Gene WB ID	Sequence Name Gene	Gene Public Name	Target genes	References for C. elegans transcription factor targets and binding site data
WBGene00000096	C41G7.5	ahr-1	in vitro binding	(Powell-Coffman et al., 1998; PMID 9501178)
WBGene00044330	R08B4.2	alr-1	ChIP, ceh-23, F55B11.4, lbp-8, mir-77	(Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00019424	K06A1.1	aptf-1	dac-1, ech-6, fat-2, H32C10.3, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020368	T08H4.3	ast-1	cat-2, cat-4, dat-1, cat-1, bas-1, M01D1.2, tra-1	(Deplancke et al., 2006; PMID 16777607; Flames and Hobert, 2009; PMID 19287374)
WBGene00000220	K08F8.2	atf-2	lin-48	(Wang et al., 2006; PMID 16310763)
WBGene00000223	C07G2.2	atf-7	unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00008081	C44B9.4	athp-1	daf-3, pop-1, acs-11, ceh-23, cog-1, dac-1, ech-6, egg-2, elo-2, F55B11.4, fat-2, nhr-86, unc-86, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00013799	Y116A8C.22	athp-3	mir-243	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00015075	B0238.11	B0238.11	lin-4	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00012943	Y47D3B.9	bed-2	nhr-28, acs-11, cyp-35A3, egg-2, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003847	F25D7.3	blmp-1	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00045215	C02F12.10	C02F12.10	F55B11.4, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00016310	C32D5.1	C32D5.1	acs-11, C15C7.5, ceh-23, cog-1, cyp-35A3, dac-1, daf-12, ech-6, egg-2, elo-2, elt-4, F55B11.4, far-7, fat-2, fat-4, nhr-137, nhr-178, nhr-86, T23F11.4, unc-86, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00016712	C46E10.8	C46E10.8	fat-2, mir-243	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00016725	C46H3.2	C46H3.2	mir-77	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000428	F16H11.4	ceh-1	acs-11, ceh-23, cog-1, cyp-35A5, dac-1, elt-4, F55B11.4, lbp-8, nhr-178, nhr-68, nhr-86, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000435	W03A3.1	ceh-10	ceh-23 and 38 other AIY terminal genes, acs-11, C15C7.5, ech-6, elo-2, nhr-68	(Wenick and Hobert, 2004; PMID 15177025; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000438	F46C8.5	ceh-14	ChIP, K07D4.6, acs-11, ceh-23, cog-1, dac-1, ech-6, F55B11.4, fat-2, nhr-178, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000440	D1007.1	ceh-17	daf-3, C15C7.5, ceh-23, cog-1, dac-1, ech-6, F55B11.4, gpd-3, lbp-8, mir-243, mir-77, nhr-68, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000441	ZC64.3	ceh-18	elo-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000442	F20D12.6	ceh-19	cog-1, hlh-15, lbp-8	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000443	F31E3.1	ceh-20	mls-2, psa-3, hlh-8, W01C9.1, acs-11, C06E7.3, F59F5.2, nhr-178, T23F11.4, vha-15	(Arata et al., 2006; PMID 16824957; Deplancke et al., 2006; PMID 16777607; Jiang et al., 2008; PMID 18316179; Liu and Fire, 2000; PMID 11060243; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000445	F29F11.5	ceh-22	myo-2, ceh-22	(Berger et al., 2006; PMID 16998473; Kuchenthal et al., 2001; PMID 11783006; Okkema and Fire, 1994; PMID 7925019)
WBGene00000451	C33D12.7	ceh-30	ChIP, ceh-23, cog-1, cyp-35A5, elt-4, hlh-15, nhr-68, vha-15	(Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000452	C33D12.1	ceh-31	acs-11, ceh-23, cog-1, cyp-35A5, ech-6, elt-4, F55B11.4, hlh-15, lbp-8, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000455	C10G8.6	ceh-34	egl-1, pqn-60	(Deplancke et al., 2006; PMID 16777607; Hirose et al., 2010; PMID 20713707)
WBGene00000457	C37E2.4	ceh-36	ceh-23	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000458	C37E2.5	ceh-37	ceh-23, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000459	F22D3.1	ceh-38	elt-4, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000460	T26C11.7	ceh-39	nhr-86, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000463	C28A5.4	ceh-43	elt-4, ceh-23, cog-1, cyp-35A5, dac-1, elt-4, F55B11.4, lbp-8, nhr-178, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00022837	ZK993.1	ceh-45	ceh-23, mir-243, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00015934	C17H12.9	ceh-48	sma-3, ztf-4, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00017538	F17A9.6	ceh-49	F38B6.1	(Deplancke et al., 2006; PMID 16777607)
