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[Preprint]. 2023 Mar 16:2023.03.16.532618. [Version 1] doi: 10.1101/2023.03.16.532618

Cancer mutations rewire the RNA methylation specificity of METTL3-METTL14

Chi Zhang, Luiza Tunes, Meng-Hsiung Hsieh, Ping Wang, Ashwani Kumar, Brijesh B Khadgi, YenYu Yang, Katelyn A Doxtader, Emily Herrell, Oliwia Koczy, Rohit Setlem, Xunzhi Zhang, Bret Evers, Yinsheng Wang, Chao Xing, Hao Zhu, Yunsun Nam
PMCID: PMC10055151  PMID: 36993753

Abstract

Chemical modification of RNAs is important for post-transcriptional gene regulation. The METTL3-METTL14 complex generates most N 6 -methyladenosine (m 6 A) modifications in mRNAs, and dysregulated methyltransferase expression has been linked to numerous cancers. Here we show that changes in m 6 A modification location can impact oncogenesis. A gain-of-function missense mutation found in cancer patients, METTL14 R298P , promotes malignant cell growth in culture and in transgenic mice. The mutant methyltransferase preferentially modifies noncanonical sites containing a GGAU motif and transforms gene expression without increasing global m 6 A levels in mRNAs. The altered substrate specificity is intrinsic to METTL3-METTL14, helping us to propose a structural model for how the METTL3-METTL14 complex selects the cognate RNA sequences for modification. Together, our work highlights that sequence-specific m 6 A deposition is important for proper function of the modification and that noncanonical methylation events can impact aberrant gene expression and oncogenesis.

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