Abstract
Patients with non-small-cell lung cancer (NSCLC) have a low survival rate. Long non-coding RNA (LncRNA) LANCL1 antisense RNA 1 (LANCL1-AS1) was indicated to be downregulated in NSCLC; however, its detailed function in NSCLC is unanswered. Real-time quantitative polymerase chain reaction revealed the downregulation of LANCL1-AS1 in NSCLC cell lines and subcellular fractionation assay showed that LANCL1-AS1 was mainly located in the cytoplasm of NSCLC cells. Cell counting kit-8, Transwell, and tube formation assays displayed that overexpression of LANCL1-AS1 suppressed NSCLC cell proliferation, migration, invasiveness, and angiogenesis in vitro. Animal experiments validated the tumor-suppressive role of LANCL1-AS1 in tumor-bearing mice. Mechanistically, LANCL1-AS1 upregulated glia maturation factor gamma (GMFG) expression by competitively binding to miR-3680-3p. GMFG knockdown reversed LANCL1-AS1 overexpression-mediated inhibitory impact on NSCLC malignant behaviors. Collectively, LANCL1-AS1 upregulation inhibits the progression of NSCLC by modulating the miR-3680-3p/GMFG axis.
Keywords: non-small-cell lung cancer, LANCL1-AS1, miR-3680-3p, GMFG
1. Introduction
Lung cancer (LC) is the second most prevalent malignancy and the major cause of cancer-related deaths [1]. It is estimated in 2022 that LC accounts for 21% of all cancer-related deaths in men and women in the United States [2]. Emerging evidence has indicated that smoking is the main predisposing factor of LC [3]. Small-cell lung cancer (SCLC) and non-small-cell lung cancer (NSCLC) are two major types of LC, and NSCLC mainly incudes lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), accounting for more than 80% of all LC cases [4]. Despite the declines in the incidence and mortality of LC owing to therapeutic advances and cessation, the 5-year relative survival rate of LC patients is 21%, while that of patients with metastatic disease is only 6% [5]. Hence, finding a more effective biomarker for the diagnosis and therapy of LC is urgent.
Long non-coding RNAs (lncRNAs) are RNA segments consisting of over 200 nucleotides which have no potential to encode proteins but have critical functions in various cellular processes by interacting with downstream molecules [6]. Plentiful studies have verified the involvement of lncRNAs in the tumorigenesis, pathogenesis, and angiogenesis of cancers, including NSCLC [7,8]. For example, LINC01599 is considered as an oncogene in LUAD by promoting autophagy [1]. LINC01296 knockdown inhibits the progression of NSCLC via the miR-143-3p/ATG2B [9]. Furthermore, the regulatory functions of lncRNAs are determined differently by their subcellular location. Numerous studies demonstrated that in the cytoplasm, lncRNAs work as competing endogenous RNAs (ceRNAs) to regulate downstream RNA expression [10]. LANCL1 antisense RNA 1 (LANCL1-AS1) is a novel lncRNA which was reported to be downregulated in NSCLC [11]. Additionally, LANCL1-AS1 was indicated to be an autophagy-related RNA in LUAD [1]. Bioinformatics analysis elucidated the downregulation of LANCL1-AS1 in lung tumors compared with adjacent normal tissues, indicating that LANCL1-AS1 might be a tumor suppressor of LC. In addition, lncLocator (http://www.csbio.sjtu.edu.cn/bioinf/lncLocator/) predicted that LANCL1-AS1 is largely distributed in the cytoplasm. Nevertheless, the detailed function of LANCL1-AS1 in NSCLC is unanswered.
This study aimed to probe the role as well as the regulatory mechanism of LANCL1-AS1 in NSCLC. We hypothesized that LANCL1-AS1 might act as a ceRNA to affect the pathogenesis of NSCLC by modulating downstream molecule expression. Our findings might help to develop a new idea for the diagnosis and therapy of NSCLC.
