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. Author manuscript; available in PMC: 2013 Dec 14.
Published in final edited form as: J Mol Biol. 2012 Oct 13;424(5):257–269. doi: 10.1016/j.jmb.2012.10.005

Figure 1. Defective-RNAs are detected by virtue of their unique recombination junctions.

Figure 1

Defective-RNAs that have been previously characterized in FHV infections are formed by recombination withinA) FHV RNA 1 to form R1D1626 and B) FHV RNA 2 to form R2D675. These recombination events generate unique junction sequences,labeleda-i for reference in Figure 2. Reads from the FHV-RNAseq dataset were mapped to these sequences and are indicated underneath the schematic for each Defective-RNA to illustrate their mapping over the recombination junction sites.