WBGene00013583	Y80D3A.3	ceh-51	unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020485	T13C5.4	ceh-54	ech-6	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00007417	C07E3.6	ceh-58	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000431	K02B12.1	ceh-6	aqp-8, acs-11, ceh-23, ech-6, egg-2, elo-2, lbp-8	(Mah et al., 2007; PMID 17660295; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011069	R06F6.6	ceh-62	acs-11, ceh-23, cog-1, cyp-35A5, dac-1, elt-4, F55B11.4, fat-2, lbp-8, nhr-178, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000433	ZK265.4	ceh-8	M01D1.2, acdh-1, C15C7.5, ceh-23, cog-1, dac-1, ech-6, egg-2, F55B11.4, far-7, hlh-15, lbp-8, nhr-178, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000434	Y65B4BR.9	ceh-9	ceh-23, cog-1, cyp-35A5, elt-4, F55B11.4, lbp-8, nhr-68, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00019864	R04A9.5	ceh-93	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000468	F43G9.11	ces-1	egl-1, B0507.1, ztf-4, C30F12.1	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2009; PMID 19372275; Thellmann et al., 2003; PMID 12874127; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000469	ZK909.4	ces-2	ces-1, lin-48	(Metzstein and Horvitz, 1999; PMID 10518212; Wang et al., 2006; PMID 16310763)
WBGene00000473	F46F11.2	cey-2	die-1, F09F3.6	(Deplancke et al., 2006; PMID 16777607)
WBGene00000476	T23D8.8	cfi-1	in vitro binding, K07D4.6, cog-1, F55B11.4	(Deplancke et al., 2006; PMID 16777607; Shaham and Bargmann, 2002; PMID 11959845; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000483	C55B7.12	che-1	cog-1, gcy-5, gcy-7, lim-6, lsy-6, ceh-36	(Chang et al., 2003; PMID 12952888; Etchberger et al., 2009; PMID 19060335; O'Meara et al., 2009; PMID 19189954)
WBGene00000561	C34E10.7	cnd-1	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00000584	R03C1.3	cog-1	cyp-35A5, F55B11.4, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000793	Y41C4A.4	crh-1	T23G5.3	(Deplancke et al., 2006; PMID 16777607)
WBGene00008386	D1081.8	D1081.8	mir-243	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000895	B0412.1	dac-1	acs-11, C30F12.1, ceh-23, cog-1, cyp-35A3, dac-1, elo-2, F55B11.4, F59F5.2, fat-2, nhr-86, T23F11.4, unc-86, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000908	F11A1.3	daf-12	ceh-22, myo-2, many others, in vitro binding	(Ao et al., 2004; PMID 15375261; Shostak et al., 2004; PMID 15489294)
WBGene00000912	R13H8.1	daf-16	ChIP	(Furuyama et al., 2000; PMID 10880363; Lee et al., 2003; PMID 12690206; McElwee et al., 2003; PMID 12882324; Oh et al., 2006; PMID 16380712)
WBGene00000914	F33H1.1	daf-19	xbx-1, nph-1, nph-4, daf-19	(Deplancke et al., 2006; PMID 16777607; Schafer et al., 2003; PMID 12802075; Winkelbauer et al., 2005; PMID 16291722)
WBGene00000899	F25E2.5	daf-3	myo-2, mdl-3, mdl-1, dhs-25, his-14, lin-4, lpd-2, nhr-86, T23F11.4	(Deplancke et al., 2006; PMID 16777607; Thatcher et al., 1999; PMID 9834189; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00000904	R05D11.1	daf-8	nhr-68, T23G5.3	(Deplancke et al., 2006; PMID 16777607)
WBGene00000995	C18D1.1	die-1	bar-1, C04F12.9, C18A11.1, ceh-13, daf-3, emb-5, F25E5.2, fat-5, ges-1, inx-6, K07D4.6, lin-48, mab-23, nhr-28, nhr-68, pos-1, pqn-26, R06F6.6, sma-3, T14G10.4, T22H9.4, tra-1, W06F12.3, Y38H6C.14, Y49E10.4, zag-1, ztf-4, acs-11, C15C7.5, ceh-23, cog-1, cyp-35A3, dac-1, daf-12, ech-6, egg-2, elo-2, elt-4, F55B11.4, fat-2, fat-6, lin-4, mir-243, nhr-137, nhr-178, nhr-68, nhr-86, T23F11.4, unc-86, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00007929	C34D1.1	dmd-10	elt-4, F55B11.4, nhr-68, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00012832	Y43F8C.10	dmd-3	ceh-23, egg-2, elt-4, F55B11.4	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00007776	C27C12.6	dmd-4	elt-4, sma-3, acs-11, ceh-23, cog-1, dac-1, ech-6, egg-2, F55B11.4, fat-2, unc-86, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00017326	F10C1.5	dmd-5	elt-4, acs-11, ceh-23, cog-1, dac-1, ech-6, egg-2, elt-4, F55B11.4, fat-2, lin-4, mir-243, unc-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00007058	F13G11.1	dmd-6	acs-11, cog-1, fat-2, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00019521	K08B12.2	dmd-7	gpd-3	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020708	T22H9.4	dmd-8	ceh-23	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001029	F38A5.13	dnj-11	lin-4	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001079	T22B3.1	dpy-20	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00009584	F40F9.7	drap-1	cog-1, fat-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001096	C18B12.3	dsc-1	C15C7.5, T23F11.4, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001155	T05G5.6	ech-6	C04F12.9	(Deplancke et al., 2006; PMID 16777607)
WBGene00001186	F55A8.1	egl-18	elt-4	(Deplancke et al., 2006; PMID 16777607)
WBGene00001194	C04A2.3	egl-27	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00001204	C04G2.7	egl-38	lin-48, in vitro binding	(Johnson et al., 2001; PMID 11532910; Zhang et al., 2005; PMID 15923112)
