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. Author manuscript; available in PMC: 2016 Aug 1.
Published in final edited form as: Mol Oncol. 2015 Apr 2;9(7):1371–1383. doi: 10.1016/j.molonc.2015.03.008

Table 1. Top three networks identified in erlotinib-resistant HNSCC cell lines.

Network Rank
#1 #2 #3
FaDu Cal-27 Network Beta-catenin, Tcf(Lef), TCF7L2 (TCF4), Lef-1, Axin CREB1, G-protein alpha-s, CREM (activators), NF-AT1(NFATC2), PKA-reg (cAMP-dependent) TRAF6, NF-kB, IKK-gamma, RIPK1, TAK1(MAP3K7)
GO Processes canonical Wnt signaling pathway, Wnt signaling pathway, regulation of cell differentiation, regulation of developmental process epithelium development glucose metabolic process, hexose metabolic process, monosaccharide metabolic process, response to oxygen-containing compound, response to endogenous stimulus regulation of I-kappaB kinase/NF-kappaB signaling, toll-like receptor 4 signaling pathway, toll-like receptor signaling pathway, positive regulation of I-kappaB kinase/NF-kappaB signaling, positive regulation of NF-kappaB transcription factor activity
p-Value 1.19E-29 1.370E-18 8.850E-28
zScore 11.62 9.46 11.51
gScore 152.87 35.71 26.51
Network Androgen receptor, WNT, Frizzled, p21, LRP5 NF-kB, TLR4, I-kB, IL-1 beta, TIRAP (Mal) SARS2, SEZ6L2, ANTXR2, TCP1-zeta-2, ACSL5
GO Processes positive regulation of macromolecule metabolic process, regulation of cell cycle, positive regulation of metabolic process, Wnt signaling pathway, organ development MyD88-dependent toll-like receptor signaling pathway, toll-like receptor signaling pathway, positive regulation of defense response, toll-like receptor TLR6:TLR2 signaling pathway, toll-like receptor TLR1:TLR2 signaling pathway G-protein coupled purinergic nucleotide receptor signaling pathway, purinergic nucleotide receptor signaling pathway, G-protein coupled purinergic receptor signaling pathway, purinergic receptor signaling pathway, regulation of inhibitory postsynaptic membrane potential
p-Value 6.81E-09 1.02E-11 5.12E-48
zScore 9.35 11.75 32.64
gScore 221.85 151.75 32.64
SQ20B Network Beta-catenin, Tcf(Lef), TCF7L2 (TCF4), Lef-1, Axin CREB1, G-protein alpha-s, CREM (activators), NF-AT1(NFATC2), PKA-reg (cAMP-dependent) TRAF6, NF-kB, IKK-gamma, RIPK1, TAK1(MAP3K7)
GO Processes canonical Wnt signaling pathway, Wnt signaling pathway, regulation of cell differentiation, regulation of developmental process, epithelium development glucose metabolic process, hexose metabolic process, monosaccharide metabolic process, response to oxygen-containing compound, response to endogenous stimulus regulation of I-kappaB kinase/NF-kappaB signaling, toll-like receptor 4 signaling pathway, toll-like receptor signaling pathway, positive regulation of I-kappaB kinase/NF-kappaB signaling, positive regulation of NF-kappaB transcription factor activity
p-Value 1.190E-29 1.370E-18 8.850E-28
zScore 11.62 9.46 11.51
gScore 152.87 35.71 26.51
SCC-25 Network ESR1 (nuclear), TPL2(MAP3K8), IL-6, PKC-delta, HMGB1 GLCCI1, MBLAC2, NSL1, KPR2, Cathepsin F IFT52, FLJ32115, SDOS, DGCR2, C1orf74
GO Processes toll-like receptor TLR6:TLR2 signaling pathway, toll-like receptor TLR1:TLR2 signaling pathway, toll-like receptor 2 signaling pathway, positive regulation of defense response, positive regulation of response to stimulus succinate metabolic process, glycine decarboxylation via glycine cleavage system, single-organism metabolic process, succinyl-CoA metabolic process, glycine catabolic process cellular glucuronidation, uronic acid metabolic process, glucuronate metabolic process, flavonoid glucuronidation, flavonoid biosynthetic process
p-Value 8.33E-05 6.83E-37 8.97E-36
zScore 5.87 29.51 28.54
gScore 649.62 29.51 28.54