Table 1.
Origin of the haemagglutinin sequences of influenza A(H9N2) isolates used for the phylogenetic analysis
| Segment ID | Country | Collection date | Isolate name | Submitting laboratory | Authors |
|---|---|---|---|---|---|
| EPI573379 | China | 2014-Jul-04 | A/chicken/Shanghai/015/2014 | Shanghai Animal Disease Control Center | Ge, F., Mao, X. and Liu, J. |
| EPI339694 | China | 2011-Jul | A/chicken/Anhui/G29/2011 | China Animal Health & Epidemiology Center | Chen, J., Liu, S., Jiang, W.M., Hou, G.Y., Li, J.P. and Chen, J.M. |
| EPI315926 | China | 2011-Feb | A/chicken/Anhui/ZTL/2011 | South China Agricultural University | Liu, J. |
| EPI296439 | China | 2009-Jan | A/chicken/Baoshan/111/2009 | Yunnan Tropical and Subtropical Animal Virus Diseases Laboratory | Song, J., Ye, C. and Tian, J. |
| EPI572786 | China | 2013-Mar-09 | A/chicken/Beijing/0309/2013 | China Agricultural University | Pu, J., Wang, J., Zhang, G., Yin, Y., Lv, N., Zhu, B., et al. |
| EPI470965 | China | 1994 | A/chicken/Beijing/1/1994 | St. Jude Children’s Research Hospital | Baranovich, T., Marathe, B.M., Bridges, O., Burnham, A., Carey, D., Cline, T.D., et al. |
| EPI597003 | China | 2014-Feb-21 | A/chicken/Dongguan/1424/2014 | The University of Hong Kong | Lam, T.T., Zhou, B., Wang, J., Chai, Y., Shen, Y., Chen, X., et al |
| EPI315960 | China | 2011-Jan | A/chicken/Fujian/SL6/2011 | South China Agricultural University | Liu, J. |
| EPI81684 | China | 2000 | A/chicken/Guangdong/4/00 | Harbin Veterinary Research Institute | Li, C., Yu, K., Tian, G., Yu, D., Liu, L., Jing, B., et al. |
| EPI315932 | China | 2011-Feb | A/chicken/Guangdong/FZH/2011 | South China Agricultural University | Liu, J. |
| EPI621363 | China | 2015-Jan | A/chicken/Guangdong/KPL01/2015 | South China Agricultural University | Su, X. and Xie, Q. |
| EPI239451 | China | 1994 | A/Chicken/Guangdong/SS/94 | Yangzhou University | Shi, H.Y., Liu, X.F., Chen, S.J., Sun, L. and Xin, C.H.A. |
| EPI81694 | China | 1999 | A/chicken/Guangxi/10/99 | Harbin Veterinary Research Institute | Li, C., Yu, K., Tian, G., Yu, D., Liu, L., Jing, B., et al. |
| EPI122456 | China | 2005 | A/chicken/Guangxi/55/2005 | Guangxi General Veterinary Prevention and Quarantine Services | Liu, Q., Xiong, Y., Qin, L., Liu, K., Zhu, W., Qin, F.Y., et al. |
| EPI122438 | China | 2000 | A/chicken/Guangxi/6/2000 | Guangxi General Veterinary Prevention and Quarantine Services | Liu, Q., Xiong, Y., Qin, L., Liu, K., Zhu, W., Qin, F.Y., et al. |
| EPI538912 | China | 2013-Nov-23 | A/chicken/Guangxi/LS/2013 | Guangxi Veterinary Research Institute | Li, H.M., Guo, J.G., Zhou, L.B., Chen, L., Long, J.M. and Pan, J. |
| EPI81698 | China | 2000 | A/chicken/Hebei/31/00 | Harbin Veterinary Research Institute | Li, C., Yu, K., Tian, G., Yu, D., Liu, L., Jing, B., et al. |
| EPI140897 | China | 2008-Aug-02 | A/chicken/Hebei/B1/2001 | Shandong Academy of Agricultural Science, Animal Husbandry and Veterinary Institute | Huang, Y., Hu, B., Wen, X., Cao, S., Gavrilov, B.K., Du, Q., et al. |
