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. Author manuscript; available in PMC: 2016 Sep 30.
Published in final edited form as: Pharmacogenomics. 2015 Sep 30;16(15):1713–1721. doi: 10.2217/pgs.15.108

Table 1.

Overview of possible discrepancies between gold-standard results and the results of other constrained views of assays.

Gold-standard
haplotype result (based
on FULL view) 		Assay-specific haplotype result
Call No-call
Call If haplotype called by assay is also called by gold
standard: ‘nonproblematic call’. If haplotype called by assay
is not also called by gold standard: ‘problematic call’		 No-call due to lack of
coverage of assay
No-call ‘Problematic call’ because sample does not match any
defined haplotype, but platform calls haplotype because it
interrogates only some genetic loci		 No-call due to lack of
coverage of both assay and
haplotype definition table