Skip to main content
Biophysical Journal logoLink to Biophysical Journal
. 1980 Oct;32(1):347–360. doi: 10.1016/S0006-3495(80)84961-7

Patterns in the quinary structures of proteins. Plasticity and inequivalence of individual molecules in helical arrays of sickle cell hemoglobin and tubulin.

S J Edelstein
PMCID: PMC1327314  PMID: 7248453

Abstract

The four recognized levels of organization of protein structure (primary through quaternary) are extended to add the designation quinary structure for the interactions within helical arrays, such as found for sickle cell hemoglobin fibers or tubulin units in microtubules. For sickle cell hemoglobin the main quinary structure is a 14-filament fiber, with a number of other minor forms also encountered. Degenerate forms of the 14-filament fibers can be characterized that lack specific pairs of filaments; evidence is presented which suggests an overall organization of the 14 filaments in pairs, with particular pairs aligned in an antiparallel orientation. For tubulin, a range of quinary structures can be detected depending on the number of protofilaments and whether adjacent protofilaments composed of alternating alpha- and beta-subunits are aligned with contacts between like or unlike subunits and with parallel or antiparallel polarity. Thus, in contrast to quarternary structure, which generally involves a fixed number of subunits, the quinary structures of proteins can exhibit marked plasticity and inequivalence in the juxtaposition of constituent molecules.