WBGene00001208	F28B12.2	egl-44	C04F12.9, fat-5, lin-48, M01D1.2, med-2, nhr-28, acs-11, C30F12.1, dac-1, fat-2, fat-4, mir-243, nhr-8, opt-2, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001174	C08C3.1	egl-5	ChIP, acs-11, ceh-23, cog-1, cyp-35A5, dac-1, elt-4, F55B11.4, fat-2, hlh-15, lbp-8, nhr-68, nhr-86, Y57A10A.27	(Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001249	W09C2.1	elt-1	bioinformatics, msp-113, ceh-13, peb-1, far-7, mir-77	(del Castillo-Olivares et al., 2009; PMID 19591818; Deplancke et al., 2006; PMID 16777607; Shim, 1999; PMID 10597043; Shim et al., 1995; PMID 7473742; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001250	C33D3.1	elt-2	SAGE, ref-1, ges-1, pho-1, mtl-1, mtl-2, ceh-13, elt-4, ges-1, peb-1, elt-4, F55B11.4, mir-77, nhr-8	(Deplancke et al., 2006; PMID 16777607; Egan et al., 1995; PMID 7649372; Fukushige et al., 2005; PMID 15733671; McGhee et al., 2007; PMID 17113066; Moilanen et al., 1999; PMID 10514435; Neves et al., 2007; PMID 18003741; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001251	K02B9.4	elt-3	ChIP, ceh-13, elt-4, ges-1, peb-1, elt-4, F55B11.4, mir-77	(Deplancke et al., 2006; PMID 16777607; Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001252	C39B10.6	elt-4	mir-243	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001253	F52C12.5	elt-6	elt-4, F55B11.4, mir-77, nhr-178	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00015981	C18G1.2	elt-7	elt-4, F55B11.4, mir-77	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001310	F58E10.2	end-1	in vitro binding, exp-2, mir-77	(Deplancke et al., 2006; PMID 16777607; Shoichet et al., 2000; PMID 10760276; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001311	F58E10.5	end-3	ceh-13, ges-1, mir-77	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001324	R11E3.6	eor-1	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00017687	F22A3.1	ets-4	mab-23	(Deplancke et al., 2006; PMID 16777607)
WBGene00016600	C42D8.4	ets-5	B0507.1, bar-1, pqn-67, tra-1, inx-6	(Deplancke et al., 2006; PMID 16777607)
WBGene00001377	C49A1.4	eya-1	unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00013147	Y53C12C.1	eyg-1	nhr-178	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00008587	F08G12.3	F08G12.3	dac-1, F59F5.2, gpd-3, mdt-15, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00008640	F10B5.3	F10B5.3	mir-243, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00009174	F26H9.2	F26H9.2	mir-77, nhr-86, opt-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00009827	F47G4.6	F47G4.6	C49C3.5	(Deplancke et al., 2006; PMID 16777607)
WBGene00001400	F56E3.4	fax-1	in vitro binding	(DeMeo et al., 2008; PMID 18179707)
WBGene00001436	C29F7.5	fkh-4	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001438	B0286.5	fkh-6	elt-4, F55B11.4, nhr-68, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001440	F40H3.4	fkh-8	C18A11.1	(Deplancke et al., 2006; PMID 16777607)
WBGene00012435	Y11D7A.12	flh-1	lin-4, mir-241, mir-48, mir-53, mir-59, and mir-358-357	(Ow et al., 2008; PMID 18794349; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00016138	C26E6.2	flh-2	lin-4	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001345	F29G9.4	fos-1	egl-13	(Oommen and Newman, 2007; PMID 17942488)
WBGene00010453	K01B6.1	fozi-1	acs-11, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001568	F32H2.1	gei-11	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00008092	C44F1.2	gmeb-3	mir-243, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00007732	C25G4.4	gmeb-4	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001707	Y48G8AR.1	grh-1	dbl-1, mab-5, pcn-1	(Venkatesan et al., 2003; PMID 12888489)
WBGene00010353	H02I12.5	H02I12.5	C30G12.1, ceh-13, dpr-1, nhr-28, hlh-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001824	F13D11.2	hbl-1	let-7	(Roush and Slack, 2009; PMID 19627983)
WBGene00001948	B0304.1	hlh-1	ChIP, PBM	(Blackwell et al., 1994; PMID 7939715; De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181; Krause et al., 1992; PMID 1338434; Lei et al., 2010; PMID 21209968; Niu et al., 2011; PMID 21177963)
WBGene00001954	ZK682.4	hlh-10	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001955	F58A4.7	hlh-11	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001958	C18A3.8	hlh-14	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001959	C43H6.8	hlh-15	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001962	F57C12.3	hlh-19	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001949	M05B5.5	hlh-2	lin-3, egl-1, lag-2	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181; Hwang and Sternberg, 2004; PMID 14660442; Karp and Greenwald, 2003; PMID 14701877; Thellmann et al., 2003; PMID 12874127)
WBGene00001964	C17C3.7	hlh-25	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001965	C17C3.8	hlh-26	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001966	C17C3.10	hlh-27	PBM, gpd-3, lin-4	(Grove et al., 2009; PMID 196321817; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001968	F31A3.4	hlh-29	PBM	(Grove et al., 2009; PMID 19632181)