2. Materials and methods
2.1. Cell culture and transfection
Human normal bronchial epithelial cell line (HBE) and NSCLC cell lines (A549, H1299, and H460) were obtained from the Cell Bank of Chinese Academy of Sciences (Shanghai, China) and incubated in RPMI-1640 medium (Gibco, Waltham, MA, USA) containing 10% fetal bovine serum (FBS; Invitrogen, Carlsbad, CA, USA), 100 U/mL penicillin, and 100 mg/mL streptomycin (Gibco) at 37°C with 5% CO2 in a humidified incubator. For cell transfection, pcDNA3.1/LANCL1-AS1 and empty pcDNA3.1 vector were synthesized by GenePharma (Shanghai, China) for overexpression assays. For the downregulation of miR-3680-3p and glia maturation factor gamma (GMFG), miR-3680-3p inhibitor or the negative control (NC inhibitor) and short hairpin RNAs targeting GMFG (sh-GMFG#1/2) or sh-NC were also obtained from RiboBio (Guangzhou, China). The above vectors were transfected into A549 and H460 cells, respectively using Lipofectamine 2000 (Invitrogen). Cells transfected for 48 h were used for subsequent analysis.
2.2. Real-time quantitative polymerase chain reaction (RT-qPCR)
Total RNA was isolated from NSCLC cells or tumor tissues of mice using TRIzol reagent (Invitrogen). The cDNA was synthesized by reverse transcription of 1 μg RNA samples using SuperScript II (Vazyme, Nanjing, China). RT-qPCR was implemented with SYBR Premix Ex Taq II (Takara, Dalian, China) on a 7500 Real-Time PCR System (Applied Biosystems, Carlsbad, CA, USA). Quantification of LANCL1-AS1, mRNAs, and miRNAs was conducted with the 2−ΔΔCt method, normalized to GAPDH and U6, respectively. Primer sequences are listed in Table 1.
Table 1.
Gene | Sequence (5′→3′) |
---|---|
LANCL1-AS1 forward | TGGATCTTCAGCAGCCACCT |
LANCL1-AS1 reverse | TCCAGGCCTGATAGTGTAGCT |
miR-6748-3p forward | ACACTCCAGCTGGGTCCTGTCCCTGTCTC |
miR-6748-3p reverse | TGGTGTCGTGGAGTCG |
miR-3680-3p forward | ACACTCCAGCTGGGTTTTGCATGACCCTGGG |
miR-3680-3p reverse | TGGTGTCGTGGAGTCG |
miR-214-5p forward | ACACTCCAGCTGGGTGCCTGTCTACACTTG |
miR-214-5p reverse | TGGTGTCGTGGAGTCG |
miR-4732-5p forward | ACACTCCAGCTGGGTGTAGAGCAGGGAGCAG |
miR-4732-5p reverse | TGGTGTCGTGGAGTCG |
KCNMB2 forward | GCACCGGATCGCTGTCATTA |
KCNMB2 reverse | TGGCAAAAAGACCTCCGGTA |
TFRC forward | GGTTATGTGGCGTATAGTAAG |
TFRC reverse | CTGAGTGTGATTGAAGGAAG |
GMFG forward | AAAGAAGAGGCCTGTGGACAG |
GMFG reverse | TGGTTGTTCAGGTCCTAGGG |
GAPDH forward | TATGATGATATCAAGAGGGTAGT |
GAPDH reverse | TGTATCCAAACTCATTGTCATAC |
U6 forward | GTGCGTGTCGTGGAGTCG |
U6 reverse | AACGCTTCACGAATTTGCGT |
2.3. Subcellular fractionation assay
Nuclear/Cytosol Fractionation Kit (Biovision, Shenzhen, China) was used for nuclear and cytoplasmic fraction extraction from A549 and H460 cells. LANCL1-AS1 were isolated from the two fractions and quantified with RT-qPCR. GAPDH and U6 were used as endogenous controls for cytoplasm and nucleus, respectively.
2.4. Cell counting kit-8 (CCK-8) assay
NSCLC cells were placed into 96-well plates (1 × 103 cells/well). At 24, 48, and 72 h, CCK-8 solution (10 μL, Dojindo, Kumamoto, Japan) was added, and the cells were cultured for further 2 h at 37°C. Afterwards, the absorbance at 450 nm was assessed with a microplate reader (Thermo Scientific, Waltham, MA, USA). For cell sensitivity assessment, NSCLC cells were treated with IC50 of gefitinib (a tyrosine kinase inhibitor, TKI drug; MedChemExpress, Shanghai, China) for 24 h, followed by adding CCK-8 solution.
