Table 3.
Pure R2 regions in hg38 assembly.
| SF | Location | Position in hg38 | Contig | Sizea (bp) | R2% | B-box % | HORs on dot-matrix |
|---|---|---|---|---|---|---|---|
| SF5 | 6q11.1 | chr6:61,326,977–61,336,104 | AMYH02013791.1b | 9127 | 78 | 2 | No HOR |
| SF5 | 6q11.1 | chr6:61,428,794–61,437,937 | FP325349.3b | 9143 | 78 | 2 | No HOR |
| SF5 | 7p11.2 | chr7:57,939,175–57,953,728 | AC138789.1 | 10,294 | 94 | 0 | No HOR |
| SF5 | 7q11.21 | chr7:62,536,194–62,564,614 | AC019063.4 | 24,011 | 83 | 2 | No HOR |
| SF5 | 10p11.1 | chr10:39,432,620–39,442,102 | ABBA01020709.1 | 6981 | 70 | 0 | No HOR |
| SF5 | 11p11.12 | chr11:48,806,070–48,814,307 | AC127495.2 | 8237 | 91 | 0 | No HOR |
| SF5 | 12q11 | chr12:37,632,794–37,639,361 | AC119042.9 | 6567 | 75 | 0 | No HOR |
| SF5 | 16p11.1 | chr16:36,001,814–36,022,913 | AC109490.3 | 21,099 | 94 | 0 | No HOR, duplication 4.8 kb, identity 97.5% |
| SF5 | 16p11.1 | chr16:36,079,689–36,090,000 | FP325312.10 | 10,311 | 93 | 0 | No HOR |
| SF5 | 20q11.1 | chr20:29,908,640–30,038,347 | ABBA01018540.1, GJ212117.1 | 128,442 | 80 | 0 | HOR 1.4 kb |
| SF5 | 20q11.1 | chr20:30,088,752–30,140,826 | FP565326.9 | 51,870 | 83 | 0 | HOR 1.4 kbc |
| SF5 | Xq11.1 | chrX:62,611,837–62,642,074 | BX544875.1 | 30,237 | 90 | 3 | No HOR |
a
Size has been corrected to exclude L1-repeats and gaps.
b
These contigs are partially segment duplications of each other.
c
This HOR is about 97% identical to the one in GJ212117.