TABLE XI.

Results for model-based and MAGeT Brain segmentations using manually generated template library using atlases given as mean (confidence interval)

	3 Template Multi-Atlas		3 Template MAGeT		Multi-Atlas
Structure	ANIMAL	ANTs	ANIMAL	ANTs	ANIMAL	ANTs
Kappa
Striatum	0.885 (0.880–0.889)	0.888 (0.882–0.891)	0.891* (0.887–0.896)	0.894* (0.890–0.898)	0.892 (0.887–0.895)	0.900# (0.896–0.904)
Globus pallidus	0.790 (0.772–0.808)	0.797 (0.781–0.812)	0.815* (0.800–0.827)	0.805 (0.789–0.820)	0.811 (0.797–0.824)	0.819 (0.804–0.834)
Thalamus	0.883 (0.874–0.891)	0.887 (0.878–0.895)	0.895 (0.883–0.901)	0.895 (0.884–0.902)	0.891 (0.882–0.900)	0.902 (0.893–0.911)
Jaccard
Striatum	0.784 (0.774–0.793)	0.795 (0.790–0.803)	0.810* (0.797–0.812)	0.806* (0.799–0.813)	0.803 (0.797–0.811)	0.820# (0.814–0.826)
Globus pallidus	0.645 (0.622–0.670)	0.662 (0.643–0.685)	0.687* (0.667–0.707)	0.676 (0.654–0.697)	0.684 (0.664–0.703)	0.696 (0.675–0.717)
Thalamus	0.794 (0.781–0.811)	0.794 (0.784–0.811)	0.806 (0.792–0.822)	0.807 (0.792–0.821)	0.804 (0.790–0.819)	0.821 (0.809–0.837)

Results are given for multi-atlas and MAGeT Brain segmentation with 3 templates (3 Template Multi-Atlas and 3 Template MAGeT, respectively) and full multi-atlas segmentation.

^*Represents significance levels of P < 0.05 for 3 Template MAGeT Brain as compared to its 3 Template Multi-Atlas counterpart.

^#Represents significance levels of P < 0.05 for Multi-Atlas segmentation compared to 3 Template Multi-Atlas counterpart.

Only segmentations using the same nonlinear registration algorithms were compared to one another (e.g., only the model-based segmentation using ANIMAL was compared to the MAGeT Brain segmentation using ANIMAL).