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. Author manuscript; available in PMC: 2016 Dec 1.
Published in final edited form as: AJNR Am J Neuroradiol. 2015 Dec 31;37(6):1114–1121. doi: 10.3174/ajnr.A4648

Differential Gene Expression In Coiled Versus Flow Diverter-Treated Aneurysms: RNA Sequencing Analysis In Rabbit Aneurysm Model

Aymeric Rouchaud 1, Collin Johnson 1, Evan Thielen 1, Dana Schroeder 1, Yong-Hong Ding 1, Daying Dai 1, Waleed Brinjikji 1, Juan Cebral 1, David F Kallmes 1, Ramanathan Kadirvel 1
PMCID: PMC4907800  NIHMSID: NIHMS738400  PMID: 26721773

Abstract

Introduction

The biological mechanisms leading to aneurysm healing or rare complications such as delayed aneurysm ruptures after flow-diverter placement remain poorly understood. We used RNA-sequencing (RNA-seq) following implantation of coils or flow-diverters in elastase aneurysms in rabbits to identify genes and pathways of potential interest.

Methods

Aneurysms were treated with coils (n=5) or flow-diverters (n=4) or left untreated for controls (n=6). Messenger RNA were isolated from the aneurysms at 4 weeks following treatment. RNA samples were processed using RNA-seq technology and analyzed using the Ingenuity Pathway Analysis tool.

Results

Using RNA-seq for coiled versus untreated aneurysms, 464/9990 genes (4.6%) were differentially expressed (58 down-regulated, 406 up-regulated). Comparing flow-diverter versus untreated aneurysms, 177/10041 (1.8%) genes were differentially expressed (8 down-regulated, 169 up-regulated). Comparing flow-diverter versus coiled aneurysms, 13/9982 (0.13%) genes were differentially expressed (8 down-regulated, 5 up-regulated). Keratin 8 was overexpressed in flow-diverters versus coils. This molecule may potentially play a critical role in delayed ruptures due to plasmin production. We identified overregulation of apelin in flow-diverters supporting the preponderance of endothelialization, whereas we found overexpression of molecules implicated in wound healing (Dectin1 and HHIP) for coiled aneurysms. Furthermore, we identified metallopeptidases 1, 12 and 13 as overexpressed in coiled versus untreated aneurysms.

Conclusions

We observed different physiopathologic responses after endovascular treatment with different devices. Flow-diverters promote endothelialization but express molecules that could potentially explain the rare delayed ruptures. Coils promote wound healing and express genes potentially implicated in recurrence of coiled aneurysms.

INTRODUCTION

Endovascular treatment is now considered standard of care for the treatment of most intracranial aneurysms (IA). Numerous endovascular tools exist for the treatment of IA and flow-diverting devices have gained a large interest with good occlusion rates1. However, the biological mechanisms driving IA physiopathology remain poorly understood, including the mechanisms for formation, rupture, growth, healing or device-related complications need of further elucidation. Indeed, endovascular devices used for the treatment of IAs are not simply inert mechanical devices used to seal the aneurysm neck without any interaction with the host, rather, they interact with different biological processes with the aim to definitely heal the aneurysm. Those biological interactions may vary according to the device used or depending on the local biological conditions and sometimes lead to non-occlusion of the aneurysm or to very rare but devastating complications such as delayed rupture24. It is of high importance to understand biological processes after endovascular treatment in order to optimize the devices used for the treatment of IA and try to prevent potential complications.

Previous studies aimed at exploring the mechanisms of aneurysm healing following endovascular treatments but have mostly focused at the tissue, cellular or molecular levels57. Endovascular coiling primarily elicits thrombus formation in the aneurysm cavity and then promotes neointima formation across the neck to seal the aneurysm cavity from the circulation5, 8, but long term occlusion rates are poor with high rates of recanalization due to lack of aneurysms healing9, 10. On the contrary, occlusions rates following flow diverters are high and likely driven by endothelialization of the device from endothelial cells originating from the parent artery6, 11. However, despite high rates of occlusion and good clinical outcomes5, flow-diverter devices have been associated with the occurrence of previously unobserved complications. Indeed, several cases of delayed aneurysm ruptures have been reported with fatal outcomes3, 4. Even if this complication is very rare and occurs in lees than 1% of cases, controversy exists surrounding their mechanisms and it appears important to try to explain it. Several mechanisms have been proposed to explain this complication, such as flow modifications2 or a deleterious impact of the intra-aneurysms thrombus trapped by the flow-diverter3. Gene regulation studies have previously investigated the impact of selected key molecules such as metallopeptidases, fibronectin and collagen, potentially involved in the healing of aneurysms following coil or flow diverter embolization1214. However, these prior studies did not provide a global overview of the biological pathways involved in those different treatment options15. Recently, microarray and RNA-sequencing (RNA-seq) have been used to compare mRNA and miRNA expression either in both humans and animal models in order to better understanding the molecular mechanisms of aneurysm healing16, 17. However, none of these previous studies have compared coiled or flow-diverter treated aneurysms18. We used RNA-seq technology following implantation of coils or flow-diverters in elastase induced saccular aneurysms in rabbits to identify genes and pathways of potential clinical interest and to determine if differential pathways exist for healing of coiled and flow-diverter treated aneurysms.

MATERIALS AND METHODS

Aneurysm Creation, Treatment, and Follow-up

The Institutional Animal Care and Use Committee approved all procedures before initiation of the study. Some of the rabbits employed in this study were originally used as part of another investigations, where we compared the gene expression between untreated aneurysms with contralateral carotid arteries16 and in prior analyses of expression of selected vascular remodeling molecules following coil and flow diverter treatment15. Elastase induced saccular aneurysms were created in 16 New Zealand White rabbits (body weight 3–4 kg). Detailed procedures for aneurysm creation have been previously described in depth19. Aneurysms were permitted to mature for at least 3 weeks after creation. Then aneurysms were either embolized with platinum coils (n=5), or treated with flow diverters (Pipeline Embolic Device, Covidien Inc, California, USA) as previously described20 (n=4) or left untreated (n=6). At 4 weeks following treatment, a follow-up DSA of the aortic arch was performed. The animals were then euthanized using a lethal injection of pentobarbital. Untreated aneurysms were euthanized at 12 weeks following aneurysm creation. The aneurysm samples were harvested and the samples were immediately snap frozen in liquid nitrogen and kept frozen at −70°C until use.

