Antibodies
|
Anti-DYKDDDDK tag antibody (mouse monoclonal, clone 1E6) |
FujiFilm Wako Pure Chemicals |
Cat# 012–22384; RRID: AB_10659717 |
Goat anti-mouse IgG secondary antibody, conjugated with Alexa Fluor 488 |
Thermo Fisher Scientific |
Cat# A32723; RRID: AB_2633275 |
Goat anti-mouse IgG secondary antibody, conjugated with Alexa Fluor 647 |
Thermo Fisher Scientific |
Cat# A21235; RRID: AB_2535804 |
Anti-β-Arrestin1 antibody (rabbit monoclonal, clone D8O3J) |
Cell Signaling Technology |
Cat# 12697; RRID: AB_2797996 |
Anti-β-Arrestin2 antibody (rabbit monoclonal, clone C16D9) |
Cell Signaling Technology |
Cat# 3857; RRID: AB_2258681 |
anti-α-tubulin antibody (mouse monoclonal, clone DM1A) |
Santa Cruz Biotechnologies |
Cat# sc-32293; RRID: AB_628412 |
Anti-Rabbit IgG, conjugated with horseradish peroxidase |
GE Healthcare |
Cat# NA9340; RRID: AB_772191 |
Anti-Mouse IgG, conjugated with horseradish peroxidase |
GE Healthcare |
Cat# NA9310; RRID: AB_772193 |
Bacterial and virus strains
|
SCS1 Supercompetent Cells |
Agilent Technologies |
Cat# 200231 |
E. coli NiCo21(DE3) |
NEB |
Cat# C2529H |
E. coli Rosetta (DE3) |
Millipore Sigma |
Cat# 70954–3 |
Biological samples |
|
|
Biological samples
|
Fetal bovine serum |
Thermo Fisher Scientific |
Cat# 10270–106 |
Goat serum |
Nippon Bio-test Laboratories |
Cat# 0208–01 |
Chemicals, peptides, and recombinant proteins
|
Polyethylenimine (PEI) Max (MW 40,000) |
Polysciences |
Cat# 24765–1 |
Opti-MEM |
Thermo Fisher Scientific |
Cat# 31985–070 |
2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid (HEPES) |
Sigma-Aldrich |
Cat# H3375 |
Ethylenediaminetetraacetic acid (EDTA) solution |
Thermo Fisher Scientific |
Cat# 15575–020 |
Trypsin |
Thermo Fisher Scientific |
Cat# 27250–018 |
Bovine serum albumin |
SERVA Electrophoresis |
Cat# 11945 |
Coelenterazine |
Carbosynth |
Cat# EC14031 |
Angiotensin II |
Peptide Institute |
Cat# 4001-v |
Bradykinin |
Peptide Institute |
Cat# 4002-v |
(D-Ala2,N-Me-Phe4,glycinol5)-Enkephalin (DAMGO) |
Bachem AG |
Cat# 4007829 |
Dopamine |
FUJIFILM Wako Pure Chemical |
Cat# 040–15433 |
Dynorphin A |
Peptide Institute |
Cat# 4080-v |
Endothelin-1 |
Peptide Institute |
Cat# 4198-s |
Isoproterenol |
Tokyo Chemical Industry |
Cat# I0260 |
Isoproterenol |
Sigma-Aldrich |
Cat# I6504 |
Methionine-Enkephalin |
Peptide Institute |
Cat# 4042-v |
Neurotensin |
Peptide Institute |
Cat# 4029 |
Norepinephrine |
Tokyo Chemical Industry |
Cat# A0906 |
Oxytocin |
Peptide Institute |
Cat# 4084-v |
PAR2 peptide |
Peptide Institute |
Cat# PAR-3664-PI |
Parathyroid Hormone (PTH) |
Peptide Institute |
Cat# 4068-s |
Serotonin |
FUJIFILM Wako Pure Chemical |
Cat# 321–42341 |
Sphingosine 1-phosphate |
Cayman Chemical |
Cat# 62570 |
Substance P |
Peptide Institute |
Cat# 4014-v |
Thyrotropin-releasing hormone (TRH) |
Peptide Institute |
Cat# 4011 |
[Arg8]-vasopressin (AVP) |
Peptide Institute |
Cat# 4085-v |
DMEM |
Nissui |
Cat# 05919 |
Penicillin G |
Sigma-Aldrich |
Cat# P3032 |