2.5. Transwell assay
Transwell assays were implemented for measuring cell migratory or invasive capabilities. NSCLC cells (2 × 104) were added to the upper chamber of the Transwell chamber (8 μm pore size; Corning, Lowell, MA, USA). The lower or upper chamber was added with complete medium or serum-free medium, respectively. After 48 h of incubation, the non-migratory cells in the upper chamber were swabbed and the migratory cells were subjected to 0.1% crystal violet staining. The invasion assay was similar except that the upper chamber was precoated with Matrigel (BD Biosciences, San Jose, CA, USA). Stained cells were imaged under a microscope (Nikon, Tokyo, Japan).
2.6. Tube formation assay
Human umbilical vein endothelial cell line (HUVEC) was obtained from American Type Culture Collection (ATCC, Manassas, VA, USA) and incubated in Endothelial Cell Growth Medium BulletKit (EGM, Lonza, Switzerland) at 37°C with 5% CO2 in a humidified atmosphere. HUVECs (2 × 104) in 200 μL conditional medium from A549 and H460 cells were inoculated into a 24-well plate which was precoated with Matrigel (Corning) followed by incubation with 5% CO2 at 37°C for 6 h. Tube structures were photographed under a bright-field microscope (Nikon). The mesh and length of the completed tubes were measured to quantify tube formation using Image View 3.7 (Jingtong, China).
2.7. Western blotting
Proteins were isolated from cells using RIPA lysis buffer (Thermo Scientific) and quantified with a BCA assay kit (Bio‐Rad, Hercules, CA, USA). Equal amounts of protein samples (20 μg) were dissolved by 10% SDS-PAGE (Bio-Rad) and blotted onto polyvinylidene fluoride (PVDF) membranes (GE Healthcare, Beijing, China). Membranes were blocked with 5% defatted milk and incubated at 4°C overnight with primary antibodies against fibroblast growth factor 2 (FGF2, ab208687), vascular endothelial growth factor (VEGF, ab46154), angiopoietin 1 (Ang1, ab183701), β-actin (ab115777) (all from Abcam, Cambridge, MA, USA) and GMFG (13625-1-AP; Proteintech, Chicago, IL, USA), followed by incubation with the secondary antibody (ab7090, Abcam) at room temperature for 2 h. The blots were visualized with the ECL kit (Vazyme, Nanjing, China) and quantified with ImageJ software (GE Healthcare).
2.8. Luciferase reporter assay
Putative binding site between LANCL1-AS1 and miR-3680-3p or miR-3680-3p and GMFG was predicted by DIANA (http://carolina.imis.athena-innovation.gr/diana_tools/web/) and TargetScan (http://www.targetscan.org/vert_71/), respectively. Putative binding site was mutated by Phusion Site-Directed Mutagenesis Kits (Thermo Scientific). Wild type (Wt) or mutant (Mut) miR-3680-3p or GMFG was synthesized and subcloned into pmirGLO vectors (Promega, Madison, WI, USA) to construct miR-3680-3p-Wt/Mut and GMFG-Wt/Mut. Then, miR-3680-Wt/Mut and GMFG-Wt/Mut were co-transfected with pcDNA3.1/LANCL1-AS1 (or empty pcDNA3.1) and miR-3680-3p inhibitor, respectively, into A549 and H460 cells using Lipofectamine 2000 (Invitrogen). Forty-eight hours later, the luciferase activity was measured with a dual luciferase® reporter assay system (Promega).
2.9. In vivo xenograft experiments
BALB/c nude mice (male, 5–6 weeks) were obtained from Vital River (Beijing, China) and randomly divided into two groups (n = 5 per group). Recombinant lentivirus carrying LANCL1-AS1 (Lv-LANCL1-AS1) and empty control vector (Lv-con) were synthesized by GenePharma. Mice were injected subcutaneously with H460 cells (2 × 105) expressing Lv-LANCL1-AS1 or Lv-con. Tumor volume was monitored every 3 days and computed by the formula: volume = ½(length × width2). On 18th day, the mice were sacrificed under anesthesia and tumor weight was measured. All animal experiments implemented were approved by the Ethics Committee of Gansu Provincial Hospital.