| EPI140900 | China | 2006 | A/chicken/Hebei/L1/2006 | Shandong Animal Husbandry and Veterinary Institute | Huang, Y., Hu, B., Wen, X., Cao, S., Xu, D., Zhang, X., et al. |
| EPI254331 | China | 2003 | A/chicken/Heibei/8/2003 | College of Life Science and Technology, Southwest University of Nationalities | Yue, H., Tang, C. and Li, M.Y. |
| EPI326397 | China | 1998 | A/chicken/Henan/A3/1998 | Henan Agriculture University | Wang, Z., Zhao, J., Cai, L., Zheng, L. and Wang, C. |
| EPI238802 | China | 1998 | A/chicken/Henan/nd/1998 | Beijing Genomics Institute, Chinese Academy of Sciences | Liao, X., Zhang, X., Wang, J., Yu, J. and Liu, J. |
| EPI470859 | Hong Kong SAR | 1997 | A/chicken/Hong_Kong/G9/1997 | St. Jude Children’s Research Hospital | Baranovich, T., Marathe, B.M., Bridges, O., Burnham, A., Carey, D., Cline, T.D., et al. |
| EPI470915 | Hong Kong SAR | 2011 | A/chicken/Hong_Kong/NT10/2011 | St. Jude Children’s Research Hospital | Baranovich, T., Marathe, B.M., Bridges, O., Burnham, A., Carey, D., Cline, T.D., et al. |
| EPI337045 | China | 1999-Feb-21 | A/chicken/Hubei/01/1999 | Huazhong Agricultural University | Zhang, Z., Hu, S., Li, Z., Liu, M., Li, S., Xiao, Y. et al. |
| EPI623618 | China | 2014-May-28 | A/chicken/Hubei/2014 | Wuhan Institute of Virology, Chinese Academy of Sciences | Wang, N., Liu, X.-J., Wang, B., Zhang, S.-H. and Ge, X.-Y. |
| EPI593620 | China | 2014-Jun-29 | A/chicken/Jiangxi/19426/2014 | Centre of Influenza Research, School of Public Health, The University of Hong Kong | Lam, T.T., Zhou, B., Wang, J., Chai, Y., Shen, Y., Chen, X., et al |
| EPI559917 | China | 2012-Nov-10 | A/chicken/Jilin/GYH1/2012 | College of Veterinary Medicine, Jilin University | Cong, Y., Zhu, L. and Ran, W. |
| EPI301458 | Jordan | 2004 | A/chicken/Jordan/1436-1451/2004 | Istituto Zooprofilattico Sperimentale Delle Venezie | Fusaro, A., Monne, I., Salviato, A., Valastro, V., Schivo, A., Amarin, N.M., et al. |
| EPI470818 | South Korea | 1996 | A/chicken/Korea/25232-96006/1996 | St. Jude Children’s Research Hospital | Baranovich, T., Marathe, B.M., Bridges, O., Burnham, A., Carey, D., Cline, T.D., et al. |
| EPI5901 | South Korea | 1996 | A/Chicken/Korea/38349-p96323/96 | St. Jude Children’s Research Hospital | Guan, Y., Shortridge, K.F., Senne, D., Krauss, S. and Webster, R.G. |
| EPI304611 | South Korea | 2007-Nov-24 | A/chicken/Korea/GH2/2007 | Biological Sciences, Inje University | Koo, Y. |
| EPI339649 | China | 2011-Jul | A/chicken/Ningxia/182/2011 | Laboratory of Animal Epidemiological Surveillance, China Animal Health & Epidemiology Center | Chen, J., Liu, S., Jiang, W.M., Hou, G.Y., Li, J.P. and Chen, J.M. |
| EPI487143 | China | 2001-Jul-18 | A/chicken/Shandong/241/2001 | Avian Virus Disease Laboratory, LanZhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences | In, Z., Xu, C., Liu, B., Ji, Y., Fu, Y., Guo, J. and et al. |
| AF508570a | China | 1996 | A/Chicken/Shandong/6/96 | Microbiology, The University of Hong Kong | Li, J.W., Yu, K.Z., Brown, I., Shortridge, K.F., Pieris, J.S.M. and Guan, Y. |
