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. Author manuscript; available in PMC: 2018 Feb 5.
Published in final edited form as: J Vis Exp. 2017 Aug 29;(126):10.3791/56067. doi: 10.3791/56067

Table 2. Universal influenza virus primers.

Primer pairs for the amplification of the HA segments of influenza A27 and B28 viruses and their respective thermocycler conditions.

Forward Primer (5' to 3') Reverse Primer (5' to 3') Thermocylcer
conditions
IAV TATTCGTCTCAGGGAGCAAAAGCAGGGG ATATCGTCTCGTATTAGTAGAAACAAGGGTGTTTT 42 °C for 60 min, 94 °C for 2 min/5 cycles of 94 °C for 20 s, 50 °C for 30 s and 68 °C for 3 min 30 s, followed by 40 cycles of 94 °C for 20 s, 58 °C for 30 s, and 68 °C for 3 min 30 s with a final extension time at 68 °C for 10 min
IBV GGGGGGAGCAGAAGCAGAGC CCGGGTTATTAGTAGTAACAAGAGC 45 °C for 60 min, 55 °C for 30 min, 94 °C for 2 min/5 cycles of 94 °C for 20 s, 40 °C for 30 s and 68 °C for 3 min 30 s, followed by 40 cycles of 94 °C for 20 s, 58 °C for 30 s, and 68 °C for 3 min 30 s with a final extension time at 68 °C for 10 min