2.10. Statistical analysis
Data are expressed as the mean value ± standard deviation (SD). Statistical analysis was conducted using SPSS 21.0 (IBM Corp., Armonk, NY, USA). Student’s t-test was utilized for two group comparison, while analysis of variance (ANOVA) was utilized for multiple group comparison followed by Tukey’s post hoc analysis. p < 0.05 was regarded to be statistically significant.
3. Results
3.1. LANCL1-AS1 is downregulated in NSCLC
LANCL1-AS1 expression was examined with GEPIA (http://gepia.cancer-pku.cn/) which reveals LANCL1-AS1 downregulation in LUAD (Figure 1a). Kaplan–Meier Plotter (https://kmplot.com/analysis/) indicates that LANCL1-AS1 downregulation is associated with the poor prognosis of patients with LUAD (Figure 1b). Consistent with the above results, RT-qPCR disclosed a decreased level of LANCL1-AS1 in NSCLC cell lines (A549, H1299, and H460) in comparison to the normal cell line (HBE) (Figure 1c). In accord with the prediction of lncLocator in Figure 1d, the results of subcellular fractionation demonstrated that LANCL1-AS1 was largely located in the cytoplasm of NSCLC cells (Figure 1e). These results showed that a low level of LANCL1-AS1 is related to a poor prognosis of NSCLC.
3.2. Overexpression of LANCL1-AS1 restrains cell migration, invasiveness, and angiogenesis of NSCLC
To reveal the role of LANCL1-AS1 in NSCLC, A549 and H460 cells were stably administrated with pcDNA3.1 or pcDNA3.1/LANCL1-AS1. LANCL1-AS1 level was significantly elevated in LANCL1-AS1-overexpressed cells (Figure 2a). Then, we tested whether LANCL1-AS1 affected NSCLC cell sensitivity to the TKI drug gefitinib. Notably, under gefitinib treatment, NSCLC cells in the control group exhibited higher survival rate that those in LANCL1-AS1-overexpressed group, indicating that LANCL1-AS1 promoted NSCLC cell sensitivity to gefitinib (Figure 2b). CCK-8 assay revealed that upregulation of LANCL1-AS1 restrained NSCLC cell proliferation (Figure 2c). As displayed by Transwell assays, the migratory and invasive capabilities of NSCLC cells were suppressed after overexpressing LANCL1-AS1 (Figure 2d and e). Tube formation assay was conducted to evaluate LANCL1-AS1 impact on angiogenesis of HUVECs. The results displayed marked suppression of mesh formation using condition medium from A549 or H460 cells with LANCL1-AS1 overexpression (Figure 2f). Furthermore, expression levels of angiogenesis-related proteins (VEGF, Ang1, and FGF2) were markedly lessened in LANCL1-AS1-overexpressed A549 and H460 cells (Figure 2g). Collectively, LANCL1-AS1 restrains the migration, invasiveness, and angiogenesis of NSCLC cells.
3.3. LANCL1-AS1 binds to miR-3680-3p
DIANA website was used for screening downstream miRNAs that can interact with LANCL1-AS1. With the screening condition of score˃0.97, four miRNAs were singled out (Figure 3a). As displayed by RT-qPCR, only miR-3680-3p was significantly downregulated in LANCL1-AS1-overexpressed A549 and H460 cells (Figure 3b). Additionally, miR-3680-3p exhibited a high level in NSCLC cell lines in comparison to the normal cells (Figure 3c). DIANA predicts putative binding site between LANCL1-AS1 and miR-3680-3p (Figure 3d). Moreover, overexpression of LANCL1-AS1 was shown to decrease the luciferase activity of miR-3680-3p-Wt rather than miR-3680-3p-Mut in A549 and H460 cells (Figure 3e), verifying the binding relation between LANCL1-AS1 and miR-3680-3p. Additionally, high expression of miR-3680-3p is closely associated with the adverse prognosis of LUAD patients, as shown by ENCORI (https://starbase.sysu.edu.cn/index.php) website (Figure 3f).