Full text

PDF
347

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Amos L. A., Baker T. S. The three-dimensional structure of tubulin protofilaments. Nature. 1979 Jun 14;279(5714):607–612. doi: 10.1038/279607a0. [DOI] [PubMed] [Google Scholar]
  2. Amos L., Klug A. Arrangement of subunits in flagellar microtubules. J Cell Sci. 1974 May;14(3):523–549. doi: 10.1242/jcs.14.3.523. [DOI] [PubMed] [Google Scholar]
  3. Benesch R. E., Benesch R., Edalji R., Kwong S. Intermolecular effects in the polymerization of hemoglobin S. Biochem Biophys Res Commun. 1978 Apr 28;81(4):1307–1312. doi: 10.1016/0006-291x(78)91278-0. [DOI] [PubMed] [Google Scholar]
  4. Benesch R. E., Kwong S., Benesch R., Edalji R. Location and bond type of intermolecular contacts in the polymerisation of haemoglobin S. Nature. 1977 Oct 27;269(5631):772–775. doi: 10.1038/269772a0. [DOI] [PubMed] [Google Scholar]
  5. Benesch R. E., Kwong S., Edalji R., Benesch R. alpha Chain mutations with opposite effects on the gelation of hemoglobin S. J Biol Chem. 1979 Sep 10;254(17):8169–8172. [PubMed] [Google Scholar]
  6. Bookchin R. M., Balazs T., Nagel R. L., Tellez I. Polymerisation of haemoglobin SA hybrid tetramers. Nature. 1977 Oct 6;269(5628):526–527. doi: 10.1038/269526a0. [DOI] [PubMed] [Google Scholar]
  7. Bookchin R. M., Nagel R. L. Ligand-induced conformational dependence of hemoglobin in sickling interactios. J Mol Biol. 1971 Sep 14;60(2):263–270. doi: 10.1016/0022-2836(71)90292-0. [DOI] [PubMed] [Google Scholar]
  8. CASPAR D. L., KLUG A. Physical principles in the construction of regular viruses. Cold Spring Harb Symp Quant Biol. 1962;27:1–24. doi: 10.1101/sqb.1962.027.001.005. [DOI] [PubMed] [Google Scholar]
  9. Caspar D. L., Holmes K. C. Structure of dahlemense strain of tobacco mosaic virus: a periodically deformed helix. J Mol Biol. 1969 Nov 28;46(1):99–133. doi: 10.1016/0022-2836(69)90060-6. [DOI] [PubMed] [Google Scholar]
  10. Crepeau R. H., Dykes G., Garrell R., Edelstein S. J. Diameter of haemoglobin S fibres in sickled cells. Nature. 1978 Aug 10;274(5671):616–617. doi: 10.1038/274616a0. [DOI] [PubMed] [Google Scholar]
  11. Crepeau R. H., McEwen B., Edelstein S. J. Differences in alpha and beta polypeptide chains of tubulin resolved by electron microscopy with image reconstruction. Proc Natl Acad Sci U S A. 1978 Oct;75(10):5006–5010. doi: 10.1073/pnas.75.10.5006. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Dykes G. W., Crepeau R. H., Edelstein S. J. Three-dimensional reconstruction of the 14-filament fibers of hemoglobin S. J Mol Biol. 1979 Jun 5;130(4):451–472. doi: 10.1016/0022-2836(79)90434-0. [DOI] [PubMed] [Google Scholar]
  13. Dykes G., Crepeau R. H., Edelstein S. J. Three-dimensional reconstruction of the fibres of sickle cell haemoglobin. Nature. 1978 Apr 6;272(5653):506–510. doi: 10.1038/272506a0. [DOI] [PubMed] [Google Scholar]
  14. Erickson H. P. Microtubule surface lattice and subunit structure and observations on reassembly. J Cell Biol. 1974 Jan;60(1):153–167. doi: 10.1083/jcb.60.1.153. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Frey T. G., Eisenberg D., Eiserling F. A. Glutamine synthetase forms three- and seven-stranded helical cables. Proc Natl Acad Sci U S A. 1975 Sep;72(9):3402–3406. doi: 10.1073/pnas.72.9.3402. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Garrell R. L., Crepeau R. H., Edelstein S. J. Cross-sectional views of hemoglobin S fibers by electron microscopy and computer modeling. Proc Natl Acad Sci U S A. 1979 Mar;76(3):1140–1144. doi: 10.1073/pnas.76.3.1140. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Goldberg M. A., Husson M. A., Bunn H. F. Participation of hemoglobins A and F in polymerization of sickle hemoglobin. J Biol Chem. 1977 May 25;252(10):3414–3421. [PubMed] [Google Scholar]
  18. Hofrichter J., Hendricker D. G., Eaton W. A. Structure of hemoglobin S fibers: optical determination of the molecular orientation in sickled erythrocytes. Proc Natl Acad Sci U S A. 1973 Dec;70(12):3604–3608. doi: 10.1073/pnas.70.12.3604. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Josephs R., Borisy G. Self-assembly of glutamic dehydrogenase into ordered superstructures: multichain tubes formed by association of single molecules. J Mol Biol. 1972 Mar 14;65(1):127–155. doi: 10.1016/0022-2836(72)90496-2. [DOI] [PubMed] [Google Scholar]
  20. Kim H., Binder L. I., Rosenbaum J. L. The periodic association of MAP2 with brain microtubules in vitro. J Cell Biol. 1979 Feb;80(2):266–276. doi: 10.1083/jcb.80.2.266. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Larsson H., Wallin M., Edström A. Induction of a sheet polymer of tubulin by Zn2+. Exp Cell Res. 1976 Jun;100(1):104–110. doi: 10.1016/0014-4827(76)90332-3. [DOI] [PubMed] [Google Scholar]
  22. Magdoff-Fairchild B., Chiu C. C. X-ray diffraction studies of fibers and crystals of deoxygenated sickle cell hemoglobin. Proc Natl Acad Sci U S A. 1979 Jan;76(1):223–226. doi: 10.1073/pnas.76.1.223. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Mandelkow E. M., Mandelkow E. Junctions between microtubule walls. J Mol Biol. 1979 Mar 25;129(1):135–148. doi: 10.1016/0022-2836(79)90064-0. [DOI] [PubMed] [Google Scholar]
  24. Moore P. B., Huxley H. E., DeRosier D. J. Three-dimensional reconstruction of F-actin, thin filaments and decorated thin filaments. J Mol Biol. 1970 Jun 14;50(2):279–295. doi: 10.1016/0022-2836(70)90192-0. [DOI] [PubMed] [Google Scholar]
  25. Pierson G. B., Burton P. R., Himes R. H. Alterations in number of protofilaments in microtubules assembled in vitro. J Cell Biol. 1978 Jan;76(1):223–228. doi: 10.1083/jcb.76.1.223. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Stubbs G., Warren S., Holmes K. Structure of RNA and RNA binding site in tobacco mosaic virus from 4-A map calculated from X-ray fibre diagrams. Nature. 1977 May 19;267(5608):216–221. doi: 10.1038/267216a0. [DOI] [PubMed] [Google Scholar]
  27. Tamm L. K., Crepeau R. H., Edelstein S. J. Three-dimensional reconstruction of tubulin in zinc-induced sheets. J Mol Biol. 1979 Jun 5;130(4):473–492. doi: 10.1016/0022-2836(79)90435-2. [DOI] [PubMed] [Google Scholar]
  28. WATSON J. D. The structure of tobacco mosaic virus. I. X-ray evidence of a helical arrangement of sub-units around the longitudinal axis. Biochim Biophys Acta. 1954 Jan;13(1):10–19. doi: 10.1016/0006-3002(54)90265-6. [DOI] [PubMed] [Google Scholar]
  29. Wishner B. C., Ward K. B., Lattman E. E., Love W. E. Crystal structure of sickle-cell deoxyhemoglobin at 5 A resolution. J Mol Biol. 1975 Oct 15;98(1):179–194. doi: 10.1016/s0022-2836(75)80108-2. [DOI] [PubMed] [Google Scholar]

Articles from Biophysical Journal are provided here courtesy of The Biophysical Society

RESOURCES