RNA Extraction

RNA was isolated from frozen tissues by using miRNeasy Mini Kit (Qiagen, Calif). The quantity of the RNA was measured by using spectrophotometry, and the integrity of the RNA was confirmed by electrophoretic separation by using the 2100 Bioanalyzer (Agilent Technologies, Calif).

RNA Sequencing

RNA libraries were prepared according to the manufacturer’s instructions for the TruSeq RNA Sample Prep Kit v2 (Illumina, CA). Then the libraries were loaded onto paired end flow cells following Illumina’s standard protocol using the Illumina cBot and cBot Paired end cluster kit version 3 and HCS v2.0.12 data collection software. Base calling were performed using Illumina’s RTA version 1.17.21.3.

Bioinformatics Analysis

The processing of the mRNA and miRNA data was performed using MAP-RSeq (v1.2.1.3)21. MAPRSeq consists of the following steps: alignment, quality control, obtaining genomic features per sample and finally summarizing the data across samples. The pipeline provides detailed quality control data to estimate the distance between paired-end reads, evaluates the sequencing depth for alternate splicing analysis, determines the rate of duplicate reads, and calculates the read depth across genes using the RSeQC (v2.3.2)22 software. Paired-end reads are aligned by TopHat (v2.0.6)23 against the April 2009 oryCun2 genome build using the bowtie124 aligner option. Gene counts were generated using HTSeq (v0.5.3p9)25 software and the gene annotation files were obtained from Ensembl (ftp://ftp.ensembl.org/pub/release75/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.OryCun2.0.75.gtf.gz) and the University of California Santa Cruz (http://hgdownload.soe.ucsc.edu/downloads.html#rabbit). Differential expression comparing a sample’s normal tissue to that same sample’s tissue with an aneurysm was computed using the edgeR algorithm (v2.6.2) across all samples. Human orthologs were assigned using Exolocator26. The pathway analysis leveraged the Ingenuity Pathway Analysis (IPA)27 software to identify pathways enriched with human ortholog targets. IPA identified the involvement of different pathways according to the number of genes of the specific pathway which were differentially expressed in the compared groups. A pathway is considered more involved than an other if a larger amount of genes of this specific pathway are found up or down-regulated according to the pre-specified values.

Quantitative real time PCR analysis

The mRNA expression of selected genes was assessed by quantitative real time PCR. These selected genes were prion protein 2 (PRND), fibroblast growth factor 23 (FGF-23), matrix metalloproteinase (MMP) 1, SRC kinase signaling inhibitor 1 (SRCIN1), death associated protein-like 1 (DAPL1) and hedgehog-interacting protein (HHIP). Briefly, first strand complementary DNAs were synthesized from 500 ng of total RNA using a synthesis system (SuperScript III First-Strand Synthesis System; Invitrogen, USA). Then real time PCR was performed with a cycler (iCycler; Bio-Rad, USA) using SYBR Green PCR kit (Invitrogen). The specific primers were designed from corresponding sequences obtained from GenBank using a Web tool (Primer 3; http://frodo.wi.mit.edu/primer3/).

Statistical Analysis

The t-test statistics and corresponding P values were used as a measure of the mean change in expression between the test and control groups relative to the variability. The primary assessment was comparing each treatment group versus the control group. We additionally had a secondary assessment comparing treatment groups against each other. EdgeR tool was used to test for a normal distribution of the data. The t test based P values were adjusted for multiple comparisons by using the false discovery rate (FDR) multiple correction approach28. Genes were considered differentially expressed in case of a fold change of 2 (log value > 2 were considered up regulated, whereas log value < −2 were considered down regulated), with a FDR ≤ 0.1 and a P value < 0.05.

RESULTS

Coiled versus untreated aneurysms

All aneurysms treatments with coils were successful without any recurrence at follow-up. Using the criteria above for differential expression, 464 out of 9990 (4.6%) genes were identified as being differentially expressed when compared to untreated aneurysms. Of these 464 genes, 58 were down-regulated and 406 were up-regulated (Online table 1). The most up and down regulated molecules are presented in Table 1. Of the 10 most up-regulated, 3 are metalloproteinases: MMP1 (8.4 fold), MMP12 (6.1 fold) and MMP13 (7.2 fold) involved in the breakdown of extracellular matrix and interstitial collagen for tissue remodeling. The most down-regulated protein is HHIP, decreased 3.5 fold compared to untreated aneurysms. The most involved pathways are shown in online table 2. Those pathways are generally related to inflammatory responses, including T and B cells and interleukin-10 involvement and cell-to-cell signaling as well as granulocytes and agranulocytes adhesion and diapedesis. Those pathways involve up-regulation of MMPs such as MMP1, MMP3, MMP12, MMP13 and interleukins.

Table 1.

Top up and down-regulated molecules comparing coiled versus untreated aneurysms, determined by IPA.

