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. Author manuscript; available in PMC: 2014 Jun 7.
Published in final edited form as: J Proteome Res. 2014 Feb 10;13(3):1647–1656. doi: 10.1021/pr401108d

Figure 1.

Figure 1

Data analysis workflow for label-free quantitative proteomics using LC-IMS-MSE acquisitions. We implemented MassLynx and PLGS for peak extraction, alignment and database search, Scaffold for spectra validation and protein quantitation, Perseus for statistical analysis, and STRING and Cytoscape for protein interactions analysis and network construction.