WBGene00001950	T24B8.6	hlh-3	egl-1, PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181; Krause et al., 1997; PMID 9187144; Thellmann et al., 2003; PMID 12874127)
WBGene00020930	W02C12.3	hlh-30	PBM, mir-243	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001951	T05G5.2	hlh-4	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00001953	C02B8.4	hlh-8	arg-1, ceh-24, egl-15, mls-1	(Corsi et al., 2000; PMID 10769229; De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181; Harfe and Fire, 1998; PMID 9425137; Harfe et al., 1998; PMID 9716413; Kostas and Fire, 2002; PMID 11799068; Zhao et al., 2007; PMID 17369030)
WBGene00018786	F54A5.1	hmbx-1	nhr-8	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001971	Y48B6A.14	hmg-1.1	F52B11.5, sma-3	(Deplancke et al., 2006; PMID 16777607)
WBGene00001976	T05A7.4	hmg-11	unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00002004	Y53C10A.12	hsf-1	in vitro binding	(Enoki and Sakurai, 2011; PMID 21510947)
WBGene00007984	C36F7.1	irx-1	inx-6	(Deplancke et al., 2006; PMID 16777607)
WBGene00012005	T24H10.7	jun-1	egl-13	(Oommen and Newman, 2007; PMID 17942488)
WBGene00002245	K08B4.1	lag-1	hlh-6, ref-1	(Christensen et al., 1996; PMID 8625826; Ghai and Gaudet, 2008; PMID 18706403; Neves et al., 2007; PMID 18003741)
WBGene00002601	F26B1.7	let-381	ceh-34, F55B11.4	(Amin et al., 2010; PMID 20335356; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00002990	C37F5.1	lin-1	lin-39, T23F11.4	(Miley et al., 2004; PMID 15342509; Wagmaister et al., 2006; PMID 16782085; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003000	ZC247.3	lin-11	ChIP, acs-11, cog-1, dac-1, F55B11.4, nhr-178, vha-15, Y57A10A.27	(Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003002	C03B8.4	lin-13	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00003003	T25C12.1	lin-14	ins-33	(Hristova et al., 2005; PMID 16314527)
WBGene00023497	ZK662.4	lin-15B	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00003012	F18A1.2	lin-26	hlh-6, inx-6, lin-48, M01D1.2, tra-1, gpd-3, hlh-15, mir-77, ref-2	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003015	W03C9.4	lin-29	col-19	(Rougvie and Ambros, 1995; PMID 7671813)
WBGene00003018	T14F9.5	lin-32	PBM	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181)
WBGene00003024	C07H6.7	lin-39	hlh-8, egl-17, egl-18/elt-5, elt-6, possible direct repressor of eff-1, cog-1, dac-1, elt-4, F55B11.4, nhr-86, Y57A10A.27	(Cui and Han, 2003; PMID 12710960; Koh et al., 2002; PMID 12399309; Liu and Fire, 2000; PMID 11060243; Niu et al., 2011; PMID 21177963; Shemer and Podbilewicz, 2002; PMID 12502736; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003033	F34D10.5	lin-48	B0507.1	(Deplancke et al., 2006; PMID 16777607)
WBGene00003037	JC8.6	lin-54	ChIP, ceh-2, dpr-1, ets-4, ges-1, inx-6, K07D4.6, nhr-68, pos-1, tra-1, Y38H6C.14, ztf-4, acs-11, ceh-23, cyp-35A3, cyp-35A5, ech-6, egg-2, elo-2, F55B11.4, fat-6, nhr-137, nhr-68, T23F11.4, unc-86, vha-15, ztf-27	(Deplancke et al., 2006; PMID 16777607; Tabuchi et al., 2011; PMID 21589891; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003044	F18A1.3	lir-1	sma-3, gpd-3	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00009937	F52F12.4	lsl-1	T23G5.3, mir-243	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003087	F49H12.1	lsy-2	T23G5.3, daf-12, mir-243, unc-86	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003114	C32C4.5	mab-23	K07D4.6	(Deplancke et al., 2006; PMID 16777607)
WBGene00003100	Y53C12B.5	mab-3	vit-2, other vits, nhr-178	(Yi and Zarkower, 1999; PMID 9927589; Reece-Hoyes et al., 2011; PMID 2203770)
WBGene00003102	C08C3.3	mab-5	ChIP, elt-4, pop-1, acs-11, C06E7.3, ceh-23, cog-1, elt-4, F55B11.4, fat-2, lbp-8, nhr-178, nhr-86, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 2203770)
WBGene00021942	Y55F3BR.5	madf-1	acs-11, cog-1, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011315	T01C1.2	mbr-1	fat-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003163	R03E9.1	mdl-1	ChIP	(De Masi et al., 2011; PMID 21335608; Grove et al., 2009; PMID 19632181; Niu et al., 2011; PMID 21177963)
WBGene00003167	F01D4.6	mec-3	mec-4, mec-7, see also UNC-86, fat-2, vha-15	(Duggan et al., 1998; PMID 9735371; Way and Chalfie, 1988; PMID 2898300; Reece-Hoyes et al., 2011; PMID 2203770)
WBGene00003180	T24D3.1	med-1	end-1, end-3	(Broitman-Maduro et al., 2005; PMID 15737937)
WBGene00003182	W10D5.1	mef-2	str-1	(Choi et al., 2002; PMID 12054517; Dichoso et al., 2000; PMID 10882527; van der Linden et al., 2007; PMID 17170704)
WBGene00003218	M04B2.1	mep-1	ChIP, dac-1	(Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 2203770)