Top up-regulated molecules Exp. Value Top down-regulated molecules Exp. Value
MMP1 Matrix metallopeptidase 1 (interstitial collagenase) 8.407 SRCIN1 SRC kinase signaling inhibitor 1 −4.210
MAP3K19 Mitogen-activated protein kinase kinase kinase 19 7.854 DAPL1 Death associated protein-like 1 −3.922
TREML2* Triggering receptor expressed on myeloid cells-like 2 7.583 HHIP Hedgehog interacting protein −3.512
FGF23 Fibroblast growth factor 23 7.423 MPZ Myelin protein zero −3.400
MMP13 Matrix metallopeptidase 13 (collagenase 3) 7.201 MYH7B Myosin, heavy chain 7B, cardiac muscle, beta −3.342
SLAMF7 SLAM family member 7 6.670 PCDHAC2 Protocadherin alpha subfamily C, 2 −3.112
CXCL13* Chemokine (C-X-C motif) ligand 13 6.490 THRSP Thyroid hormone responsive −3.089
XDH Xanthine dehydrogenase 6.298 CYP2D6 Cytochrome P450, family 2, subfamily D, polypeptide 6 −2.991
IBSP Integrin-binding sialoprotein 6.221 USH2A Usher syndrome 2A (autosomal recessive, mild) −2.932
MMP12 Matrix metallopeptidase 12 (macrophage elastase) 6.206 SORCS1 Sortilin-related VPS10 domain containing receptor 1 −2.703

Values are expressed as log fold change.

Flow-diverter treated versus untreated aneurysms

All aneurysms treatments with FD were successful without any delayed rupture at follow-up. Using the criteria above for differential expression, 177 out of 10041 (1.8%) genes were identified as being differentially expressed. Of these 177 genes, 8 were down-regulated and 169 were up-regulated (Online table 3). The most up and down regulated molecules are presented in Table 2. Of the 10 most up-regulated, FGF23 is increased 5.7 fold, keratin 8 (KRT8) increased 6.2 fold, MMP1 increased 4.5 fold, apelin (APLN) increased 4.4 fold and interleukin 6 (IL6) increased 4.4 fold compared to untreated aneurysms. Of the most down-regulated molecules, DAPL1 is decreased by 3.8 fold, SRCIN1 is decreased by 3.3 fold, macrophage receptor with collagenous structure (MARCO) is decreased by 2.4 fold, Fibroblast growth factor binding protein 1 (FGFBP1) is decreased by 2.2 fold. The most involved pathways are shown in online table 4. The most involved pathway is the atherosclerosis signaling pathways with 9 up-regulated genes when compared to non-treated aneurysms. Similarly to coiled aneurysms, agranulocytes adhesion and diapedesis pathway, as well as cell-to-cell signaling pathway are involved with flow-diverters.

Table 2.

Top up and down-regulated molecules comparing flow-diverted versus untreated aneurysms, determined by IPA.

Top up-regulated molecules Exp. Value Top down-regulated molecules Exp. Value
PRND Prion protein 2 (dublet) 8.719 DAPL1 Death associated protein-like 1 −3.752
KRT8 Keratin 8 6.233 SRCIN1 SRC kinase signaling inhibitor 1 −3.295
FGF23 Fibroblast growth factor 23 5.662 FAM150A Family with sequence similarity 150, member A −2.555
SIRPB1 Signal-regulatory protein beta 1 5.463 MARCO Macrophage receptor with collagenous structure −2.396
CXCL8* Chemokine (C-X-C motif) ligand 8 4.781 LECT1 Leukocyte cell derived chemotaxin 1 −2.373
GPR158 G protein-coupled receptor 158 4.747 SCIN Scinderin −2.287
MMP1 Matrix metallopeptidase 1 (interstitial collagenase) 4.467 FGFBP1 Fibroblast growth factor binding protein 1 −2.183
HMGA2 High mobility group AT-hook 2 4.412 MYH7B Myosin, heavy chain 7B, cardiac muscle, beta −2.107
APLN apelin 4.412
IL6 Interleukin 6 (interferon, beta 2) 4.375

Values are expressed as log fold change.

Flow-diverter treated versus coiled aneurysms

Using the criteria above for differential expression, 13 out of 9982 (0.13%) genes were identified as being differentially expressed. Of these 13 genes, 8 were down-regulated and 5 were up-regulated (Table 3). Of the 13 differentially expressed molecules when comparing flow-diverter treated IA to coiled, KRT8 was increased 4.3 fold, and basigin (BSG) was increased 3.8 fold. Protein disulfide isomerase-like (PDILT) was over-expressed in the coiled group compared to the flow-diverter group 4.2 fold and C-type lectin domain family 7, member A (CLEC7A, also called dectin 1) was over-expressed 2.5 fold in the coiled group. Due to the low number of differentially expressed molecules when comparing coiled with flow-diverter treated aneurysms, it was not possible to identify specific pathways differentially involved.

Table 3.

Top up and down-regulated molecules comparing flow-diverted versus coiled aneurysms, determined by IPA.

Top up-regulated molecules Exp. Value Top down-regulated molecules Exp. Value
KRT8 Keratin 8 4.266 PDILT Protein disulfide isomerase-like, testis expressed −4.172
BSG Basigin / EMMPRIN 3.799 LIPA Lipase A, lysosomal acid, cholesterol esterase −3.820
TLDC2 TBC/LysM-associated domain containing 2 3.363 EXPH5 Exophilin 5 −2.872
PRPH Peripherin 2.895 ZNF483 Zinc finger protein 483 −2.667
RMRP RNA component of mitochondrial RNA processing endoribonuclease 2.671 KLHL14 Kelch-like family member 14 −2.470
CLEC7A -type lectin domain family 7, member A −2.451
TCN1 Transcobalamin I (vitamin B12 binding protein, R binder family) −2.432
COL25A1 Collagen, type XXV, alpha 1 −2.285

Values are expressed as log fold change.

Validation of Microarray Data

Verification of differential gene expression in the aneurysm and control artery was done in five selected genes from the top up or down-regulated genes identified by RNA-seq. Those selected genes were PRND, FGF-23, MMP1, SRCIN1, DAPL1 and HHIP. Results obtained by RT-PCR for gene expression levels were varying in the same way and in comparable amplitude than did with RNA-seq. Results of RT-PCR are presented in online table 5.

