Figure 4.

Time-scaled Bayesian phylogeny (maximum clade credibility tree) of 160 whole genome sequences of raccoon rabies virus (RRV) from Vermont and neighbouring regions with host association estimated using discrete trait analysis in BEAST based on the host species from which each isolate was sampled. Branches are coloured according to host species (raccoon, skunk or other), unless the posterior probability of the association for none of the host species was >0.9, in which case branches are shown in grey. Dark grey diamonds indicate nodes with >0.9 posterior probability support. The timescale is indicated by the bar at the base of the plot.