WBGene00003241	T05C12.6	mig-5	acs-11, acs-2, C30F12.1, ceh-23, cog-1, dac-1, daf-12, ech-6, egg-2, elo-2, elt-4, far-7, fat-2, fat-4, H32C10.3, hlh-15, lin-4, mdt-15, mir-243, nhr-86, opt-2, T23F11.4, unc-86, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003377	C39E6.4	mls-2	elt-4, K07D4.6, acs-11, ceh-23, cog-1, cyp-35A3, cyp-35A5, dac-1, ech-6, egg-2, elo-2, elt-4, F55B11.4, F59F5.2, fat-2, fat-7, hlh-15, lbp-8, nhr-178, nhr-68, nhr-86, tag-257, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003509	T19B10.11	mxl-1	bioinformatics	(De Masi et al., 2011; PMID 21335608)
WBGene00003510	F40G9.11	mxl-2	F25E5.2	(Deplancke et al., 2006; PMID 16777607)
WBGene00003511	F46G10.6	mxl-3	bioinformatics, mir-243	(De Masi et al., 2011; PMID 21335608; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003592	ZK1290.4	nfi-1	in vitro binding, in vitro binding, cog-1, dac-1, fat-2, nhr-86, unc-86, vha-15	(Lazakovitch et al., 2005; PMID 16242019; Whittle et al., 2009; PMID 19584245; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003600	R09G11.2	nhr-1	ceh-23, dhs-25, elt-4, nhr-137, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003609	B0280.8	nhr-10	T14G10.4, acdh-1, dhs-25, elt-4, fat-4, gpd-3, nhr-137, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003692	T06C12.6	nhr-102	dhs-25, mir-243, nhr-178, nhr-8, ref-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003695	C06G3.1	nhr-105	dac-1, elt-4, F55B11.4, fat-2, mir-243, unc-86, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003699	T12C9.5	nhr-109	C04F12.9, nhr-178, nhr-86, ref-2	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003610	ZC410.1	nhr-11	nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003701	F44G3.9	nhr-111	bar-1, elo-6, ets-4, exp-2, inx-6, mab-23, sma-3, ZK682.5, dhs-25, egg-2, F59F5.2, gpd-3, mdt-15, mir-243, nhr-178, nhr-68, nhr-8, nhr-86, unc-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003611	R04B5.4	nhr-12	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003728	C28D4.9	nhr-138	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003613	T01B10.4	nhr-14	ges-1, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00018430	F44E7.8	nhr-142	ceh-13, lin-48, ceh-23, dhs-25, mir-243, nhr-178, nhr-86, ref-2, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00015395	C03G6.8	nhr-147	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003615	T12C9.6	nhr-16	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003616	C02B4.2	nhr-17	fat-2, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00017510	F16B4.9	nhr-178	nhr-178	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00018541	F47C10.3	nhr-186	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003601	C32F10.6	nhr-2	peb-1, dhs-25	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003619	F43C1.4	nhr-20	F59F5.2, mir-243, nhr-86, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011002	R04B5.3	nhr-205	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003621	K06A1.4	nhr-22	tra-1, nhr-86	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003622	C01H6.5	nhr-23	in vitro binding, egl-46, F53B3.3, inx-6	(Deplancke et al., 2006; PMID 16777607; Kostrouchova et al., 1998; PMID 9521900)
WBGene00012596	Y38E10A.18	nhr-234	ceh-24, nhr-68, nhr-86, T23F11.4	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00021610	Y46H3D.6	nhr-237	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003623	F11C1.6	nhr-25	lin-3, unc-86, vha-15	(Hwang and Sternberg, 2004; PMID 14660442; ; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00022805	ZK697.2	nhr-256	nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00010410	H22D14.1	nhr-267	acs-11, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020460	T12C9.1	nhr-273	C15C7.5, cyp-35A3, nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003624	C11G6.4	nhr-28	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003602	H01A20.1	nhr-3	ceh-23, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003625	C26B2.3	nhr-31	bioinformatics	(Hahn-Windgassen and Van Gilst, 2009; PMID 19668342)
WBGene00013976	ZK455.6	nhr-33	gpd-3, mir-243, nhr-178, nhr-86, ref-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003627	F58G6.5	nhr-34	exp-2, acs-11, ceh-23, nhr-137, nhr-8, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003628	C07A12.3	nhr-35	exp-2, fat-2	(Deplancke et al., 2006; PMID 16777607)
WBGene00018412	F44C4.2	nhr-37	nhr-178	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003603	F32B6.1	nhr-4	exp-2, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00022423	Y104H12A.1	nhr-41	dhs-25	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003632	C33G8.6	nhr-42	mir-243, nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003633	C29E6.5	nhr-43	hlh-6, ech-6, lin-4, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003635	F16H11.5	nhr-45	daf-3, nhr-178, nhr-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003636	C45E5.6	nhr-46	exp-2	(Deplancke et al., 2006; PMID 16777607)