DISCUSSION

This study found differential expression in a large assortment of genes in tissue from coiled or flow-diverter treated aneurysms compared with untreated aneurysms. The differentially expressed genes are mostly related to the inflammatory response and cellular migration. These findings may provide insight into the biological effects of coils and flow diverters and also highlight pathways to analyze in order to better understand and optimize the outcomes after endovascular treatment for intracranial aneurysms.

Our results showed that relatively few genes were differentially expressed when comparing coils versus flow-diverter treated aneurysms. These findings highlight the fact that, despite two different approaches, the response to the device used for the endovascular treatment of IA does not vary substantially. These findings further demonstrate that the observed gene modifications were mostly driven by the aneurysm itself than by the device and implies that the mechanisms leading to aneurysm occlusion are somewhat similar, whatever the device used. However, some genes where differentially expressed in the flow-diverter treated group compared to the coiled group.

Specifically, we identified that the most up-regulated molecule is keratin 8, which acts as a binding site for plasminogen29. This overexpression of plasminogen receptors could be deleterious for the treated aneurysms. Indeed, association of plasminogen with cellular receptors facilitates its activation in plasmin30, 31. Then, plasmin generated from plasminogen is able to degrade extracellular matrix components directly or indirectly by activating MMPs (MMP-1, 3 and 9)32, 33.

Our study also found that apelin is up-regulated in flow-diverter treated aneurysms compared to coiled aneurysms. This molecule significantly reduces aneurysm formation in the elastase model of AAA by decreasing macrophage burden likely due to an apelin-mediated decrease in proinflammatory cytokine and chemokine activation34, 35. It has also been demonstrated that apelin is present to a limited degree in endothelial cells, with a potent ability to stimulate the proliferation of cultured human umbilical vein endothelial cells36. In our study, apelin was overexpressed in flow-diverter treated aneurysms compared to coiled, which is potentially a key factor for the promotion of endothelial cells, leading to stent endothelialization and aneurysm occlusion37.

These current results also confirm the role of inflammation in responding implanted devices for the treatment of IA. Metalloroteinases are known to be involved in thrombus homeostasis in IA but mainly MMP2 and MMP9 have been described in this pathology3841. Here, we report the important role of other MMP molecules (MMP1, 12 and 13) over-expressed in coiled versus untreated IA. These MMPs have been reported as being implicated in abdominal aortic aneurysms (AAA) formation and progression4252. However their impact has not been extensively descripted in the setting of IA50. We can suspect that this increased level of MMPs in coiled aneurysms is linked with recanalization as MMP-9 levels are associated with aneurysm recanalization and recurrence53. The RNA-seq also found that basigin (also known as extracellular matrix metalloproteinase inducer: EMMPRIN) is up-regulated in flow-diverter treated aneurysms compared to coiled aneurysms. This molecule is known to regulate different MMPs, especially MMP2 and MMP954, 55. The increased level of basigin in flow-diverters could explain the higher level of those MMP in flow-diverter treated aneurysms as previously described15.

Furthermore, the Macrophage Receptor with Collagenous Structure (MARCO) is another differentially expressed gene in our study. This molecule is associated with thrombus-free aneurysms in a study comparing thrombus-free and thrombus-covered wall of AAA56. In our study, we observed a down-regulation of MARCO in the flow-diverter group, suggesting an increased implication of intra-aneurysmal thrombosis compared to untreated aneurysms and the potential role of intra-aneurysmal thrombus for delayed aneurysm rupture associated with flow-diverters3, 57.

Regarding the potential deleterious role of keratin 8 in flow-diverters, the generation of plasmin induces neutrophil aggregation, monocyte chemotaxis and expression of pro-inflammatory molecules58 via multiple signaling pathways including nuclear factor-κB (NF-κB)59. This involvement of the fibrinolytic system has been previously highlighted in AAA pathology60. In AAA, it has been described that plasminogen is present in the mural thrombus61. This mural thrombus, by trapping polymorphonuclear leukocytes and adsorbing plasma components could act as a source of proteases in aneurysms that may play a critical role in enlargement and rupture57. Furthermore, AAA diameter is correlated with the level of plasmin activity in AAA wall61. The overexpression of keratin 8 in flow-diverter treated IA, could explain the deleterious issue in the rare cases of delayed aneurysms ruptures after FDs. This overexpression of keratin 8 associated with large amount of intra-saccular thrombus after flow-diverter placement, supports that intra-aneurysmal thrombosis is a possible cause of delayed aneurysm rupture after flow-diversion treatment3, however the confirmation of this hypothesis would need further dedicated experiments to precise the impact of keratin 8.

Another important function for aneurysm occlusion after endovascular treatment is wound healing, consisting subsequently in thrombus formation, myofibroblast invasion, and extracellular matrix deposition5, 12, 62. CLEC7A (dectin 1) is a molecule promoting wound healing by the enhanced production of collagen matrices with beta-glucans6365. Our results show that dectin 1 is about four times over-expressed in coiled IA when compared to flow-diverter treated IA. This suggests that wound healing is a process which is much more preponderant in coils than in flow-diverter. FGFBP1 is another molecule promoting wound healing66, 67. The present results show that FGFBP1 is decreased in flow diverter treated aneurysms compared to untreated aneurysms, supporting the idea that aneurysm occlusion after flow diverter therapy is not related to wound healing mechanisms but mostly by endothelial cells proliferation originating from the parent artery, as previously demonstrated6. We also identified another molecule of interest, HHIP, which is abundantly expressed in vascular endothelial cells and involved in angiogenesis68. We observed in our study that the expression of HHIP is down-regulated in coiled aneurysms. HHIP down-regulation is involved in the promotion of angiogenesis and could be involved in the neovascularization of the wound during the healing of coiled aneurysms5, 69.