Streptomycin |
Thermo Fisher Scientific |
Cat# 11860–038 |
ImmunoStar Zeta |
FUJIFILM Wako Pure Chemical |
Cat# 291–72401 |
3-isobutyl-1-methylxanthine (IBMX) |
Sigma-Aldrich |
Cat# I5879 |
Forskolin (Fsk) |
Sigma-Aldrich |
Cat# F6886 |
V2Rpp (ARGRpTPPpSLGPQDEpSCpTpTApSpSpSLAKDTSS) |
Tufts University Core Facility |
N/A |
Monobromobimane (mBBr) |
Thermo Fisher Scientific |
Cat# M1378 |
IANBD Amide (N,N’-Dimethyl-N-(Iodoacetyl)-N’-(7-Nitrobenz-2-Oxa-1,3-Diazol-4-yl)Ethylenediamine) |
Thermo Fisher Scientific |
Cat# D2004 |
L-Cysteine |
Sigma-Aldrich |
Cat# 30089 |
5,5-dithio-bis-(2-nitrobenzoic acid) (DTNB) |
Thermo Fisher Scientific |
Cat# 22582 |
BODIPY-TMR PI(4,5)P2 |
Echelon Biosciences |
Cat # C-45M6 |
FLAG peptide (DYKDDDDK) |
Stanford Pan Facility |
N/A |
AlexaFluor 488 C5 maleimide |
Thermo Fisher Scientific |
Cat# A10254 |
ATTO647N C2 maleimide |
ATTO TEC |
Cat# AD647N-41 |
Lauryl maltose neopentyl glycol (LMNG) |
Anatrace |
Cat# NG310 |
Cholesteryl Hemisuccinate (CHS) |
Steraloids |
Cat# C6823 |
Benzamidine hydrochloride hydrate |
Sigma-Aldrich |
Cat# B6506 |
Leupeptin |
Sigma-Aldrich |
Cat# 50-568-49 |
Tris(2-carboxyethyl)phosphine hydrochloride (TCEP) solution |
Sigma-Aldrich |
Cat# 646547 |
ESF921 culture medium |
Expression Systems |
Cat# 96–001 |
Ethylenediaminetetraacetic acid (EDTA) |
Sigma-Aldrich |
Cat# E5134 |
2-Mercaptoethanol (BME) |
Sigma-Aldrich |
Cat# M6250 |
HBS-P+ Buffer 10x |
Cytiva |
Cat# BR100671 |
08:0 PI(4,5)P2
|
Avanti Polar Lipids |
Cat# 850185 |
08:0 PI(3,4)P2
|
Avanti Polar Lipids |
Cat# 850183 |
08:0 PI(3,5)P2
|
Avanti Polar Lipids |
Cat# 850184 |
08:0 PI(3,4,5)P3
|
Avanti Polar Lipids |
Cat# 850186 |
08:0 PI(3)P |
Avanti Polar Lipids |
Cat# 850187 |
08:0 PI(4)P |
Avanti Polar Lipids |
Cat# 850182 |
08:0 PG |
Avanti Polar Lipids |
Cat# 840433 |
Adenosine triphosphate (ATP) |
Sigma-Aldrich |
Cat# A7699 |
Isopropyl β-D-1-thiogalactopyranoside (IPTG) |
Sigma-Aldrich |
Cat# I6758 |
Neurotensin fragment 8–13 acetate salt |
Sigma-Aldrich |
Cat# N5266 |
Series S Sensor Chip SA |
Cytiva |
Cat# BR100531 |
Imidazole |
Sigma-Aldrich |
Cat# I2399 |
Ampicilin |
Sigma-Aldrich |
Cat# A9393 |
Sodium cholate |
Sigma-Aldrich |
Cat# C6445 |
HRV3C protease |
EMD Millipore |
Cat# 71493 |
Critical commercial assays
|
PrimeSTAR HS DNA Polymerase |
Takara Bio |
Cat# R010B |
NEBuilder HiFi DNA Assembly Master Mix |
New England BioLabs |
Cat# E2621X |
NucleoBond Xtra Midi Plus |
Macherey-Nagel |
Cat# 740412.50 |
PureYield Plasmid Miniprep System |
Promega |
Cat# A1222 |
FastGene Plasmid Mini Kit |
Nippon Genetics |
Cat# FG-90502 |
MycoAlert Mycoplasma Detection Kit |
Lonza |
Cat# LT07–118 |
Green Up cADDis cAMP Assay Kit |
Montana Molecular |
Cat# U0200G |
BirA500 biotin-protein ligase standard reaction kit |
Avidity |
Cat #1 |
Deposited data
|
All experimental data |
This paper; Mendeley Data |
https://dx.doi.org/10.17632/ynrr4j7t4s.1
|
Active-state crystal structure of β-arrestin 1 bound to the phosphorylated V2R C-tail and Fab30 |