3.4. GMFG is a target of miR-3680-3p
To further reveal the regulatory mechanism of LANCL1-AS1 in NSCLC, TargetScan was used for prediction of the downstream gene of miR-3680-3p. Three candidate mRNAs were screened out with the condition of cumulative weighted context++ score >0.7 (Figure 4a). RT-qPCR revealed the downregulation of miR-3680-3p in A549 and H460 cells treated with miR-3680-3p inhibitor (Figure 4b). Additionally, only GMFG was upregulated in miR-3680-3p-depleted A549 and H460 cells (Figure 4c). Western blotting disclosed that depletion of miR-3680-3p increased the protein level of GMFG in A549 and H460 cells (Figure 4d and e). Then, we overexpressed miR-3680-3p in NSCLC cells using miR-3680-3p mimics (Figure 4e). As shown in Figure 4f, upregulation of LANCL1-AS1 elevated GMFG protein expression in NSCLC cells, while overexpression of miR-3680-3p reversed the effect of LANCL1-AS1 upregulation. TargetScan predicts the existence of miR-3680-3p complementary site on GMFG 3'UTR and luciferase reporter assay further elucidated the binding relation between miR-3680-3p and GMFG (Figure 4g and h). GEPIA database shows the downregulation of GMFG in LUAD tissues compared with the normal samples (Figure 4i). In comparison to that in the normal cells, GMFG expression in NSCLC cells was markedly decreased (Figure 4j). Moreover, Kaplan–Meier Plotter exhibits a strong correlation between GMFG low expression and poor prognoses of LUAD patients (Figure 4k). Hence, GMFG is targeted by miR-3680-3p, and its expression is closely related to patient prognoses.
3.5. GMFG silencing rescues LANCL1-AS1 overexpression-mediated inhibitory effect on NSCLC cellular activities
Rescue experiments were conducted to further identify the LANCL1-AS1/miR-3680-3p/GMFG axis-mediated effect on the progression of NSCLC. The transfection efficiency of sh-GMFG#1/2 was detected by RT-qPCR (Figure 5a). As revealed by CCK-8 assay, LANCL1-AS1 overexpression-induced suppression on cell viability was partially reversed by GMFG depletion (Figure 5b). Similarly, downregulating GMFG rescued the suppression in NSCLC cell migration and invasiveness which was caused by LANCL1-AS1 upregulation (Figure 5c and d). Moreover, tube formation assay and western blotting displayed that LANCL1-AS1 overexpression-induced inhibitory impact on angiogenesis of HUVECs was significantly attenuated by GMFG knockdown (Figure 5e and f). Collectively, LANCL1-AS1 inhibits NSCLC progression via the miR-3680-3p/GMFG axis.
3.6. Overexpression of LANCL1-AS1 inhibits tumorigenesis of NSCLC in vivo
To further elucidate LANCL1-AS1 effect on NSCLC, in vivo experiments were carried out. Results displayed that the tumors in LANC1-AS1-overexpressed group grew much more slowly and smaller than those in the control group (Figure 6a–c). Notably, overexpression of LANCL1-AS1 markedly inhibited the expression of angiogenesis-associated proteins in tumors (Figure 6d). These indicated that LANCL1-AS1 exerts an inhibitory effect on tumorigenesis of NSCLC. Additionally, we detected the expression levels of LANCL1-AS1, miR-3680-3p, and GMFG in the tumors of each group. As depicted by the results, LANCL1-AS1 displayed a significantly higher level in Lv-LANCL1-AS1-treated group than that in the control group, confirming the successful overexpression of LNACL1-AS1 in the tumor xenograft mouse model (Figure 6e). Moreover, miR-3680-3p was downregulated and GMFG was markedly upregulated in LANCL1-AS1-overexpressed group (Figure 6f and g). These data indicated that LANCL1-AS1 upregulated GMFG expression by interacting with miR-3680-3p in vivo.
4. Discussion
In the present study, we found that lncRNA LANCL1-AS1 acted as a tumor suppressor in NSCLC by regulating the miR-3680-3p/GMFG axis. Our data showed that overexpression of LANCL1-AS1 inhibited NSCLC cell proliferation, migration, invasion as well as angiogenesis. This suppressive effect on the tumorigenesis of NSCLC was also verified in tumor-bearing mouse models.