Limitations

Our study has several limitations. We used the rabbit elastase model and acknowledge that animal models are imperfect predictors of the human response. Indeed, the created aneurysms are in the mediastinum, rather than the subarachnoid space and thus subject to different perianeurysmal modulations compared with berry aneurysms. Another limitation in using a model is the high degree of homogeneity among the different aneurysms, which is not the same in unselected human IA. However, this model has been evaluated with RNA-seq and has similar expression patterns to human intracranial aneurysms16. But this aneurysm model is not a model of spontaneous rupture and some biological pathways may differ when considering rupture-prone aneurysms. To explore these mechanisms, it could be interesting to analyze genes expressions in new models for active aneurysms with inflamed aneurysms wall or bio-active thrombus70, 71. Also, time intervals between creation of aneurysm and the time of euthanizing the animals were different between untreated and treated aneurysms which could introduce a difference in the healing process. Considering the differences between the human and the rabbit genomes, the observed findings may not be directly applicable to the clinical system. As with most gene expression studies, we recognize that any results obtained are exploratory in nature and need to be explored further; to that end, we did validate several results with RT–PCR and will continue to explore these results further in other models. Likewise, because of normal variations, there likely are genes for which our threshold levels were not achieved that may have an effect in humans. Just because a gene is not significantly up- or down-regulated, that does not necessarily imply that it is not relevant. Similarly, a gene found up or down-regulated is not necessarily related to the specific question. The aim of this study was to give a general overview of genes modifications after coiling or flow-diverter treatment; not to describe all the gene variations following coil embolization or flow-diverter therapy or to identify and focus on a specific pathways or molecules. This study identifies some new parameters to explore which could be potential key-factors to target to improve endovascular devices. This will require further validation with specific experiments to precisely describe the role of each molecule of interest.

CONCLUSION

RNA-sequencing analysis of rabbit aneurysms showed that despite different approaches, the response to the device used for the endovascular treatment of IA does not vary substantially and that the mechanisms leading to aneurysm occlusion are somewhat similar, whatever the device used. However, it revealed differential regulation of some key pathways, including inflammation and cellular migration that could explain the different biological mechanisms implicated in aneurysms healing either after coiling or flow-diverter treatments and could be key-molecules to explore in order to explain related complications. This study confirms that wound healing is preponderant after coiling compared to flow-diverter treated aneurysms. Also, this study identified in the flow-diverter treated IA an overexpreesion of Keratin 8 and Basigin, implicated in the inflammatory response and in the plasminogen system.

Supplementary Material

Acknowledgments

Funding

This work was supported by research grant NS076491 from the National Institute of Health. Aymeric Rouchaud was supported by a research grants from the French Society of Radiology and Therese Planiol Foundation.

Footnotes

DISCLOSURES: Juan Cebral—RELATED: Grant: NIH,* Comments: Research grant; UNRELATED: Grants/Grants Pending: NIH, Philips, Comments: Research grants. David Kallmes—RELATED: Grant: Covidien/Medtronic,* Comments: Provided devices at no cost; UNRELATED: Board Membership: GE Healthcare (Cost-effectiveness Board)*; Consultancy: Medtronic,* Comments: Planning and implementing clinical trials; Grants/Grants Pending: MicroVention,* Sequent,* Surmodics,* Codman,* eV3/Covidien/Medtronic,* NeuroSigma,* Comments: Preclinical and clinical research; Travel/Accommodations/Meeting Expenses Unrelated to Activities Listed: Medtronic,* Comments: Presentation at FDA panel meeting. Ramanathan Kadirvel—RELATED: Grant: NIH (grant number NS076491).*