WBGene00003637	C24G6.4	nhr-47	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003639	K10C3.6	nhr-49	ceh-23, dhs-25, elt-4, nhr-137, nhr-178, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003604	Y73F8A.21	nhr-5	elt-4, gpd-3, lin-4, nhr-137, unc-86, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003643	K06B4.11	nhr-53	nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003605	C48D5.1	nhr-6	in vitro binding, C06E7.3, F59F5.2, far-7, H32C10.3	(Heard et al., 2010; PMID 20506374; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003656	T09A12.4	nhr-66	C18A11.1, cog-1, dac-1, fat-2, nhr-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003657	C08F8.8	nhr-67	T05B4.8, nhr-137, nhr-178, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003659	T23H4.2	nhr-69	exp-2, M01D1.2	(Deplancke et al., 2006; PMID 16777607)
WBGene00003660	Y51A2D.17	nhr-70	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003661	K11E4.5	nhr-71	nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003662	C17A2.8	nhr-72	acs-11, C15C7.5, cyp-35A3, dac-1, ech-6, elo-2, elt-4, F55B11.4, F59F5.2, fat-2, mir-243, nhr-137, nhr-86, T23F11.4, unc-86, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003668	F36A4.14	nhr-78	nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003669	T26H2.9	nhr-79	nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003607	F33D4.1	nhr-8	pqn-60	(Deplancke et al., 2006; PMID 16777607)
WBGene00003674	T06C12.7	nhr-84	pqn-60, nhr-178	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003676	Y40B10A.8	nhr-86	egg-2, nhr-178, nhr-86, ref-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003678	K08A2.5	nhr-88	ceh-23, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003682	Y41D4B.8	nhr-92	cog-1, dac-1, fat-2, nhr-86, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003686	F44C8.11	nhr-96	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003689	M02H5.1	nhr-99	nhr-68	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003779	Y75B8A.2	nob-1	psa-3	(Arata et al., 2006; PMID 16824957)
WBGene00044508	C18F3.4	nsy-7	srsx-3, ceh-23, cog-1	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003845	B0280.4	odd-1	sma-1, tra-1	(Deplancke et al., 2006; PMID 16777607)
WBGene00003854	T18D3.2	odr-7	cdr-4, ceh-24, daf-16, daf-3, emb-5, F26A10.2, ges-1, hlh-6, nhr-68, R06F6.6, T22C8.3, zag-1, cog-1, cyp-35A3, ech-6, egg-2, F55B11.4, F59F5.2, fat-2, gpd-3, lin-4, mir-243, nhr-178, nhr-68, nhr-8, nhr-86, ref-2, str-47, T23F11.4, unc-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003909	F45B8.4	pag-3	in vitro binding, T05B4.8, T14G10.4, nhr-178, nhr-8	(Deplancke et al., 2006; PMID 16777607; Zweidler-Mckay et al., 1996; PMID 8754800; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003912	C38D4.6	pal-1	hlh-1, daf-3, elt-4, inx-6, lin-29, lit-1, mab-23, T22H9.4, ceh-23, hlh-15, tag-257	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003937	K07C11.1	pax-1	lit-1	(Deplancke et al., 2006; PMID 16777607)
WBGene00007042	C26C6.1	pbrm-1	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003968	T14F9.4	peb-1	myo-2, dac-1, daf-12, nhr-86	(Beaster-Jones and Okkema, 2004; PMID 15165844; Thatcher et al., 2001; PMID 11203704; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00003976	T28H11.4	pes-1	ChIP	(Niu et al., 2011; PMID 21177963)
WBGene00004013	F38A6.1	pha-4	in vitro binding, ChIP, myo-2, ceh-22, hlh-3, nhr-178, nhr-68, many others	(Gaudet and Mango, 2002; PMID 11823633; Kalb et al., 1998; PMID 9584117; Niu et al., 2011; PMID 21177963; Okkema and Fire, 1994; PMID 7925019; Raharjo et al., 2010; PMID 20623595; Vilimas et al., 2004; PMID 14738885; Zhong et al., 2010; PMID 20174564; Reece-Hoyes et al., 2011; PMID 22037705
WBGene00004024	Y75B8A.1	php-3	ceh-5, R06F6.6, C06E7.3, cog-1, elt-4, F55B11.4, fat-2, hlh-15, nhr-178, nhr-68, tag-257, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004077	W10C8.2	pop-1	psa-3, ceh-22	(Arata et al., 2006; PMID 16824957; Lam et al., 2006; PMID 16461282)
WBGene00004096	F40F8.7	pqm-1	ChIP, pos-1, tra-1, dac-1, lin-4, mir-243, nhr-86, unc-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Niu et al., 2011; PMID 21177963; ; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004194	C34C6.6	prx-5	nhr-178	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00019878	R05D3.3	R05D3.3	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011060	R06C1.6	R06C1.6	daf-3, acs-11, cog-1, dac-1, fat-2, unc-86, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00021538	Y42H9AR.3	rabs-5	T23G5.3	(Deplancke et al., 2006; PMID 16777607)
