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. Author manuscript; available in PMC: 2009 Nov 10.
Published in final edited form as: Cancer Inform. 2007 Dec 12;3:379–397.

Table 1.

Gene and Protein Databases.

Database Full name Comments Website Ref
NCBI GenBank NIH genetic sequence database An international DNA sequence database www.ncbi.nlm.nih.gov/Genbank [45]
EMBL Nucleotide Sequence Database/EMBL-Bank European Molecular Biology Laboratory Nucleotide Sequence Database Collection of DNA and RNA sequences in Europe and is synchronized with GenBank at NCBI and DDBJ in Japan. www.ebi.ac.uk/embl [46]
DDBJ DNA Data Bank of Japan Nucleotide sequence database in Japan and in collaboration with EMBL and NCBI GenBank www.ddbj.nig.ac.jp [47]
Entrez Gene - NCBI database that focuses on gene-to-sequence relationship and provides gene-specific information. www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene [5]
RefSeq NCBI Reference Sequences NCBI collection of non-redundant set of DNA, RNA, and protein sequences. www.ncbi.nlm.nih.gov/RefSeq [72]
UniGene NCBI UniGene Partitions GenBank sequences into sets of transcript sequences that are likely to represent distinct genes. www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene [73]
Ensembl - A source for comparative chordate genome sequences and gene annotation at EBI/Sanger. www.ensembl.org [74]
UCSC Genome Browser Database University of California Santa Cruz Genome Browser Database Human genome assembly and customizable track browsers at UCSC. genome.ucsc.edu/bestlin ks.html [75]
UniProtKB/TrEMBL Universal Protein Resource Knowledgebase/Translated European Molecular Biology Laboratories Computer-curated protein sequence database containing translations of all coding sequences in EMBL/GenBank/DDBJ and also other protein sequences from the literature. www.ebi.ac.uk/trembl [49]
UniProtKB/Swiss-Prot Protein Knowledgebase Universal Protein Resource Knowledgebase Manually-curated protein sequence database providing publicly available information about protein sequences. www.ebi.ac.uk/swissprot [49]