*

money paid to institution

References

  • 1.Brinjikji W, Murad MH, Lanzino G, et al. Endovascular treatment of intracranial aneurysms with flow diverters: a meta-analysis. Stroke. 2013;44:442–447. doi: 10.1161/STROKEAHA.112.678151. [DOI] [PubMed] [Google Scholar]
  • 2.Cebral JR, Mut F, Raschi M, et al. Aneurysm rupture following treatment with flow-diverting stents: computational hemodynamics analysis of treatment. AJNR Am J Neuroradiol. 2011;32:27–33. doi: 10.3174/ajnr.A2398. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3.Kulcsar Z, Houdart E, Bonafe A, et al. Intra-aneurysmal thrombosis as a possible cause of delayed aneurysm rupture after flow-diversion treatment. AJNR Am J Neuroradiol. 2011;32:20–25. doi: 10.3174/ajnr.A2370. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Kulcsár ZSI. The ESMINT Retrospective Analysis of Delayed Aneurysm Ruptures after flow diversion (RADAR) study. The eJournal of the European Society of Minimally Invasive Neurological Therapy. 2012 [Google Scholar]
  • 5.Brinjikji W, Kallmes DF, Kadirvel R. Mechanisms of Healing in Coiled Intracranial Aneurysms: A Review of the Literature. AJNR Am J Neuroradiol. 2015;36:1216–1222. doi: 10.3174/ajnr.A4175. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Kadirvel R, Ding YH, Dai D, et al. Cellular mechanisms of aneurysm occlusion after treatment with a flow diverter. Radiology. 2014;270:394–399. doi: 10.1148/radiol.13130796. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Rouchaud A, Journe C, Louedec L, et al. Autologous mesenchymal stem cell endografting in experimental cerebrovascular aneurysms. Neuroradiology. 2013;55:741–749. doi: 10.1007/s00234-013-1167-4. [DOI] [PubMed] [Google Scholar]
  • 8.Kallmes DF, Helm GA, Hudson SB, et al. Histologic evaluation of platinum coil embolization in an aneurysm model in rabbits. Radiology. 1999;213:217–222. doi: 10.1148/radiology.213.1.r99oc16217. [DOI] [PubMed] [Google Scholar]
  • 9.Crobeddu E, Lanzino G, Kallmes DF, et al. Review of 2 decades of aneurysm-recurrence literature, part 1: reducing recurrence after endovascular coiling. AJNR Am J Neuroradiol. 2013;34:266–270. doi: 10.3174/ajnr.A3032. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Raymond J, Guilbert F, Weill A, et al. Long-term angiographic recurrences after selective endovascular treatment of aneurysms with detachable coils. Stroke. 2003;34:1398–1403. doi: 10.1161/01.STR.0000073841.88563.E9. [DOI] [PubMed] [Google Scholar]
  • 11.Li ZF, Fang XG, Yang PF, et al. Endothelial progenitor cells contribute to neointima formation in rabbit elastase-induced aneurysm after flow diverter treatment. CNS Neurosci Ther. 2013;19:352–357. doi: 10.1111/cns.12086. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Kadirvel R, Ding YH, Dai D, et al. Differential gene expression in well-healed and poorly healed experimental aneurysms after coil treatment. Radiology. 2010;257:418–426. doi: 10.1148/radiol.10100362. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Mangrum WI, Farassati F, Kadirvel R, et al. mRNA expression in rabbit experimental aneurysms: a study using gene chip microarrays. AJNR Am J Neuroradiol. 2007;28:864–869. [PMC free article] [PubMed] [Google Scholar]
  • 14.Kadirvel R, Ding YH, Dai D, et al. Gene expression profiling of experimental saccular aneurysms using deoxyribonucleic acid microarrays. AJNR Am J Neuroradiol. 2008;29:1566–1569. doi: 10.3174/ajnr.A1125. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Puffer C, Dai D, Ding YH, et al. Gene expression comparison of flow diversion and coiling in an experimental aneurysm model. J Neurointerv Surg. 2014 doi: 10.1136/neurintsurg-2014-011452. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Holcomb M, Ding YH, Dai D, et al. RNA-Sequencing Analysis of Messenger RNA/MicroRNA in a Rabbit Aneurysm Model Identifies Pathways and Genes of Interest. AJNR Am J Neuroradiol. 2015 doi: 10.3174/ajnr.A4390. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Nakaoka H, Tajima A, Yoneyama T, et al. Gene expression profiling reveals distinct molecular signatures associated with the rupture of intracranial aneurysm. Stroke. 2014;45:2239–2245. doi: 10.1161/STROKEAHA.114.005851. [DOI] [PubMed] [Google Scholar]
  • 18.Roder C, Kasuya H, Harati A, et al. Meta-analysis of microarray gene expression studies on intracranial aneurysms. Neuroscience. 2012;201:105–113. doi: 10.1016/j.neuroscience.2011.10.033. [DOI] [PubMed] [Google Scholar]
  • 19.Altes TA, Cloft HJ, Short JG, et al. 1999 ARRS Executive Council Award. Creation of saccular aneurysms in the rabbit: a model suitable for testing endovascular devices. American Roentgen Ray Society. AJR Am J Roentgenol. 2000;174:349–354. doi: 10.2214/ajr.174.2.1740349. [DOI] [PubMed] [Google Scholar]
  • 20.Kallmes DF, Ding YH, Dai D, et al. A new endoluminal, flow-disrupting device for treatment of saccular aneurysms. Stroke. 2007;38:2346–2352. doi: 10.1161/STROKEAHA.106.479576. [DOI] [PubMed] [Google Scholar]
  • 21.Kalari KR, Nair AA, Bhavsar JD, et al. MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. BMC Bioinformatics. 2014;15:224. doi: 10.1186/1471-2105-15-224. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Wang L, Wang S, Li W. RSeQC: quality control of RNA-seq experiments. Bioinformatics. 2012;28:2184–2185. doi: 10.1093/bioinformatics/bts356. [DOI] [PubMed] [Google Scholar]
  • 23.Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25:1105–1111. doi: 10.1093/bioinformatics/btp120. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Langmead B, Trapnell C, Pop M, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10:R25. doi: 10.1186/gb-2009-10-3-r25. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Anders S, Pyl PT, Huber W. HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics. 2015;31:166–169. doi: 10.1093/bioinformatics/btu638. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Khoo AA, Ogrizek-Tomas M, Bulovic A, et al. ExoLocator--an online view into genetic makeup of vertebrate proteins. Nucleic Acids Res. 2014;42:D879–881. doi: 10.1093/nar/gkt1164. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Kramer A, Green J, Pollard J, Jr, et al. Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics. 2014;30:523–530. doi: 10.1093/bioinformatics/btt703. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Reiner A, Yekutieli D, Benjamini Y. Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics. 2003;19:368–375. doi: 10.1093/bioinformatics/btf877. [DOI] [PubMed] [Google Scholar]