WBGene00004334	T01E8.2	ref-1	bioinformatics	(De Masi et al., 2011; PMID 21335608)
WBGene00004335	C47C12.3	ref-2	ttx-3, dac-1, nhr-178, unc-86	(Bertrand and Hobert, 2009; PMID 19386265; ; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004393	B0414.2	rnt-1	rnt-1	(Shim and Lee, 2008; PMID 18158917)
WBGene00017406	F12E12.5	sdz-12	daf-12	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004764	K04G11.2	sel-7	elt-4	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004771	C32E12.5	sem-2	mir-77, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004773	F15C11.1	sem-4	cog-1, fat-2, vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004786	F44A6.2	sex-1	dhs-25, lin-4	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004804	T19E7.2	skn-1	ChIP, microarray, med-1, med-2, end-1, gcs-1, die-1, pop-1	(An and Blackwell, 2003; PMID 12869585; Blackwell et al., 1994; PMID 7939715; Carroll et al., 1997; PMID 9303538; Maduro et al., 2001; PMID 11463373; Niu et al., 2011; PMID 21177963; Oliveira et al., 2009; PMID 19575768; Walker et al., 2000; PMID 10764775
WBGene00013350	Y59A8B.13	slr-2	ceh-24	(Deplancke et al., 2006; PMID 16777607)
WBGene00004857	R13F6.9	sma-3	tra-1	(Deplancke et al., 2006; PMID 16777607)
WBGene00004858	R12B2.1	sma-4	unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00010868	M04G12.4	somi-1	acs-11, dac-1, mdt-15, nhr-86, T23F11.4, unc-86, vha-15, ztf-27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00004949	K08A8.2	sox-2	daf-3, sma-2, unc-86	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00012735	Y40B1A.4	sptf-3	F53B3.3	(Deplancke et al., 2006; PMID 16777607)
WBGene00013111	Y51H4A.17	sta-1	n.d.	(Wang and Levy, 2006; PMID 16873887)
WBGene00044068	ZK867.1	syd-9	daf-12, mir-243	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011864	T20F10.2	T20F10.2	opt-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020758	T24C4.2	T24C4.2	nhr-68	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006380	F31E8.3	tab-1	cyp-33C8, elt-4, F38B6.1, nhr-22, ztf-4, acs-2, C15C7.5, ceh-23, cyp-35A5, elt-4, far-7, fat-7, his-14, lbp-8, mdt-15, nhr-8, opt-2, ztf-27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006547	F40H6.4	tbx-11	acs-11, ceh-23, cog-1, dac-1, ech-6, egg-2, elo-2, elt-4, F55B11.4, fat-2, mir-243, nhr-178, nhr-8, nhr-86, T23F11.4, unc-86, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006549	Y59E9AR.3	tbx-30	vab-7	(Pocock et al., 2004; PMID 15102704)
WBGene00006552	Y66A7A.8	tbx-33	C15C7.5, dac-1, nhr-178, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006556	Y47D3A.12	tbx-37	egg-2, elo-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006557	C24H11.3	tbx-38	T05B4.8, T14G10.4, egg-2, elt-4	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006558	Y73F8A.16	tbx-39	cog-1, fat-2, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006559	Y73F8A.17	tbx-40	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006545	T07C4.2	tbx-8	ceh-24, dpr-1, ets-4, exp-2, fat-5, T14G10.4, acs-11, acs-2, C06E7.3, C30F12.1, ceh-23, cyp-35A5, daf-12, dhs-25, dop-3, ech-6, egg-2, elo-2, elt-4, F08F8.2, F55B11.4, F59F5.2, far-7, fat-2, fat-4, fat-6, fat-7, gpd-3, hlh-15, lin-4, lpd-2, mdt-15, nhr-137, nhr-178, nhr-68, nhr-8, nhr-86, opt-2, ref-2, str-47, T23F11.4, tag-257, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006546	T07C4.6	tbx-9	C06E7.3, C30F12.1, ceh-23, cyp-35A5, daf-12, dhs-25, dop-3, ech-6, egg-2, elo-2, elt-4, F55B11.4, far-7, fat-2, fat-4, fat-6, fat-7, gpd-3, lin-4, lpd-2, mir-243, nhr-137, nhr-178, nhr-8, ref-2, T23F11.4, tag-257, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006580	T23G4.1	tlp-1	daf-3, zag-1	(Deplancke et al., 2006; PMID 16777607)
WBGene00006604	Y47D3A.6	tra-1	xol-1, ceh-30, egl-1, mab-3, rnt-1	(Conradt and Horvitz, 1999; PMID 10458607; Deplancke et al., 2006; PMID 16777607; Hargitai et al., 2009; PMID 19906855; Peden et al., 2007; PMID 18056429; Yi et al., 2000; PMID 11003845; Yi and Zarkower, 1999; PMID 9927589; Zarkower and Hodgkin, 1993; PMI
WBGene00014232	ZK1128.6	ttll-4	F53B3.3	(Deplancke et al., 2006; PMID 16777607)
WBGene00006652	Y113G7A.6	ttx-1	ceh-23, nhr-68, nhr-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006654	C40H5.5	ttx-3	ceh-23 and 38 other AIY terminal genes	(Wenick and Hobert, 2004; PMID 15177025)
WBGene00006853	C47G2.2	unc-130	unc-129, ChIP, F55B11.4, fat-2, nhr-68	(Nash et al., 2000; PMID 11018016; Niu et al., 2011; PMID 21177963; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006743	Y16B4A.1	unc-3	odr-10	(Kim et al., 2005; PMID 16143323)