Shukla et al., 2013
|
PDB: 4JQI |
Inactive-state crystal structure of β-arrestin 1 |
Han et al., 2001
|
PDB: 1G4M |
neurotensin receptor and arrestin2 complex |
Huang et al., 2020
|
PDB: 6UP7 |
Experimental models: Cell lines
|
Human: HEK293A cells |
Thermo Fisher Scientific |
Cat# R70507
|
Human: ΔβArr1/2 DKO HEK293 cells |
O’Hayre et al., 2017
|
Clones 1 and 2 |
Insect: Spodoptera frugiperda Sf9 cells |
Expression Systems |
Cat# 94–001 |
Insect: Trichuplusia ni Hi5 cells |
Expression Systems |
Cat# 94–002 |
Recombinant DNA
|
pFastBac-NTSR1 |
Huang et al., 2020
|
N/A |
pVL-GRK5 |
Huang et al., 2020
|
N/A |
pFB Dual Fab30 |
This study |
N/A |
pET15b-β-arrestin-1 |
Huang et al., 2020
|
N/A |
pET15b-β-arrestin-1 (ΔCT) |
Huang et al., 2020
|
N/A |
pET15b-β-arrestin-1 (3Q) |
This study |
N/A |
pET15b-β-arrestin-1 (3Q) (ΔCT) |
This study |
N/A |
pET15b-β-arrestin-1 A12C V387C |
This study |
N/A |
pET15b-β-arrestin-1 A12C V387C (3Q) |
This study |
N/A |
pET15b-β-arrestin-1 L68C |
Latorraca et al., 2020
|
N/A |
pET15b-β-arrestin-1 L68C (3Q) |
This study |
N/A |
pET15b-β-arrestin-1 L167W L293C |
Latorraca et al., 2020
|
N/A |
pET15b-β-arrestin-1 L167W L293C (3Q) |
This study |
N/A |
Plasmids for NanoBiT experiments |
See Table S4 (Xu et al., 2022; Hisano et al., 2019; Huang et al., 2020; Shihoya et al., 2018; Baidya et al., 2020; Inoue et al., 2012; Kato et al., 2019; Kawakami et al., 2022) |
N/A |
β-arrestin-2-mApple |
Eichel et al., 2016
|
N/A |
β-arrestin-2(3Q)-mApple |
This study |
N/A |
mApple-N1 |
Shaner et al., 2008
|
Addgene #54567 |
Software and algorithms
|
GraphPad Prism, Version 8.0, 9.0 |
GraphPad, Inc. |
https://www.graphpad.com/
|
Soft Max Pro, Version 7 |
Molecular Devices |
https://www.moleculardevices.com/products/microplatereaders#softmaxproLink
|
FlowJo software, Version 10 |
FlowJo |
https://www.flowjo.com/solutions/flowjo
|
PyMOL |
Schrö dinger, Inc. |
https://pymol.org/2/
|
FluorEssence Version 3.8 |
Horiba, Inc. |
https://www.horiba.com
|
Fiji (ImageJ2) Version 2.3.0 |
N/A |
https://imagej.net/software/fiji/
|
R studio Version 1.3.1093 |
N/A |
https://www.rstudio.com/products/rstudio/
|
R Version 4.0.3 |
The R Foundation for Statistical Computing |
|
drc package (in R) Version 3.0–1 |
Ritz et al., 2015
|
N/A |
Biacore Control and Analysis Software Version 2.0.4 |
Cytiva |
N/A |
MagicPlot Version 3.0 |
MagicPlot Systems LLC |
https://magicplot.com/
|
Other
|
96 well white plates |
Greiner Bio-one |
Cat# 655083 |
384 well black |
Corning |
Cat# 3575 |
96 well ½ area white |
PerkinElmer |
Cat# 6005560 |
96-well V-bottom plate |
Greiner Bio-one |
Cat# 651201 |
96-well plate, black |
Corning |
Cat# 3340 |
Luminescence microplate reader |
Molecular Devices |
SpectraMax L, 2PMT |
Flow cytometer |
Sony |
EC800 |
Chemiluminescent imager |
Cytiva |
Amersham Imager 680 |
BioTek Multi plate reader |
BioTek |
BioTek Synergy H4 |
Tecan multimodal microplate reader |
Tecan |
Infinite M1000 PRO |
SPR |
Cytiva |
Biacore T100 |