  • 29.Obermajer N, Doljak B, Kos J. Cytokeratin 8 ectoplasmic domain binds urokinase-type plasminogen activator to breast tumor cells and modulates their adhesion, growth and invasiveness. Mol Cancer. 2009;8:88. doi: 10.1186/1476-4598-8-88. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Didiasova M, Wujak L, Wygrecka M, et al. From plasminogen to plasmin: role of plasminogen receptors in human cancer. Int J Mol Sci. 2014;15:21229–21252. doi: 10.3390/ijms151121229. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31.Syrovets T, Lunov O, Simmet T. Plasmin as a proinflammatory cell activator. J Leukoc Biol. 2012;92:509–519. doi: 10.1189/jlb.0212056. [DOI] [PubMed] [Google Scholar]
  • 32.Lijnen HR. Plasmin and matrix metalloproteinases in vascular remodeling. Thromb Haemost. 2001;86:324–333. [PubMed] [Google Scholar]
  • 33.Carmeliet P, Moons L, Lijnen R, et al. Urokinase-generated plasmin activates matrix metalloproteinases during aneurysm formation. Nat Genet. 1997;17:439–444. doi: 10.1038/ng1297-439. [DOI] [PubMed] [Google Scholar]
  • 34.Leeper NJ, Tedesco MM, Kojima Y, et al. Apelin prevents aortic aneurysm formation by inhibiting macrophage inflammation. American journal of physiology Heart and circulatory physiology. 2009;296:H1329–1335. doi: 10.1152/ajpheart.01341.2008. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35.Zhou Y, Wang Y, Qiao S. Apelin: a potential marker of coronary artery stenosis and atherosclerotic plaque stability in ACS patients. International heart journal. 2014;55:204–212. doi: 10.1536/ihj.13-234. [DOI] [PubMed] [Google Scholar]
  • 36.Masri B, Morin N, Cornu M, et al. Apelin (65–77) activates p70 S6 kinase and is mitogenic for umbilical endothelial cells. FASEB J. 2004;18:1909–1911. doi: 10.1096/fj.04-1930fje. [DOI] [PubMed] [Google Scholar]
  • 37.Du X, Kang JP, Wu JH, et al. Elevated high sensitive C-reactive protein and apelin levels after percutaneous coronary intervention and drug-eluting stent implantation. Journal of Zhejiang University Science B. 2010;11:548–552. doi: 10.1631/jzus.B1001004. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38.Tulamo R, Frosen J, Hernesniemi J, et al. Inflammatory changes in the aneurysm wall: a review. J Neurointerv Surg. 2010;2:120–130. doi: 10.1136/jnis.2009.002055. [DOI] [PubMed] [Google Scholar]
  • 39.Frosen J. Smooth muscle cells and the formation, degeneration, and rupture of saccular intracranial aneurysm wall--a review of current pathophysiological knowledge. Transl Stroke Res. 2014;5:347–356. doi: 10.1007/s12975-014-0340-3. [DOI] [PubMed] [Google Scholar]
  • 40.Aoki T, Kataoka H, Morimoto M, et al. Macrophage-derived matrix metalloproteinase-2 and -9 promote the progression of cerebral aneurysms in rats. Stroke. 2007;38:162–169. doi: 10.1161/01.STR.0000252129.18605.c8. [DOI] [PubMed] [Google Scholar]
  • 41.Kadirvel R, Dai D, Ding YH, et al. Endovascular treatment of aneurysms: healing mechanisms in a Swine model are associated with increased expression of matrix metalloproteinases, vascular cell adhesion molecule-1, and vascular endothelial growth factor, and decreased expression of tissue inhibitors of matrix metalloproteinases. AJNR Am J Neuroradiol. 2007;28:849–856. [PMC free article] [PubMed] [Google Scholar]
  • 42.Courtois A, Nusgens BV, Hustinx R, et al. 18F-FDG uptake assessed by PET/CT in abdominal aortic aneurysms is associated with cellular and molecular alterations prefacing wall deterioration and rupture. Journal of nuclear medicine : official publication, Society of Nuclear Medicine. 2013;54:1740–1747. doi: 10.2967/jnumed.112.115873. [DOI] [PubMed] [Google Scholar]
  • 43.Morris DR, Biros E, Cronin O, et al. The association of genetic variants of matrix metalloproteinases with abdominal aortic aneurysm: a systematic review and meta-analysis. Heart. 2014;100:295–302. doi: 10.1136/heartjnl-2013-304129. [DOI] [PubMed] [Google Scholar]
  • 44.Saracini C, Bolli P, Sticchi E, et al. Polymorphisms of genes involved in extracellular matrix remodeling and abdominal aortic aneurysm. Journal of vascular surgery. 2012;55:171–179 e172. doi: 10.1016/j.jvs.2011.07.051. [DOI] [PubMed] [Google Scholar]
  • 45.Wilson WR, Anderton M, Choke EC, et al. Elevated plasma MMP1 and MMP9 are associated with abdominal aortic aneurysm rupture. European journal of vascular and endovascular surgery : the official journal of the European Society for Vascular Surgery. 2008;35:580–584. doi: 10.1016/j.ejvs.2007.12.004. [DOI] [PubMed] [Google Scholar]
  • 46.Chase AJ, Newby AC. Regulation of matrix metalloproteinase (matrixin) genes in blood vessels: a multi-step recruitment model for pathological remodelling. Journal of vascular research. 2003;40:329–343. doi: 10.1159/000072697. [DOI] [PubMed] [Google Scholar]
  • 47.Xiong W, Knispel R, MacTaggart J, et al. Membrane-type 1 matrix metalloproteinase regulates macrophage-dependent elastolytic activity and aneurysm formation in vivo. The Journal of biological chemistry. 2009;284:1765–1771. doi: 10.1074/jbc.M806239200. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48.Dai X, Shen J, Annam NP, et al. SMAD3 deficiency promotes vessel wall remodeling, collagen fiber reorganization and leukocyte infiltration in an inflammatory abdominal aortic aneurysm mouse model. Scientific reports. 2015;5:10180. doi: 10.1038/srep10180. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49.Didangelos A, Yin X, Mandal K, et al. Extracellular matrix composition and remodeling in human abdominal aortic aneurysms: a proteomics approach. Molecular & cellular proteomics : MCP. 2011;10 doi: 10.1074/mcp.M111.008128. M111 008128. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 50.Zhang B, Dhillon S, Geary I, et al. Polymorphisms in matrix metalloproteinase-1, -3, -9, and -12 genes in relation to subarachnoid hemorrhage. Stroke. 2001;32:2198–2202. doi: 10.1161/hs0901.095382. [DOI] [PubMed] [Google Scholar]