| EPI470818 | China | 2009-May | A/chicken/Shandong/H/2009 | CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences | Lu, L., Bi, Y., Li, J., Sun, L. and Liu, W. |
| EPI272334 | China | 2008-Dec-01 | A/chicken/Shandong/LY/2008 | Department of Veterinary Prevention Medicine, College of Veterinary Medicine, China Agricultural University | Pu, J., Zhang, G. and Liu, J. |
| EPI239002 | China | 1998 | A/Chicken/Shanghai/F/98 | Animal Infectious Disease Laboratory, School of Veterinary Medicine, Yangzhou University | Lu, J.H., Liu, X.F., Shao, W.X., Liu, Y.L., Wei, D.P. and Liu, H.Q. |
| EPI470907 | China | 2005 | A/chicken/Shantou/22116/2005 | St. Jude Children’s Research Hospital | Baranovich, T., Marathe, B.M., Bridges, O., Burnham, A., Carey, D., Cline, T.D., et al. |
| AF508572a | China | 1997 | A/chicken/Shenzhen/9/97 | Microbiology, The University of Hong Kong | Li, J.W., Yu, K.Z., Brown, I., Shortridge, K.F., Pieris, J.S.M. and Guan, Y. |
| EPI573766 | China | 2014-Mar | A/chicken/Yangzhou/752/2014 | Yang Zhou University | Yang, X. |
| EPI241325 | China | 2000-Sep-04 | A/chicken/Zhejiang/HE6/2009 | College of Animal Science, South China Agricultural University | Chen, C., Ji, J., Bai, S., Zuo, K. and Xie, Q. |
| EPI221855 | China | 2007 | A/chicken/Zhejiang/HJ/2007 | Avian Disease, Animal Husbandry and Veterinary Medicine of Fujian Academy of Agricultural Sciences | Wan, C. and Huang, Y. |
| EPI610285 | China | 2010-Oct-10 | A/Chinese francolin/Guangxi/B7/2010 | Guangxi Key Laboratory of Animal Vaccines and Diagnostics, Guangxi Veterinary Research Institute | Peng, Y., Xie, Z., Liu, J., Pang, Y., Xie, Z., Xie, L., et al. |
| EPI441826 | Viet Nam | 2006-Dec | A/Chinese Hwamei/Vietnam/38/2006 | Kyoto Sangyo University, Faculty of Life Sciences | Takakuwa, H. |
| CY005632a | Hong Kong SAR | 1979-Oct-09 | A/duck/HK/784/1979 | St. Jude Children’s Research Hospital | Obenauer, J.C., Denson, J., Mehta, P.K., Su, X., Mukatira, S., Finkelstein, D.B., et al. |
| EPI10783 | Hong Kong SAR | 2003 | A/Duck/Hong_Kong/289/78 | Microbiology, The University of Hong Kong, | Li, K.S., Xu, K.M., Peiris, J.S., Poon, L.L., Yu, K.Z., Yuen, K.Y., et al. |
| EPI16562 | Hong Kong SAR | 1979 | A/duck/Hong_Kong/552/79 | Microbiology, The University of Hong Kong | Li, K.S., Xu, K.M., Peiris, J.S., Poon, L.L., Yu, K.Z., Yuen, K.Y., et al. |
| EPI5885 | Hong Kong SAR | 1997 | A/Duck/Hong_Kong/Y280/97 | St. Jude Children’s Research Hospital | Guan, Y., Shortridge, K.F., Krauss, S. and Webster, R.G. |
| EPI5887 | Hong Kong SAR | 1997 | A/duck/Hong_Kong/Y439/1997 | St. Jude Children’s Research Hospital | Baranovich, T., Marathe, B.M., Bridges, O., Burnham, A., Carey, D., Cline, T.D., et al. |
| EPI497495 | China | 2013-Mar-13 | A/environment/Chongqing/00516/2013 | WHO Chinese National Influenza Center | Gao, R., Li, X., Zhang, Y., Zou, S., Zhao, X., Li, X., et al. |
| EPI457842 | China | A/environment/Jiangxi/02895/2012 | Harbin Veterinary Research Institute | Li, C., Yu, K., Tian, G., Yu, D., Liu, L., Jing, B., and et al. | |