WBGene00006766	B0564.10	unc-30	unc-25, unc-47, ceh-23	(Eastman et al., 1999; PMID 10414952; Jin et al., 1994; PMID 7997265; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006744	F26C11.2	unc-4	VB motorneuron genes, F55B11.4	(Winnier et al., 1999; PMID 10557206; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006778	F58E6.10	unc-42	acdh-1, acs-11, C15C7.5, ceh-23, cog-1, cyp-35A5, dac-1, ech-6, egg-2, F55B11.4, F59F5.2, far-7, fat-2, hlh-15, lbp-8, mir-243, nhr-68, T23F11.4, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006796	T28F12.2	unc-62	W01C9.1	(Deplancke et al., 2006; PMID 16777607)
WBGene00006818	C30A5.7	unc-86	ceh-30, dac-1	(Peden et al., 2007; PMID 18056429; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006881	R07B1.1	vab-15	acs-11, C15C7.5, ceh-23, cog-1, cyp-35A5, dac-1, ech-6, egg-2, elt-4, F55B11.4, F59F5.2, fat-2, hlh-15, lbp-8, nhr-178, nhr-68, nhr-86, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006870	F14F3.1	vab-3	acs-11, ceh-23, cog-1, cyp-35A5, dac-1, ech-6, elt-4, F55B11.4, F59F5.2, fat-2, lbp-8, mir-243, nhr-137, nhr-178, nhr-68, vha-15, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00001514	C05D2.5	xnd-1	ceh-2, daf-3, K07D4.6, lin-48	(Deplancke et al., 2006; PMID 16777607)
WBGene00012471	Y17G7B.20	Y17G7B.20	nhr-86, Y57A10A.27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00012551	Y37D8A.11	Y37D8A.11	lpd-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00021411	Y38C9A.1	Y38C9A.1	egl-46, inx-6, acs-11, C06E7.3, cyp-35A3, ech-6, egg-2, F55B11.4, fat-2, fat-7, his-14, hlh-15, lbp-8, lin-4, lpd-2, mdt-15, mir-243, nhr-178, nhr-68, nhr-8, nhr-86, ref-2, str-47, Y57A10A.27, ztf-27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00013380	Y62E10A.14	Y62E10A.14	ceh-13, W06F12.3	(Deplancke et al., 2006; PMID 16777607)
WBGene00022042	Y65B4BR.5	Y65B4BR.5	exp-2	(Deplancke et al., 2006; PMID 16777607)
WBGene00006970	F28F9.1	zag-1	zag-1, F59F5.2	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00022562	ZC204.12	ZC204.12	C18A11.1, ceh-5, daf-3, die-1, elt-1, F13H10.1, K07D4.6, lin-48, nhr-28, pop-1, pos-1, pqn-60, sma-3, acs-11, C30F12.1, ceh-23, cog-1, cyp-35A3, dac-1, ech-6, egg-2, elo-2, F55B11.4, fat-2, fat-4, lpd-2, nhr-86, T23F11.4, unc-86, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00019327	K02F3.4	zip-2	nhr-68, mir-243	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00012330	W07G1.3	zip-3	ZK287.1	(Deplancke et al., 2006; PMID 16777607)
WBGene00021552	Y44E3B.1	zip-4	C18A11.1	(Deplancke et al., 2006; PMID 16777607)
WBGene00011130	R07H5.10	zip-6	dac-1	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00014253	ZK1320.3	ZK1320.3	cog-1	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00018833	F54F2.5	ztf-1	bar-1, C04F12.9, C18A11.1, ceh-13, daf-3, dpr-1, emb-5, end-3, ges-1, inx-6, K07D4.6, lin-48, M01D1.2, mab-23, nhr-28, pos-1, pqn-26, R06F6.6, sma-3, T14G10.4, tra-1, Y38H6C.14, Y49E10.4, zag-1, ztf-4,	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00009939	F52F12.6	ztf-11	M01D1.2, unc-86, vha-15, acs-11, C15C7.5, ceh-23, cog-1, cyp-35A3, dac-1, daf-12, dop-3, ech-6, egg-2, elo-2, F55B11.4, F59F5.2, far-7, fat-2, fat-4, fat-6, gpd-3, H32C10.3, lin-4, mdt-15, mir-243, nhr-137, nhr-68, nhr-8, nhr-86, str-47, T23F11.4, unc-86, vha-15, Y57A10A.27	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00018704	F52E4.8	ztf-13	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00010936	M163.2	ztf-14	vha-15	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011066	R06C7.9	ztf-15	ceh-23	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011639	T09A5.12	ztf-17	mir-77	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020848	T27B1.2	ztf-19	acs-11, cog-1, ech-6, elt-4, fat-2, nhr-68, unc-86	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00008762	F13G3.1	ztf-2	ZK682.5, B0507.1, fat-5, inx-6, M01D1.2, acs-11, egg-2	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00012988	Y48C3A.4	ztf-22	cog-1, fat-2	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00011661	T09F3.1	ztf-27	vha-15, ztf-27	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00016905	C53D5.4	ztf-3	daf-19, gpd-3, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00020399	T10B11.3	ztf-4	rnt-1	(Deplancke et al., 2006; PMID 16777607)
WBGene00012317	W06H12.1	ztf-6	lin-48, T23F11.4, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00009772	F46B6.7	ztf-7	daf-3	(Deplancke et al., 2006; PMID 16777607)
WBGene00022598	ZC395.8	ztf-8	pos-1, ZK682.5, acs-11, C30F12.1, ceh-23, cog-1, dac-1, ech-6, elo-2, far-7, fat-2, fat-4, mdt-15, nhr-86, str-47, vha-15	(Deplancke et al., 2006; PMID 16777607; Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00013966	ZK287.6	ztf-9	dac-1	(Reece-Hoyes et al., 2011; PMID 22037705)
WBGene00006999	F42G4.3	zyx-1	lin-4	(Reece-Hoyes et al., 2011; PMID 22037705)