Organism/cell line/tissue	Xenopus laevis animal caps (dissected ectoderm) or whole embryos
Sex	Not specified
Sequencer or array type	Illumina HiSeq2000
Data format	FASTQ (raw); tab-delimited text files (processed)
Experimental factors	RNA-seq: wild-type control vs Rfx2 morphants (100 animal caps at developmental stage 20) ChIP-seq: GFP vs Rfx2-GFP (600 whole embryos at developmental stage 20)
Experimental features	Very brief experimental description
Consent	All raw sequencing data are free to use. Genome and gene annotation data is free to use for high-throughput experiment data analysis, such as RNA-seq, ChIP-seq, or proteomics. Otherwise, please contact us (Edward Marcotte marcotte@icmb.utexas.edu) or a member of the International Xenopus Genome Consortium (Daniel Rokhsar dsrokhsar@lbl.gov or Masanori Taira m_taira@biol.s.u-tokyo.ac.jp).
Sample source location	N/A