| EPI492254 | China | 2013-Mar-25 | A/environment/Zhejiang/14/2013 | Zhejiang Provincial Center for Disease Control and Prevention | Feng, Y., Mao, H., Xu, C., Jiang, J., Chen, Y., Yan, J., et al. |
| EPI232381 | USA | 2008 | A/ferret/Maryland/P10-UMD/2008 | University of Maryland | Sorrell, E.M., Wan, H., Araya, Y., Song, H. and Perez, D.R. |
| AJ404627a | Hong Kong SAR | 1999 | A/guinea_fowl/Hong_Kong/WF10/99 | St. Jude Children’s Research Hospital | Perez, D.R., Lim, W., Seiler, J.P., Yi, G., Peiris, M., Shortridge, K.F. et al. |
| EPI24300 | Hong Kong SAR | 2003 | A/guineafowl/HongKong/NT184/03 | St. Jude Children’s Research Hospital | Choi, Y.K., Ozaki, H., Webby, R.J., Webster, R.G., Peiris, J.S., Poon, L., et al. |
| AJ404627a | Hong Kong SAR | 1999 | A/Hong_Kong/1074/99 | Virology, National Institute for Medical Research, London | Lin, Y.P., Shaw, M., Gregory, V., Cameron, K., Lim, W., Klimov, A., et al. |
| EPI498037 | Hong Kong SAR | 2013-Dec-28 | A/Hong_Kong/308/2014 | Public Health Laboratory Services Branch, Centre for Health Protection | Mak, G.C., Cheng, P.K.C., Lo, J.Y.C. |
| CY055140a | Hong Kong SAR | 2009-Oct-29 | A/Hong_Kong/33982/2009 | Public Health Lab Centre, Centre For Health Protection, Department of Health, Hong Kong | Cheng, P.K.C. and Lim, W.L. |
| EPI439653 | China | 2011-Feb | A/mallard/Jiangxi/42/2011 | Institute of Molecular Ecology and Evolution, East China Normal University | Zhu, G., Wang, R., Xuan, F., Daszak, P., Anthony, S.J., Zhang, S., Zhang, L. and He, G. |
| EPI5889 | Hong Kong SAR | 1997 | A/Quail/Hong_Kong/G1/97 | St. Jude Children’s Research Hospital | Guan, Y., Shortridge, K.F., Krauss, S. and Webster, R.G. |
| EPI573570 | China | 2013-Apr | A/quail/Jiangsu/WX3/2013 | School of Veterinary Medicine, Yangzhou University | Zhu, Y., Yang, D., Ren, Q., Yang, Y., Liu, X., Xu, X., et al. |
| EPI113630 | China | 2005 | A/quail/Shantou/19506/2005 | Department of Microbiology, The University of Hong Kong, | Xu, K.M., Li, K.S., Smith, G.J.D., Li, J.W., Tai, H., Zhang, J.X., et al. |
| EPI113492 | China | 2000 | A/quail/Shantou/782/2000 | Department of Microbiology, The University of Hong Kong, | Xu, K.M., Li, K.S., Smith, G.J.D., Li, J.W., Tai, H., Zhang, J.X., et al. |
| EPI597411 | China | 2014-Feb-21 | A/silkie_chicken/Dongguan/968/2014 | Centre of Influenza Research, School of Public Health, The University of Hong Kong | Lam, T.T., Zhou, B., Wang, J., Chai, Y., Shen, Y., Chen, X., et al. |
| EPI5913 | United States | 1966 | A/turkey/California/189/66 | St. Jude Children’s Research Hospital | Guan, Y., Shortridge, K.F., Krauss, S. and Webster, R.G. |
| EPI407924 | United States | 1966 | A/turkey/Wisconsin/1/1966 | St. Jude Children’s Research Hospital | Wentworth, D.E., Dugan, V., Halpin, R., Lin, X., Wester, E., Bera, J., et al. |
a
Sequence downloaded from Influenza Research Database funded by the National Institute of Allergy and Infectious Diseases (NIAID) [36].