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. Author manuscript; available in PMC: 2018 Apr 15.
Published in final edited form as: Virus Res. 2017 Jan 16;234:135–152. doi: 10.1016/j.virusres.2017.01.006

Table 1.

List of High-resolution Structures of Cystoviral RdRPs (P2)

PDB Ligands/Variants Resolution Species Reference
1HI0 5′-dTdTdTdCdC-3′, GTP, Mg2+, Mn2+ (Initiation Complex) 3.0 Å Φ6 A
1HHS Mn2+ 2.0 Å Φ6 A
1HHT 5′-dTdTdTdCdC-3′, Mn2+ 2.9 Å Φ6 A
1HI8 Mg2+ 2.5 Å Φ6 A
1HI1 ATP 3.0 Å Φ6 A
1UVI 5′-UUUUCC-3′, Mn2+ 2.15 Å Φ6 B
1UVJ 5′-UUCC-3′, Mn2+ 1.9 Å Φ6 B
1UVK 5′-GG-3′, Mn2+, Mg2+, pyrophosphate (product state) 2.45 Å Φ6 B
1UVL 5′-UUUCC-3′, Mn2+ 2.0 Å Φ6 B
1UVM 5′-UUUCC-3′, Mn2+ (alternate conformation) 2.0 Å Φ6 B
1UVN 5′-UUCC-3′, GTP, Mn2+, Ca2+ 3.0 Å Φ6 B
1WAC 629-QYKW-632/629-SGT-631 mutant 3.0 Å Φ6 C
2JL9 E491Q mutant 3.2 Å Φ6 D
2JLF E491Q mutant, 5′-UUUUCC-3′, Mn2+ 3.2 Å Φ6 D
2JLG E491Q mutant, 5′-dTdTdTdTdCdC-3′, GTP, Mn2+ 2.8 Å Φ6 D
4A8F 5′-dAdGdCdG-3′, Mg2+, ATP 3.3 Å Φ6 E
4A8K 5′-dAdAdTdC-3′, Mg2+, GTP 3.5 Å Φ6 E
4A8M 5′-dAdAdTdC-3′, Mg2+, ATP, GTP 2.92 Å Φ6 E
4A8O E634Q mutant, Mn2+ 2.67 Å Φ6 E
4A8Q E634Q mutant, 5′-dTdTdCdGdCdG-3′, Mg2+, ATP 3.06 Å Φ6 E
4A8S E634Q mutant, 5′-dTdTdTdTdCdGdCdGdTdAdGdCdG-3′, Mg2+, ATP 2.9 Å Φ6 E
4A8W E634Q mutant, 5′-dTdTdCdGdCdGdTdAdAdGdCdG-3′, Mg2+, ATP 3.04 Å Φ6 E
4A8Y E634Q mutant, 5′-dTdTdTdTdCdGdCdGdTdAdAdGdCdG-3′, Mg2+, ATP 3.41 Å Φ6 E
4B02 Nicked at R607, Mn2+ 3.3 Å Φ6 F
4IEG Mg2+ (Form A) 2.1 Å Φ12 G
4GZK Mg2+ (Form B) 1.69 Å Φ12 G