Despite the progress made in the diagnoses and treatments, the incidence of NSCLC is still high, with the overall 5-year survival rate lower than 17% [12]. Emerging evidence has illustrated the prominent effects of lncRNAs involved in regulation of cancers, including NSCLC. Multiple lncRNAs are considered as a prognostic biomarker and therapeutic target in NSCLC. For example, RP11-909N17.2 facilitates the cellular processes of NSCLC and predicts an adverse prognosis of patients [13]. PCAT29 inhibits NSCLC progression via the miR-494/PTEN axis and NSCLC patients with a higher level of PCAT29 have a better prognosis [14]. These suggest that lncRNAs can be a tumor suppressor gene or an oncogene. Here we probed the function of LANCL1-AS1 in NSCLC. LANCL1-AS1 is a novel gene that has been indicated to be downregulated in NSCLC; however, to our knowledge, the detailed functions of LANCL1-AS1 have not been studied yet. Currently, LANCL1-AS1 was shown to be downregulated in NSCLC cell lines and bioinformatics analysis revealed that its downregulation is associated with the adverse survival of LUAD patients, indicating the tumor suppressor role of LANCL1-AS1 in NSCLC. Moreover, gain-of-function assays demonstrated that LANCL1-AS1 overexpression restrained the proliferation, motion, and angiogenesis of NSCLC cells in vitro. Importantly, in vivo experiments displayed that upregulated LANC1-AS1 restrained tumorigenesis and angiogenesis in mice. These results elucidated that LANCL1-AS1 suppresses NSCLC progression.
Numerous studies have elucidated that in the cytoplasm, lncRNAs function as a ceRNA to competitively absorb microRNAs (miRNAs) and subsequently regulate messenger RNA (mRNA) expression [15]. For example, in prostate cancer, LINC01679 suppresses tumor progression by regulating miR-3150a-3p/SLC17A9 axis [16]. Additionally, in thyroid cancer, MIAT contributes to tumor progression by absorbing miR-150-5p and modulate EZH2 [17]. Bioinformatics analysis and our assays confirmed that LANCL1-AS1 was largely distributed in the cytoplasm of NSCLC cells, indicating the potential of LANCL1-AS1 as a ceRNA in NSCLC. With the use of bioinformatic tools and a series of experiments, we finally identified miR-3680-3p that could bind with LANCL1-AS1 in NSCLC cells. miR-3680-3p was shown to be sponged by circ-PRKCI to regulate AKT3 expression in esophageal squamous cell carcinoma [18]. Presently, it was shown that miR-3680-3p was upregulated in NSCLC cells and its upregulation correlates with the adverse survival of LUAD patients.
It is recognized that miRNAs can bind to mRNA 3'UTRs by base-pairing, consequently leading to either mRNA degradation or translation suppression [19]. To better understand the mechanism of LANCL1-AS1, we screened the downstream gene of miR-3680-3p. Eventually, GMFG was singled out which displayed downregulated expression in NSCLC and strongly associated with the prognosis of LUAD patients. GMFG has been indicated to play a part in several cancers. For example, a high level of GMFG is related to adverse prognosis and facilitates the progression of epithelial ovarian cancer [20]. Moreover, GMFG exerts an antitumor role in breast cancer and is considered as a promising biomarker for the diagnosis and prognosis [21]. Intriguingly, GMFG was indicated to be downregulated in LUAD [22]. In this study, GMFG silencing was shown to reverse LANCL-AS1 overexpression-mediated inhibitory impact on NSCLC cell malignant behaviors, indicating the antitumor effect of the LANCL1-AS1/miR-3680-3p/GMFG axis in NSCLC.
In conclusion, we probed the role of LANCL1-AS1 in NSCLC. LANCL1-AS1 suppresses the migration, invasiveness, and angiogenesis of NSCLC cells and inhibits tumorigenesis in vivo. Mechanistically, LANCL1-AS1 exerts its antitumor effect by functioning as a ceRNA via the miR-3680-3p/GMFG axis. The findings might develop a novel idea for the therapy of NSCLC.
Acknowledgement
Not applicable.
Footnotes
Funding information: None
Conflict of interest: The authors have no conflict of interest to declare.
Data availability statement: The datasets used or analyzed during the current study are available from the corresponding author on reasonable request.
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