  • 51.Curci JA, Liao S, Huffman MD, et al. Expression and localization of macrophage elastase (matrix metalloproteinase-12) in abdominal aortic aneurysms. The Journal of clinical investigation. 1998;102:1900–1910. doi: 10.1172/JCI2182. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 52.Tromp G, Gatalica Z, Skunca M, et al. Elevated expression of matrix metalloproteinase-13 in abdominal aortic aneurysms. Annals of vascular surgery. 2004;18:414–420. doi: 10.1007/s10016-004-0050-5. [DOI] [PubMed] [Google Scholar]
  • 53.Bouzeghrane F, Darsaut T, Salazkin I, et al. Matrix metalloproteinase-9 may play a role in recanalization and recurrence after therapeutic embolization of aneurysms or arteries. J Vasc Interv Radiol. 2007;18:1271–1279. doi: 10.1016/j.jvir.2007.06.034. [DOI] [PubMed] [Google Scholar]
  • 54.Chen XF, Wang JA, Hou J, et al. Extracellular matrix metalloproteinase inducer (EMMPRIN) is present in smooth muscle cells of human aneurysmal aorta and is induced by angiotensin II in vitro. Clin Sci (Lond) 2009;116:819–826. doi: 10.1042/CS20080235. [DOI] [PubMed] [Google Scholar]
  • 55.Lizarbe TR, Tarin C, Gomez M, et al. Nitric oxide induces the progression of abdominal aortic aneurysms through the matrix metalloproteinase inducer EMMPRIN. The American journal of pathology. 2009;175:1421–1430. doi: 10.2353/ajpath.2009.080845. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 56.Kazi M, Zhu C, Roy J, et al. Difference in matrix-degrading protease expression and activity between thrombus-free and thrombus-covered wall of abdominal aortic aneurysm. Arteriosclerosis, thrombosis, and vascular biology. 2005;25:1341–1346. doi: 10.1161/01.ATV.0000166601.49954.21. [DOI] [PubMed] [Google Scholar]
  • 57.Fontaine V, Jacob MP, Houard X, et al. Involvement of the mural thrombus as a site of protease release and activation in human aortic aneurysms. Am J Pathol. 2002;161:1701–1710. doi: 10.1016/S0002-9440(10)64447-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 58.Li Q, Laumonnier Y, Syrovets T, et al. Plasmin triggers cytokine induction in human monocyte-derived macrophages. Arterioscler Thromb Vasc Biol. 2007;27:1383–1389. doi: 10.1161/ATVBAHA.107.142901. [DOI] [PubMed] [Google Scholar]
  • 59.Burysek L, Syrovets T, Simmet T. The serine protease plasmin triggers expression of MCP-1 and CD40 in human primary monocytes via activation of p38 MAPK and janus kinase (JAK)/STAT signaling pathways. J Biol Chem. 2002;277:33509–33517. doi: 10.1074/jbc.M201941200. [DOI] [PubMed] [Google Scholar]
  • 60.Reilly JM. Plasminogen activators in abdominal aortic aneurysmal disease. Ann N Y Acad Sci. 1996;800:151–156. doi: 10.1111/j.1749-6632.1996.tb33306.x. [DOI] [PubMed] [Google Scholar]
  • 61.Coutard M, Touat Z, Houard X, et al. Thrombus versus wall biological activities in experimental aortic aneurysms. J Vasc Res. 2010;47:355–366. doi: 10.1159/000265569. [DOI] [PubMed] [Google Scholar]
  • 62.Killer M, Plenk H, Minnich B, et al. Histological demonstration of healing in experimental aneurysms. Minim Invasive Neurosurg. 2009;52:170–175. doi: 10.1055/s-0029-1237366. [DOI] [PubMed] [Google Scholar]
  • 63.Daley JM, Brancato SK, Thomay AA, et al. The phenotype of murine wound macrophages. J Leukoc Biol. 2010;87:59–67. doi: 10.1189/jlb.0409236. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 64.van den Berg LM, Zijlstra-Willems EM, Richters CD, et al. Dectin-1 activation induces proliferation and migration of human keratinocytes enhancing wound re-epithelialization. Cell Immunol. 2014;289:49–54. doi: 10.1016/j.cellimm.2014.03.007. [DOI] [PubMed] [Google Scholar]
  • 65.Roy S, Dickerson R, Khanna S, et al. Particulate beta-glucan induces TNF-alpha production in wound macrophages via a redox-sensitive NF-kappabeta-dependent pathway. Wound Repair Regen. 2011;19:411–419. doi: 10.1111/j.1524-475X.2011.00688.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 66.Beer HD, Bittner M, Niklaus G, et al. The fibroblast growth factor binding protein is a novel interaction partner of FGF-7, FGF-10 and FGF-22 and regulates FGF activity: implications for epithelial repair. Oncogene. 2005;24:5269–5277. doi: 10.1038/sj.onc.1208560. [DOI] [PubMed] [Google Scholar]
  • 67.Tassi E, McDonnell K, Gibby KA, et al. Impact of fibroblast growth factor-binding protein-1 expression on angiogenesis and wound healing. The American journal of pathology. 2011;179:2220–2232. doi: 10.1016/j.ajpath.2011.07.043. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 68.Olsen CL, Hsu PP, Glienke J, et al. Hedgehog-interacting protein is highly expressed in endothelial cells but down-regulated during angiogenesis and in several human tumors. BMC Cancer. 2004;4:43. doi: 10.1186/1471-2407-4-43. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 69.Wong VW, Crawford JD. Vasculogenic cytokines in wound healing. Biomed Res Int. 2013;2013:190486. doi: 10.1155/2013/190486. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 70.Gounis MJ, van der Bom IM, Wakhloo AK, et al. MR imaging of myeloperoxidase activity in a model of the inflamed aneurysm wall. AJNR Am J Neuroradiol. 2015;36:146–152. doi: 10.3174/ajnr.A4135. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 71.Delbosc S, Alsac JM, Journe C, et al. Porphyromonas gingivalis participates in pathogenesis of human abdominal aortic aneurysm by neutrophil activation. Proof of concept in rats. PLoS One. 2011;6:e18679. doi: 10.1371/journal.pone.0018679. [DOI] [PMC free article] [PubMed] [Google Scholar]

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