum BCC 22836 GQ925845 GQ925832 GU479829 GU479856
Lophiostoma scabridisporum BCC 22835 GQ925844 GQ925831 GU479830 GU479857
Pleomassaria siparia CBS 279.74 DQ678078 DQ678027 DQ677976 DQ677923
Pleospora ambigua CBS 113979 AY787937
Pleospora herbarum CBS 191.86 DQ247804 DQ247812 DQ247794 DQ471090
Polyplosphaeria fusca CBS 125425 AB524607 AB524466 AB524822
Polyplosphaeria fusca MAFF 239687 AB524606 AB524465
Preussia funiculata CBS 659.74 GU301864 GU296187 GU371799 GU349032
Preussia lignicola CBS 264.69 GU301872 GU296197 GU371765 GU349027
Preussia terricola DAOM 230091 AY544686 AY544726 DQ470895 DQ471063
Prosthemium betulinum CBS 127468 AB553754 AB553644
Prosthemium canba JCM 16966 AB553760 AB553646
Prosthemium orientale JCM 12841 AB553748 AB553641
Prosthemium stellare CBS 126964 AB553781 AB553650
Pseudotetraploa curviappendiculata CBS 125426 AB524610 AB524469 AB524825
Pseudotetraploa curviappendiculata MAFF 239495 AB524608 AB524467
Pseudotetraploa javanica MAFF 239498 AB524611 AB524470 AB524826
Pseudotetraploa longissima MAFF 239497 AB524612 AB524471 AB524827
Pseudotrichia guatopoensis SMH4535 GU385202 GU327774
Pyrenochaeta acicola CBS 812.95 GQ387602 GQ387541
Pleurophoma cava CBS 257.68 EU754199 EU754100
Pyrenochaeta corn CBS 248.79 GQ387608 GQ387547
Pyrenochaeta nobilis CBS 292.74 GQ387615 GQ387554
Pyrenochaeta nobilis CBS 407.76 DQ678096 DQ677991 DQ677936
Pyrenochaeta quercina CBS 115095 GQ387619 GQ387558
Pyrenochaeta unguis-hominis CBS 378.92 GQ387621 GQ387560
Pyrenochaetopsis decipiens CBS 343.85 GQ387624 GQ387563
Pyrenophora phaeocomes DAOM 222769 DQ499596 DQ499595 DQ497614 DQ497607
Pyrenophora tritici-repentis OSC 100066 AY544672 DQ677882
Quadricrura bicornis CBS 125427 AB524613 AB524472 AB524828
Quadricrura meridionalis CBS 125684 AB524614 AB524473 AB524829
Quadricrura septentrionalis CBS 125428 AB524617 AB524476 AB524832
Quintaria lignatilis BCC 17444 GU479797 GU479764 GU479832 GU479859
Quintaria lignatilis CBS 117700 GU301865 GU296188 GU371761
Quintaria submersa CBS 115553 GU301866 GU349003
Repetophragma ontariense HKUCC 10830 DQ408575 DQ435077
Rimora mangrovei JK 5246A GU301868 GU296193 GU371759
Rimora mangrovei JK 5437B GU479798 GU479765
Roussoella hysterioides CBS 125434 AB524622 AB524481 AB539102 AB539115
Roussoella hysterioides MAFF 239636 AB524621 AB524480 AB539101 AB539114
Roussoella pustulans MAFF 239637 AB524623 AB524482 AB539103 AB539116
Roussoellopsis tosaensis MAFF 239638 AB524625 AB539104 AB539117
Saccothecium sepincola CBS 278.32 GU301870 GU296195 GU371745 GU349029
Salsuginea ramicola KT 2597.1 GU479800 GU479767 GU479833 GU479861
Salsuginea ramicola KT 2597.2 GU479801 GU479768 GU479834 GU479862
Setomelanomma holmii CBS 110217 GU301871 GU296196 GU371800 GU349028
Setosphaeria monoceras AY016368 AY016368
Massaria platani CBS 221.37 DQ678065 DQ678013 DQ677961 DQ677908
Sporormiella minima CBS 524.50 DQ678056 DQ678003 DQ677950 DQ677897
Stagonospora macropycnidia CBS 114202 GU301873 GU296198 GU349026
Tetraploa aristata CBS 996.70 AB524627 AB524486 AB524836
Tetraplosphaeria nagasakiensis MAFF 239678 AB524630 AB524489 AB524837
Lophiostoma macrostomoides GKM1033 GU385190 GU327776
Lophiostoma macrostomoides GKM1159 GU385185 GU327778
Thyridaria rubronotata CBS 419.85 GU301875 GU371728 GU349002
Tingoldiago graminicola KH 68 AB521743 AB521726
Trematosphaeria pertusa CBS 122368 FJ201990 FJ201991 FJ795476 GU456276
Trematosphaeria pertusa CBS 122371 GU301876 GU348999 GU371801 GU349085
Trematosphaeria pertusa SMH 1448 GU385213
Triplosphaeria cylindrica MAFF 239679 AB524634 AB524493
Triplosphaeria maxima MAFF 239682 AB524637 AB524496
Triplosphaeria yezoensis CBS 125436 AB524638 AB524497 AB524844
Ulospora bilgramii CBS 110020 DQ678076 DQ678025 DQ677974 DQ677921
Verruculina enalia BCC 18401 GU479802 GU479770 GU479835 GU479863
Verruculina enalia BCC 18402 GU479803 GU479771 GU479836 GU479864
Westerdykella cylindrica CBS 454.72 AY004343 AY016355 DQ470925 DQ497610
Westerdykella dispersa CBS 508.75 DQ468050 U42488
Westerdykella ornata CBS 379.55 GU301880 GU296208 GU371803 GU349021
Wicklowia aquatica AF289-1 GU045446
Wicklowia aquatica CBS 125634 GU045445 GU266232
Xenolophium applanatum CBS 123123 GU456329 GU456312 GU456354 GU456269
Xenolophium applanatum CBS 123127 GU456330 GU456313 GU456355 GU456270
Zopfia rhizophila CBS 207.26 DQ384104 L76622
1

BCC Belgian Coordinated Collections of Microorganisms; CABI International Mycological Institute, CABI-Bioscience, Egham, Bakeham Lane, U.K.; CBS Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; DAOM Plant Research Institute, Department of Agriculture (Mycology), Ottawa, Canada; DUKE Duke University Herbarium, Durham, North Carolina, U.S.A.; HHUF Herbarium of Hirosaki University, Japan; IFRDCC Culture Collection, International Fungal Research & Development Centre, Chinese Academy of Forestry, Kunming, China; MAFF Ministry of Agriculture, Forestry and Fisheries, Japan; NBRC NITE Biological Resource Centre, Japan; OSC Oregon State University Herbarium, U.S.A.; UAMH University of Alberta Microfungus Collection and Herbarium, Edmonton, Alberta, Canada; UME Herbarium of the University of Umeå, Umeå, Sweden; Culture and specimen abbreviations: ANM A.N. Miller; CPC; P.W. Crous; EB E.W.A. Boehm; EG E.B.G. Jones; GKM G.K. Mugambi; JK J. Kohlmeyer; KT K. Tanaka; SMH S.M. Huhndorf